Path to genome folder specified as: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ Using 28 threads for the top and bottom strand indexing processes each, so using 56 cores in total Aligner to be used: >> Bowtie 2 << (default) Writing bisulfite genomes out into a single MFA (multi FastA) file Bismark Genome Preparation - Step I: Preparing folders Path to Bowtie 2 specified as: /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ Bisulfite Genome Indexer version v0.21.0 (last modified: 05 Feb 2019) Created Bisulfite Genome folder /gscratch/srlab/sr320/data/dumoar/sc-con-genome/Bisulfite_Genome/ Created Bisulfite Genome folder /gscratch/srlab/sr320/data/dumoar/sc-con-genome/Bisulfite_Genome/CT_conversion/ Created Bisulfite Genome folder /gscratch/srlab/sr320/data/dumoar/sc-con-genome/Bisulfite_Genome/GA_conversion/ Step I - Prepare genome folders - completed Bismark Genome Preparation - Step II: Bisulfite converting reference genome conversions performed: chromosome C->T G->A PGA_scaffold0__40_contigs__length_4818635 955093 916552 PGA_scaffold1__111_contigs__length_23635802 4696228 4744183 PGA_scaffold2__216_contigs__length_42616187 8365956 8286312 PGA_scaffold3__77_contigs__length_22140449 4547160 4532974 PGA_scaffold4__118_contigs__length_24133938 4876125 4834294 PGA_scaffold5__54_contigs__length_17529967 3561360 3569070 PGA_scaffold6__2_contigs__length_4500 713 533 PGA_scaffold7__77_contigs__length_16129408 3367042 3365927 PGA_scaffold8__70_contigs__length_6254265 1210172 1218300 PGA_scaffold9__2_contigs__length_6774 1604 1488 PGA_scaffold10__58_contigs__length_8083807 1631825 1633444 PGA_scaffold11__78_contigs__length_11409253 2279663 2289479 PGA_scaffold12__214_contigs__length_38711105 7685313 7616568 PGA_scaffold13__56_contigs__length_10281103 2034144 2012303 PGA_scaffold14__49_contigs__length_6382615 1263323 1287310 PGA_scaffold15__74_contigs__length_14466968 2959602 2977108 PGA_scaffold16__99_contigs__length_13714835 2773137 2783430 PGA_scaffold17__171_contigs__length_27881435 5614765 5674175 PGA_scaffold18__98_contigs__length_15388888 3093829 3139608 PGA_scaffold19__65_contigs__length_13296201 2683867 2742261 PGA_scaffold20__42_contigs__length_7444180 1494076 1477831 PGA_scaffold21__67_contigs__length_16858916 3452472 3439432 PGA_scaffold22__59_contigs__length_10008237 2040161 2034324 PGA_scaffold23__65_contigs__length_9586800 1922445 1920255 PGA_scaffold24__25_contigs__length_9615596 1991287 1957329 PGA_scaffold25__121_contigs__length_9021638 1782860 1770950 PGA_scaffold26__34_contigs__length_3174094 583842 597525 PGA_scaffold27__24_contigs__length_4511419 920618 928666 PGA_scaffold28__73_contigs__length_10794191 2151699 2161942 PGA_scaffold29__63_contigs__length_7458616 1492004 1506902 PGA_scaffold30__53_contigs__length_3533588 700347 717225 PGA_scaffold31__35_contigs__length_1951197 382263 381550 PGA_scaffold32__48_contigs__length_8091588 1624329 1648757 PGA_scaffold33__68_contigs__length_5591008 1131028 1119427 PGA_scaffold34__18_contigs__length_2048619 393847 397326 PGA_scaffold35__36_contigs__length_7416912 1491552 1487018 PGA_scaffold36__50_contigs__length_8312113 1661621 1678373 PGA_scaffold37__114_contigs__length_22981779 4648073 4686293 PGA_scaffold38__30_contigs__length_10707134 2162677 2181190 PGA_scaffold39__82_contigs__length_19157343 3903009 3885371 PGA_scaffold40__81_contigs__length_9975379 2009829 1990627 PGA_scaffold41__67_contigs__length_15779270 3237577 3234511 PGA_scaffold42__119_contigs__length_25812110 5272454 5240685 PGA_scaffold43__161_contigs__length_26349757 5376722 5354858 PGA_scaffold44__101_contigs__length_25971783 5250055 5315264 PGA_scaffold45__51_contigs__length_13476971 2701147 2700589 PGA_scaffold46__73_contigs__length_12693875 2571596 2578090 PGA_scaffold47__164_contigs__length_21858264 4440028 4428866 PGA_scaffold48__117_contigs__length_14149252 2909039 2914334 contig_1001_pilon__uns 4846 4676 contig_1002_pilon__uns 520 721 contig_1008_pilon__uns 8203 9696 contig_1013_pilon__uns 1355 986 contig_1014_pilon__uns 8990 8392 contig_1015_pilon__uns 8283 7684 contig_1019_pilon__uns 882 1246 contig_1020_pilon__uns 756 1022 contig_1023_pilon__uns 1120 920 contig_1027_pilon__uns 1249 1726 contig_102_pilon__uns 1209 1659 contig_1031_pilon__uns 2321 3153 contig_1036_pilon__uns 2206 1678 contig_103_pilon__uns 12610 11253 contig_1041_pilon__uns 788 1034 contig_1042_pilon__uns 3111 2395 contig_1043_pilon__uns 834 590 contig_1044_pilon__uns 401 103 contig_1045_pilon__uns 10286 10791 contig_1046_pilon__uns 516 203 contig_1049_pilon__uns 932 1285 contig_1052_pilon__uns 758 1301 contig_1058_pilon___frag_2___debris__uns 209 221 contig_1058_pilon___frag_4___debris__uns 54 99 contig_1059_pilon__uns 830 1170 contig_1060_pilon__uns 344 913 contig_1063_pilon__uns 57463 36531 contig_106_pilon__uns 6687 6859 contig_1070_pilon__uns 1033 894 contig_1071_pilon__uns 35519 32777 contig_1089_pilon__uns 13675 11686 contig_1091_pilon__uns 17630 20544 contig_1094_pilon__uns 12544 14906 contig_1098_pilon__uns 8196 8133 contig_1114_pilon__uns 930 401 contig_1117_pilon__uns 1802 1110 contig_1118_pilon__uns 11747 13120 contig_111_pilon__uns 1308 1419 contig_1120_pilon__uns 11509 10997 contig_1121_pilon___frag_1__uns 5069 5260 contig_1121_pilon___frag_2___debris__uns 1050 1257 contig_1121_pilon___frag_3__uns 30776 20918 contig_1125_pilon__uns 13473 14355 contig_1130_pilon__uns 703 992 contig_1131_pilon__uns 130 179 contig_1134_pilon___frag_1__uns 14447 10535 contig_1134_pilon___frag_2___debris__uns 517 733 contig_1134_pilon___frag_3__uns 17663 22098 contig_1139_pilon__uns 336 371 contig_1143_pilon__uns 1804 1314 contig_1144_pilon__uns 1491 1074 contig_1148_pilon__uns 2313 1330 contig_1152_pilon__uns 210 175 contig_1153_pilon__uns 771 331 contig_1155_pilon___frag_2___debris__uns 798 203 contig_1155_pilon___frag_3__uns 13213 9815 contig_1159_pilon__uns 2989 3255 contig_117_pilon__uns 12061 14540 contig_1180_pilon__uns 6096 6249 contig_1183_pilon__uns 1645 1179 contig_1184_pilon__uns 7520 7957 contig_1200_pilon__uns 5615 5022 contig_1203_pilon__uns 908 1266 contig_1206_pilon__uns 20828 20663 contig_1207_pilon__uns 17115 15026 contig_120_pilon__uns 6288 7071 contig_1213_pilon__uns 7514 9405 contig_1217_pilon__uns 1808 1459 contig_121_pilon__uns 3770 3199 contig_1223_pilon__uns 1999 1466 contig_1225_pilon__uns 17858 15635 contig_1226_pilon__uns 470 640 contig_1229_pilon__uns 3473 3985 contig_122_pilon__uns 13870 15683 contig_1232_pilon__uns 565 21 contig_1233_pilon___frag_1__uns 9337 8022 contig_1233_pilon___frag_2___debris__uns 262 202 contig_1233_pilon___frag_3__uns 5753 6331 contig_1235_pilon__uns 5111 4529 contig_1237_pilon__uns 1471 934 contig_1239_pilon__uns 3897 4257 contig_1243_pilon__uns 2461 2957 contig_1244_pilon__uns 9147 8012 contig_1251_pilon__uns 3665 2782 contig_1254_pilon__uns 18962 44559 contig_1258_pilon__uns 9108 8951 contig_1260_pilon__uns 191 260 contig_126_pilon__uns 550 397 contig_1271_pilon__uns 1736 8485 contig_1274_pilon__uns 3169 2226 contig_1276_pilon__uns 1482 1157 contig_127_pilon__uns 12263 11757 contig_1281_pilon__uns 2017 2021 contig_1283_pilon__uns 975 1128 contig_128_pilon__uns 12606 12569 contig_1291_pilon__uns 9505 9036 contig_1293_pilon__uns 1107 1509 contig_1301_pilon__uns 15863 3165 contig_1303_pilon__uns 26835 25739 contig_1304_pilon__uns 659 973 contig_1307_pilon__uns 2298 2917 contig_1308_pilon__uns 531 335 contig_1315_pilon__uns 9234 20336 contig_1318_pilon__uns 2764 2019 contig_1325_pilon__uns 783 10 contig_1329_pilon__uns 6763 7848 contig_1330_pilon__uns 188 197 contig_1338_pilon__uns 9661 9482 contig_1339_pilon__uns 1104 1051 contig_1340_pilon__uns 281 277 contig_1342_pilon__uns 10742 10358 contig_1352_pilon__uns 731 976 contig_1353_pilon__uns 526 390 contig_1367_pilon__uns 569 433 contig_1368_pilon__uns 521 167 contig_1372_pilon___frag_1__uns 8999 6772 contig_1372_pilon___frag_2___debris__uns 1003 765 contig_1372_pilon___frag_3__uns 23979 27128 contig_1374_pilon__uns 3443 2570 contig_1386_pilon__uns 13547 15197 contig_1387_pilon__uns 1244 1615 contig_1395_pilon__uns 11296 10976 contig_1398_pilon__uns 753 1056 contig_1399_pilon__uns 20390 19764 contig_1409_pilon__uns 1635 1204 contig_140_pilon__uns 451 616 contig_1410_pilon__uns 1480 1079 contig_1415_pilon__uns 7145 10228 contig_1419_pilon__uns 376 256 contig_1422_pilon__uns 11799 6211 contig_1424_pilon__uns 13762 13730 contig_1426_pilon__uns 1081 1436 contig_1427_pilon__uns 1082 1462 contig_142_pilon__uns 20915 21791 contig_1434_pilon__uns 18640 15115 contig_1438_pilon__uns 2263 1584 contig_1439_pilon__uns 28459 22076 contig_1442_pilon__uns 17397 19134 contig_1444_pilon__uns 10519 9831 contig_1445_pilon__uns 9774 20572 contig_1451_pilon__uns 555 770 contig_1452_pilon__uns 838 1166 contig_1454_pilon__uns 570 558 contig_145_pilon__uns 10554 8268 contig_1460_pilon__uns 11113 13984 contig_1461_pilon__uns 7820 7929 contig_146_pilon__uns 4805 5688 contig_1472_pilon__uns 6065 5743 contig_1473_pilon__uns 29 319 contig_1484_pilon__uns 8508 10693 contig_1488_pilon__uns 6307 3327 contig_1492_pilon__uns 16453 16746 contig_1493_pilon__uns 923 794 contig_1497_pilon__uns 26143 22670 contig_1498_pilon__uns 138 238 contig_1502_pilon__uns 25466 24837 contig_1511_pilon__uns 644 900 contig_1512_pilon__uns 797 1109 contig_1513_pilon__uns 10015 10842 contig_1517_pilon__uns 10416 13012 contig_1522_pilon__uns 1456 719 contig_1523_pilon__uns 102 171 contig_1525_pilon__uns 65352 66768 contig_1527_pilon__uns 19580 12003 contig_1528_pilon__uns 691 986 contig_1530_pilon__uns 1557 1917 contig_1533_pilon__uns 53478 53768 contig_1537_pilon__uns 1368 1022 contig_153_pilon__uns 587 410 contig_1540_pilon__uns 23642 18247 contig_1556_pilon__uns 37665 35395 contig_155_pilon__uns 216 514 contig_1560_pilon__uns 66278 69015 contig_1566_pilon__uns 18014 16593 contig_1571_pilon__uns 1865 918 contig_157_pilon__uns 8702 9733 contig_1599_pilon__uns 7330 7732 contig_1600_pilon__uns 18125 17392 contig_1609_pilon__uns 906 617 contig_1611_pilon__uns 216 5 contig_1616_pilon__uns 1822 1279 contig_1620_pilon__uns 1224 1425 contig_1622_pilon__uns 24898 23192 contig_1628_pilon__uns 1848 2299 contig_1631_pilon__uns 8095 7659 contig_1638_pilon__uns 1888 2273 contig_1643_pilon__uns 1884 1866 contig_1645_pilon__uns 951 1229 contig_1646_pilon__uns 15219 16014 contig_1650_pilon__uns 660 597 contig_1652_pilon__uns 1051 458 contig_1655_pilon__uns 30651 30178 contig_1663_pilon__uns 14659 15292 contig_1664_pilon__uns 872 652 contig_1668_pilon__uns 4429 4444 contig_166_pilon___frag_2___debris__uns 872 1030 contig_1670_pilon__uns 7247 8818 contig_1671_pilon__uns 23234 24131 contig_1672_pilon__uns 13480 11884 contig_1676_pilon__uns 9393 9403 contig_1678_pilon__uns 1198 1105 contig_1680_pilon__uns 1315 1777 contig_1681_pilon__uns 1163 1582 contig_1685_pilon__uns 779 557 contig_1689_pilon__uns 498 426 contig_1691_pilon__uns 521 446 contig_1697_pilon__uns 4093 3585 contig_1706_pilon__uns 13347 13974 contig_1710_pilon__uns 921 832 contig_1714_pilon__uns 4783 4650 contig_1716_pilon__uns 10556 10949 contig_1720_pilon__uns 116 132 contig_1729_pilon__uns 9934 11844 contig_172_pilon__uns 13797 15295 contig_1730_pilon__uns 6929 6404 contig_1733_pilon__uns 1571 880 contig_1734_pilon__uns 437 356 contig_1737_pilon__uns 9039 9286 contig_1739_pilon__uns 601 268 contig_1740_pilon__uns 363 24 contig_1742_pilon__uns 818 690 contig_1743_pilon__uns 856 1117 contig_1744_pilon__uns 100 155 contig_1745_pilon__uns 180 247 contig_174_pilon__uns 9033 10509 contig_1752_pilon__uns 1477 1053 contig_1753_pilon__uns 109 18 contig_1755_pilon__uns 586 572 contig_1760_pilon__uns 927 752 contig_1761_pilon__uns 195 305 contig_1768_pilon__uns 2246 1916 contig_176_pilon__uns 22450 20914 contig_1770_pilon__uns 523 392 contig_1771_pilon__uns 16649 19477 contig_1772_pilon__uns 88 518 contig_1773_pilon__uns 1055 771 contig_177_pilon__uns 11962 11115 contig_1780_pilon___frag_1__uns 7669 7251 contig_1780_pilon___frag_2___debris__uns 1316 954 contig_1780_pilon___frag_3__uns 10353 9235 contig_1781_pilon__uns 11924 10084 contig_1787_pilon__uns 231 207 contig_1789_pilon___frag_2___debris__uns 1293 1571 contig_1795_pilon___frag_1__uns 6784 6697 contig_1795_pilon___frag_2___debris__uns 257 254 contig_1797_pilon__uns 32914 34953 contig_1801_pilon___frag_2___debris__uns 457 342 contig_180_pilon__uns 6983 7257 contig_1810_pilon__uns 31824 28824 contig_1811_pilon__uns 1168 847 contig_1815_pilon__uns 8135 7454 contig_1816_pilon__uns 263 159 contig_1819_pilon__uns 30976 33296 contig_1829_pilon__uns 856 646 contig_1830_pilon__uns 15712 12283 contig_1834_pilon__uns 8068 9065 contig_1835_pilon__uns 6960 6708 contig_1839_pilon__uns 32378 26263 contig_1840_pilon__uns 209 161 contig_1846_pilon__uns 15247 16175 contig_1858_pilon__uns 1785 1510 contig_185_pilon__uns 52017 58069 contig_1864_pilon__uns 2299 2531 contig_1868_pilon__uns 10384 8834 contig_1869_pilon__uns 760 500 contig_1870_pilon__uns 1327 835 contig_1875_pilon__uns 137 109 contig_1877_pilon__uns 3454 4933 contig_1878_pilon__uns 245 224 contig_1881_pilon__uns 24482 25474 contig_1883_pilon__uns 8353 9644 contig_1888_pilon__uns 1372 1711 contig_1892_pilon__uns 42722 38458 contig_1896_pilon__uns 8694 9040 contig_189_pilon__uns 21045 21571 contig_1902_pilon__uns 10379 12590 contig_1904_pilon__uns 9636 11121 contig_1907_pilon__uns 19460 15101 contig_1908_pilon__uns 15153 15359 contig_190_pilon___frag_1__uns 29439 17590 contig_190_pilon___frag_2___debris__uns 952 1464 contig_1916_pilon__uns 1538 1294 contig_1921_pilon__uns 10140 12669 contig_1923_pilon___frag_1__uns 17337 17883 contig_1923_pilon___frag_2___debris__uns 354 409 contig_1923_pilon___frag_3__uns 14303 13956 contig_1924_pilon__uns 17484 15427 contig_1925_pilon__uns 1175 1243 contig_1926_pilon__uns 464 369 contig_1929_pilon___frag_2___debris__uns 768 552 contig_1931_pilon___frag_1__uns 11054 6287 contig_1931_pilon___frag_2___debris__uns 833 631 contig_1931_pilon___frag_3__uns 5300 6361 contig_1931_pilon___frag_4___debris__uns 352 777 contig_1931_pilon___frag_5__uns 13520 17426 contig_1939_pilon__uns 3015 3449 contig_1940_pilon__uns 3601 2677 contig_1943_pilon__uns 1484 1132 contig_1945_pilon__uns 1484 1625 contig_1962_pilon__uns 794 892 contig_1963_pilon__uns 19035 20368 contig_1965_pilon__uns 1615 571 contig_1969_pilon__uns 20001 19693 contig_1974_pilon__uns 2621 1989 contig_1989_pilon__uns 13945 1522 contig_1991_pilon__uns 745 792 contig_1993_pilon___frag_1__uns 26514 27155 contig_1993_pilon___frag_2___debris__uns 976 1148 contig_1993_pilon___frag_3__uns 14767 15235 contig_1998_pilon__uns 442 114 contig_199_pilon__uns 29674 30185 contig_1_pilon__uns 16101 14965 contig_2001_pilon__uns 989 1410 contig_2002_pilon__uns 3048 4293 contig_2010_pilon__uns 476 638 contig_2014_pilon__uns 3 328 contig_203_pilon__uns 13799 17981 contig_2042_pilon__uns 26748 18 contig_2049_pilon__uns 573 455 contig_204_pilon__uns 42995 42797 contig_2057_pilon__uns 67735 64234 contig_2060_pilon__uns 8705 5801 contig_2068_pilon__uns 206 176 contig_2069_pilon__uns 122 133 contig_206_pilon__uns 1929 1505 contig_2078_pilon__uns 105 31 contig_2087_pilon__uns 2983 3085 contig_2093_pilon__uns 178 39 contig_2098_pilon__uns 1121 896 contig_2100_pilon__uns 2622 3127 contig_210_pilon__uns 20175 23985 contig_2111_pilon__uns 117 101 contig_2112_pilon__uns 3982 3623 contig_211_pilon___frag_1__uns 11828 12074 contig_211_pilon___frag_2___debris__uns 107 0 contig_211_pilon___frag_3__uns 2479 1973 contig_2122_pilon__uns 429 381 contig_2126_pilon__uns 264 142 contig_2131_pilon__uns 194 74 contig_2139_pilon__uns 98 59 contig_2140_pilon__uns 5842 7176 contig_2141_pilon__uns 52 196 contig_2143_pilon__uns 7609 7552 contig_2149_pilon__uns 65 71 contig_2153_pilon__uns 3091 2164 contig_2164_pilon__uns 808 594 contig_2165_pilon__uns 201 145 contig_2167_pilon__uns 278 126 contig_2168_pilon__uns 154 53 contig_2176_pilon___frag_2___debris__uns 494 546 contig_217_pilon__uns 12412 12409 contig_2180_pilon__uns 7991 6005 contig_2182_pilon__uns 1329 1877 contig_2183_pilon__uns 21346 19117 contig_218_pilon__uns 7595 8268 contig_2192_pilon__uns 2765 2842 contig_2194_pilon__uns 2656 3123 contig_2198_pilon__uns 208 90 contig_219_pilon__uns 20911 18033 contig_2200_pilon__uns 146 170 contig_2201_pilon__uns 138 115 contig_2207_pilon__uns 74 82 contig_2209_pilon__uns 158 125 contig_220_pilon___frag_1__uns 21113 20559 contig_220_pilon___frag_2___debris__uns 828 1088 contig_220_pilon___frag_3__uns 10734 12156 contig_2213_pilon__uns 406 514 contig_2215_pilon__uns 212 122 contig_2216_pilon__uns 497 13 contig_2236_pilon__uns 160 87 contig_2238_pilon__uns 103 191 contig_223_pilon__uns 3120 4677 contig_2240_pilon__uns 107 68 contig_2242_pilon__uns 97 199 contig_2245_pilon__uns 140 144 contig_2247_pilon__uns 712 820 contig_2248_pilon__uns 2350 2623 contig_2249_pilon__uns 2682 6192 contig_2250_pilon__uns 439 361 contig_2251_pilon__uns 66 605 contig_2253_pilon__uns 569 303 contig_2254_pilon__uns 18078 18677 contig_2255_pilon__uns 20773 22957 contig_2259_pilon__uns 466 607 contig_225_pilon__uns 305 409 contig_2260_pilon__uns 439 440 contig_2262_pilon__uns 144 174 contig_2265_pilon__uns 20 1096 contig_2271_pilon__uns 278 274 contig_2274_pilon__uns 18323 19492 contig_2278_pilon__uns 136 186 contig_2280_pilon__uns 6545 7480 contig_2281_pilon__uns 401 388 contig_2284_pilon__uns 28 25 contig_2286_pilon__uns 50439 48594 contig_2288_pilon__uns 401 563 contig_2289_pilon__uns 721 623 contig_2290_pilon__uns 440 333 contig_2291_pilon__uns 487 435 contig_2292_pilon__uns 588 462 contig_2294_pilon__uns 473 379 contig_2295_pilon__uns 18952 15778 contig_2296_pilon__uns 255 275 contig_2297_pilon__uns 38 466 contig_2299_pilon__uns 6962 8953 contig_2302_pilon__uns 372 193 contig_2304_pilon__uns 84 166 contig_2306_pilon__uns 14 42 contig_2309_pilon__uns 39 58 contig_2311_pilon__uns 458 436 contig_2312_pilon__uns 248 500 contig_2313_pilon__uns 3321 3149 contig_2316_pilon__uns 795 580 contig_2317_pilon__uns 276 261 contig_2318_pilon__uns 113 108 contig_2320_pilon__uns 272 124 contig_2321_pilon__uns 455 365 contig_2322_pilon__uns 29299 20261 contig_2325_pilon__uns 170 185 contig_2326_pilon__uns 590 1941 contig_2333_pilon__uns 452 265 contig_2334_pilon__uns 291 281 contig_2336_pilon__uns 430 489 contig_2337_pilon__uns 488 518 contig_2339_pilon__uns 323 530 contig_233_pilon__uns 19044 16982 contig_2341_pilon__uns 335 387 contig_2344_pilon__uns 449 689 contig_2345_pilon___frag_1__uns 75581 72579 contig_2345_pilon___frag_2___debris__uns 4301 4535 contig_2345_pilon___frag_3__uns 55933 56085 contig_2347_pilon__uns 35941 22520 contig_234_pilon__uns 97 387 contig_2354_pilon__uns 117 143 contig_2355_pilon__uns 1757 263 contig_2357_pilon__uns 903 1182 contig_2358_pilon__uns 229 313 contig_235_pilon__uns 1834 2203 contig_2360_pilon__uns 147 165 contig_2362_pilon__uns 137 167 contig_2363_pilon__uns 328 354 contig_2364_pilon__uns 594 1036 contig_2365_pilon__uns 335 536 contig_2367_pilon__uns 143 144 contig_2368_pilon__uns 74 74 contig_2369_pilon__uns 1248 7 contig_236_pilon__uns 8374 7235 contig_2370_pilon__uns 24 46 contig_2376_pilon__uns 6919 7235 contig_2377_pilon__uns 278 317 contig_2378_pilon__uns 4210 3422 contig_2388_pilon__uns 263 376 contig_238_pilon__uns 16720 16687 contig_2390_pilon__uns 171 224 contig_2391_pilon__uns 220 202 contig_2392_pilon__uns 6092 4461 contig_2399_pilon__uns 317 335 contig_239_pilon__uns 3197 2783 contig_23_pilon___frag_2___debris__uns 1115 718 contig_2401_pilon__uns 133 134 contig_2402_pilon__uns 40 50 contig_2405_pilon__uns 10 183 contig_2409_pilon__uns 363 335 contig_2411_pilon__uns 105 257 contig_2416_pilon__uns 249 168 contig_2417_pilon__uns 113 190 contig_2418_pilon__uns 108 114 contig_2421_pilon__uns 148 123 contig_2423_pilon__uns 105 78 contig_2427_pilon__uns 364 544 contig_2430_pilon__uns 14551 15730 contig_2433_pilon__uns 315 546 contig_2434_pilon__uns 37 515 contig_2435_pilon__uns 1641 2217 contig_2439_pilon__uns 2426 2536 contig_2440_pilon__uns 1396 1471 contig_2443_pilon__uns 16164 16120 contig_2444_pilon__uns 350 221 contig_2446_pilon__uns 306 293 contig_2449_pilon__uns 305 350 contig_244_pilon__uns 11545 11334 contig_2455_pilon__uns 230 160 contig_2456_pilon__uns 7861 7751 contig_2457_pilon__uns 294 216 contig_2459_pilon__uns 67 139 contig_2462_pilon__uns 595 944 contig_2463_pilon__uns 168 171 contig_2466_pilon__uns 554 526 contig_2469_pilon__uns 352 541 contig_2471_pilon__uns 846 731 contig_2473_pilon__uns 1400 1849 contig_2475_pilon__uns 6146 5989 contig_2476_pilon__uns 88 91 contig_2477_pilon__uns 366 419 contig_247_pilon___frag_2___debris__uns 895 867 contig_2480_pilon__uns 115 101 contig_2484_pilon__uns 439 391 contig_2486_pilon__uns 176 139 contig_2487_pilon__uns 375 171 contig_248_pilon__uns 33683 32384 contig_2490_pilon__uns 107 57 contig_2491_pilon__uns 306 81 contig_2492_pilon___frag_1__uns 3756 1753 contig_2492_pilon___frag_2___debris__uns 353 441 contig_2492_pilon___frag_3__uns 30892 29701 contig_2494_pilon__uns 88 176 contig_2497_pilon__uns 65 143 contig_2499_pilon__uns 229 249 contig_2500_pilon__uns 159 101 contig_2503_pilon__uns 35310 34858 contig_2507_pilon__uns 819 5962 contig_2509_pilon__uns 9963 12532 contig_2510_pilon__uns 4992 5062 contig_2512_pilon__uns 20122 14902 contig_2513_pilon__uns 219 182 contig_2515_pilon__uns 7330 7628 contig_2517_pilon__uns 322 356 contig_2518_pilon__uns 271 160 contig_2519_pilon__uns 21991 23626 contig_251_pilon__uns 2279 1764 contig_2520_pilon__uns 277 169 contig_2525_pilon__uns 1262 740 contig_2527_pilon__uns 15401 17240 contig_252_pilon__uns 25424 13286 contig_2533_pilon__uns 3673 6214 contig_2535_pilon__uns 511 358 contig_2536_pilon__uns 278 231 contig_2539_pilon__uns 87 31 contig_2540_pilon__uns 188 154 contig_2544_pilon__uns 3329 3192 contig_2549_pilon__uns 373 487 contig_2550_pilon__uns 500 892 contig_2551_pilon__uns 415 63 contig_2552_pilon__uns 10858 9885 contig_2555_pilon__uns 338 26 contig_2560_pilon__uns 6216 455 contig_2563_pilon__uns 1883 2250 contig_2564_pilon__uns 524 479 contig_2565_pilon__uns 144 95 contig_2566_pilon__uns 38 40 contig_2569_pilon__uns 231 325 contig_256_pilon__uns 7578 8352 contig_2570_pilon__uns 1713 2022 contig_2572_pilon__uns 638 692 contig_2574_pilon__uns 130 69 contig_2587_pilon__uns 1350 1610 contig_2588_pilon__uns 243 122 contig_2594_pilon__uns 2415 2080 contig_2595_pilon__uns 146 188 contig_2596_pilon__uns 137 139 contig_2598_pilon__uns 920 79 contig_2600_pilon__uns 3844 7545 contig_2607_pilon__uns 8878 7015 contig_2608_pilon__uns 530 766 contig_2609_pilon__uns 5524 5872 contig_260_pilon__uns 507 472 contig_2610_pilon__uns 3345 4888 contig_2612_pilon__uns 12914 17154 contig_2613_pilon__uns 1729 478 contig_2614_pilon__uns 119 132 contig_2617_pilon__uns 183 158 contig_2618_pilon__uns 189 228 contig_2619_pilon__uns 913 771 contig_2620_pilon__uns 203 277 contig_2627_pilon__uns 17488 17714 contig_2628_pilon__uns 48 180 contig_2629_pilon___frag_1__uns 13331 14044 contig_2629_pilon___frag_2___debris__uns 938 698 contig_2629_pilon___frag_3__uns 10055 10220 contig_262_pilon__uns 16 101 contig_2630_pilon__uns 61 70 contig_2637_pilon__uns 89 301 contig_2639_pilon__uns 3140 3910 contig_2641_pilon__uns 92 108 contig_2642_pilon__uns 52113 49196 contig_2643_pilon__uns 16474 14850 contig_2646_pilon__uns 107 112 contig_2650_pilon__uns 193 229 contig_2651_pilon__uns 271 83 contig_2653_pilon__uns 225 23 contig_2654_pilon__uns 128 90 contig_2656_pilon__uns 311 321 contig_2657_pilon__uns 31 34 contig_2663_pilon__uns 268 271 contig_2664_pilon__uns 926 951 contig_2666_pilon__uns 259 315 contig_2667_pilon__uns 201 23 contig_2669_pilon__uns 21465 21024 contig_266_pilon__uns 6401 5075 contig_2670_pilon__uns 8170 9119 contig_2671_pilon__uns 178 175 contig_2672_pilon__uns 322 673 contig_2676_pilon__uns 293 251 contig_2677_pilon__uns 746 455 contig_2678_pilon__uns 119 102 contig_2679_pilon__uns 140 926 contig_2683_pilon__uns 119 130 contig_2687_pilon__uns 561 846 contig_268_pilon__uns 32185 33325 contig_2694_pilon__uns 775 667 contig_2695_pilon__uns 125 106 contig_2699_pilon__uns 44551 46943 contig_269_pilon__uns 15128 11995 contig_2702_pilon__uns 541 415 contig_2706_pilon__uns 401 280 contig_2708_pilon__uns 62 98 contig_2710_pilon__uns 4509 6080 contig_2714_pilon__uns 193 111 contig_2717_pilon__uns 416 344 contig_2718_pilon__uns 9547 9405 contig_2719_pilon__uns 173 87 contig_2722_pilon__uns 861 928 contig_2724_pilon__uns 493 287 contig_2725_pilon__uns 4537 5805 contig_2727_pilon__uns 400 355 contig_2730_pilon__uns 11707 13007 contig_2732_pilon__uns 165 104 contig_2735_pilon__uns 4063 3335 contig_2736_pilon__uns 250 156 contig_2738_pilon__uns 155 329 contig_2740_pilon__uns 68 108 contig_2745_pilon__uns 966 5 contig_2747_pilon__uns 226 273 contig_2750_pilon__uns 72 80 contig_2751_pilon__uns 87 131 contig_2753_pilon__uns 418 768 contig_2758_pilon__uns 118 311 contig_2760_pilon__uns 216 231 contig_2763_pilon__uns 23641 24653 contig_2765_pilon__uns 239 452 contig_2766_pilon__uns 261 212 contig_2767_pilon__uns 2000 1873 contig_2771_pilon__uns 202 246 contig_2773_pilon__uns 301 234 contig_2775_pilon__uns 153 68 contig_2777_pilon__uns 341 201 contig_2778_pilon__uns 268 352 contig_2779_pilon__uns 310 157 contig_2782_pilon__uns 409 410 contig_2787_pilon__uns 14073 13263 contig_2788_pilon__uns 117 129 contig_2791_pilon__uns 2384 3386 contig_2792_pilon__uns 270 324 contig_2811_pilon__uns 287 335 contig_2815_pilon__uns 332 450 contig_2816_pilon__uns 4764 4361 contig_2817_pilon__uns 112 105 contig_2819_pilon__uns 638 490 contig_2820_pilon__uns 254 173 contig_2822_pilon__uns 364 211 contig_2823_pilon__uns 187 234 contig_2824_pilon__uns 102 96 contig_2828_pilon__uns 470 559 contig_2829_pilon__uns 863 792 contig_282_pilon__uns 24372 21888 contig_2830_pilon__uns 935 1013 contig_2832_pilon__uns 342 335 contig_2834_pilon__uns 341 337 contig_2835_pilon__uns 521 549 contig_2836_pilon__uns 345 289 contig_2838_pilon__uns 981 457 contig_2840_pilon__uns 171 154 contig_2841_pilon__uns 242 123 contig_2846_pilon__uns 1137 4889 contig_2851_pilon__uns 109 27 contig_2856_pilon__uns 213 281 contig_2857_pilon__uns 184 358 contig_2858_pilon__uns 49 97 contig_2859_pilon__uns 154 103 contig_2861_pilon__uns 251 238 contig_2865_pilon__uns 748 409 contig_2867_pilon__uns 943 967 contig_2872_pilon__uns 604 708 contig_2874_pilon___frag_1__uns 21815 17631 contig_2874_pilon___frag_2___debris__uns 613 758 contig_2874_pilon___frag_3__uns 6286 6775 contig_2875_pilon__uns 2415 1661 contig_2878_pilon__uns 99 188 contig_2879_pilon__uns 707 736 contig_2881_pilon__uns 6952 6867 contig_2882_pilon__uns 2106 1612 contig_2883_pilon__uns 197 66 contig_2884_pilon__uns 165 109 contig_2885_pilon__uns 311 254 contig_2886_pilon__uns 68 215 contig_2889_pilon__uns 1084 1119 contig_288_pilon__uns 6240 5815 contig_2894_pilon__uns 1163 1371 contig_2895_pilon__uns 63 97 contig_2896_pilon__uns 229 196 contig_289_pilon___frag_2___debris__uns 152 228 contig_289_pilon___frag_3__uns 8753 9512 contig_289_pilon___frag_4___debris__uns 455 494 contig_289_pilon___frag_5__uns 5242 5786 contig_289_pilon___frag_6___debris__uns 648 183 contig_289_pilon___frag_7__uns 24202 21287 contig_2900_pilon__uns 170 141 contig_2901_pilon__uns 112 82 contig_2905_pilon__uns 374 447 contig_2906_pilon__uns 14 272 contig_2909_pilon__uns 296 306 contig_2911_pilon__uns 355 185 contig_2920_pilon__uns 626 417 contig_2921_pilon__uns 142 63 contig_2922_pilon__uns 197 237 contig_2923_pilon__uns 220 228 contig_2924_pilon__uns 258 489 contig_2926_pilon__uns 152 152 contig_2927_pilon__uns 2535 2220 contig_2928_pilon__uns 144 51 contig_2929_pilon__uns 12434 14551 contig_2932_pilon__uns 1432 1536 contig_2934_pilon__uns 143 93 contig_2935_pilon__uns 109 114 contig_2936_pilon__uns 131 102 contig_2940_pilon__uns 528 545 contig_2941_pilon__uns 149 96 contig_2942_pilon__uns 1356 1160 contig_2943_pilon__uns 158 74 contig_2946_pilon__uns 315 473 contig_2948_pilon__uns 485 607 contig_2949_pilon__uns 9936 9985 contig_294_pilon__uns 751 547 contig_2950_pilon__uns 37433 39433 contig_2951_pilon__uns 129 141 contig_2952_pilon__uns 17069 15428 contig_2953_pilon__uns 351 299 contig_2954_pilon__uns 196 191 contig_2955_pilon__uns 132 103 contig_2960_pilon__uns 350 257 contig_2962_pilon__uns 1136 1363 contig_2965_pilon__uns 32508 30345 contig_2966_pilon__uns 102 128 contig_2967_pilon__uns 1377 1818 contig_2968_pilon__uns 1018 384 contig_2969_pilon__uns 195 233 contig_2970_pilon__uns 61 42 contig_2973_pilon__uns 62 67 contig_2976_pilon__uns 645 650 contig_2978_pilon__uns 93 129 contig_2980_pilon__uns 53 106 contig_2981_pilon__uns 44713 44939 contig_2983_pilon__uns 102 82 contig_2984_pilon__uns 212 117 contig_2987_pilon__uns 18 445 contig_2994_pilon__uns 8597 8254 contig_2997_pilon__uns 236 103 contig_2999_pilon__uns 650 427 contig_3000_pilon__uns 154 160 contig_3001_pilon__uns 23334 19268 contig_3002_pilon__uns 136 123 contig_3003_pilon__uns 122 120 contig_3004_pilon__uns 50 10 contig_3009_pilon__uns 5336 5063 contig_3010_pilon__uns 80 106 contig_3013_pilon__uns 49 43 contig_3015_pilon__uns 244 208 contig_3017_pilon__uns 0 2380 contig_3019_pilon__uns 4226 4994 contig_3020_pilon__uns 3 243 contig_3022_pilon__uns 190 246 contig_3024_pilon__uns 139 65 contig_3025_pilon__uns 414 326 contig_3026_pilon__uns 90 152 contig_3027_pilon__uns 275 342 contig_3028_pilon__uns 50 293 contig_3032_pilon___frag_1__uns 17297 15550 contig_3032_pilon___frag_2___debris__uns 861 771 contig_3036_pilon__uns 259 299 contig_303_pilon__uns 17661 20186 contig_3040_pilon__uns 2678 3358 contig_3041_pilon__uns 139 124 contig_3043_pilon__uns 309 308 contig_3044_pilon__uns 1746 1148 contig_3047_pilon__uns 180 142 contig_3055_pilon__uns 164 151 contig_3058_pilon__uns 101 136 contig_3061_pilon__uns 136 190 contig_3064_pilon__uns 559 703 contig_3068_pilon__uns 287 448 contig_3070_pilon__uns 654 489 contig_3072_pilon__uns 429 340 contig_3073_pilon__uns 201 204 contig_3074_pilon__uns 104 193 contig_3079_pilon__uns 169 145 contig_3086_pilon__uns 1822 2413 contig_3087_pilon__uns 169 202 contig_3088_pilon__uns 21211 15970 contig_3090_pilon__uns 6911 6723 contig_3093_pilon__uns 370 686 contig_3102_pilon__uns 600 438 contig_3103_pilon__uns 115 224 contig_3104_pilon__uns 126 106 contig_3106_pilon__uns 105 144 contig_310_pilon__uns 655 739 contig_3112_pilon__uns 323 282 contig_3113_pilon__uns 245 104 contig_3120_pilon__uns 48773 46722 contig_3126_pilon__uns 1125 550 contig_3127_pilon__uns 2446 2759 contig_312_pilon__uns 1062 517 contig_3130_pilon__uns 95 181 contig_3132_pilon__uns 3053 2280 contig_3133_pilon__uns 689 621 contig_3138_pilon__uns 1134 814 contig_3141_pilon__uns 224 171 contig_3142_pilon__uns 316 273 contig_3144_pilon__uns 167 175 contig_3146_pilon__uns 187 43 contig_3147_pilon__uns 861 545 contig_3150_pilon__uns 5439 3880 contig_3151_pilon__uns 165 206 contig_3153_pilon__uns 198 102 contig_3155_pilon__uns 191 90 contig_3156_pilon__uns 3488 4191 contig_315_pilon__uns 24674 26667 contig_3160_pilon__uns 829 1263 contig_3161_pilon__uns 231 148 contig_3163_pilon__uns 145 170 contig_3166_pilon__uns 363 311 contig_3169_pilon__uns 1069 1299 contig_3172_pilon__uns 148 69 contig_3173_pilon__uns 125 208 contig_3177_pilon__uns 194 124 contig_3180_pilon__uns 56 41 contig_3181_pilon__uns 683 746 contig_3185_pilon__uns 611 722 contig_3186_pilon__uns 5855 4944 contig_3190_pilon__uns 104 131 contig_3192_pilon__uns 274 147 contig_3194_pilon__uns 451 373 contig_3197_pilon__uns 4670 4667 contig_3199_pilon__uns 184 53 contig_31_pilon__uns 12238 10241 contig_3200_pilon__uns 496 556 contig_3201_pilon__uns 149 104 contig_3203_pilon__uns 8915 4295 contig_3204_pilon__uns 181 198 contig_3209_pilon__uns 284 330 contig_320_pilon__uns 596 429 contig_3211_pilon__uns 2295 2565 contig_3212_pilon__uns 2312 184 contig_3213_pilon__uns 158 123 contig_3220_pilon__uns 476 355 contig_3223_pilon__uns 202 141 contig_3224_pilon__uns 31773 32719 contig_3225_pilon__uns 637 670 contig_3228_pilon__uns 2951 3084 contig_3230_pilon__uns 573 209 contig_3231_pilon__uns 311 354 contig_3232_pilon__uns 171 345 contig_3233_pilon__uns 325 206 contig_3235_pilon__uns 285 566 contig_3236_pilon__uns 48 181 contig_3237_pilon__uns 19153 23442 contig_3243_pilon__uns 406 523 contig_3244_pilon__uns 275 178 contig_3249_pilon__uns 168 97 contig_3251_pilon__uns 229 265 contig_3252_pilon__uns 3706 6197 contig_3254_pilon__uns 166 113 contig_3257_pilon__uns 1116 1448 contig_3258_pilon__uns 332 314 contig_3259_pilon__uns 200 342 contig_3260_pilon__uns 132 120 contig_3261_pilon__uns 119 97 contig_3262_pilon__uns 126 106 contig_3266_pilon__uns 1074 880 contig_3269_pilon__uns 489 212 contig_327_pilon__uns 57222 57977 contig_3284_pilon__uns 207 241 contig_3285_pilon__uns 116 225 contig_3295_pilon__uns 182 150 contig_3298_pilon__uns 204 390 contig_32_pilon___frag_1__uns 4337 4491 contig_32_pilon___frag_2___debris__uns 601 705 contig_3301_pilon__uns 8980 1764 contig_3302_pilon__uns 397 617 contig_3305_pilon__uns 171 171 contig_3306_pilon__uns 535 333 contig_3307_pilon__uns 110 137 contig_3311_pilon__uns 411 413 contig_3317_pilon__uns 218 86 contig_3318_pilon__uns 530 580 contig_3319_pilon__uns 162 118 contig_331_pilon__uns 329 423 contig_3320_pilon__uns 25534 21981 contig_3321_pilon__uns 50010 47600 contig_3323_pilon__uns 217 240 contig_3326_pilon__uns 306 314 contig_3327_pilon__uns 433 436 contig_3331_pilon__uns 994 515 contig_3339_pilon__uns 490 499 contig_3342_pilon__uns 435 458 contig_3343_pilon__uns 2810 6038 contig_3344_pilon__uns 103 188 contig_3346_pilon__uns 278 347 contig_3347_pilon__uns 335 558 contig_3348_pilon__uns 82 461 contig_334_pilon__uns 1707 2427 contig_3351_pilon__uns 4008 4189 contig_3352_pilon__uns 142 130 contig_3353_pilon__uns 263 227 contig_3354_pilon__uns 628 759 contig_3355_pilon__uns 987 875 contig_3358_pilon__uns 189 232 contig_3360_pilon__uns 139 124 contig_3361_pilon__uns 121 650 contig_3363_pilon__uns 22 212 contig_3367_pilon__uns 239 228 contig_3368_pilon__uns 12969 12389 contig_3369_pilon__uns 220 194 contig_336_pilon__uns 5496 4414 contig_3372_pilon__uns 192 260 contig_3373_pilon__uns 162 180 contig_3384_pilon__uns 166 138 contig_3389_pilon__uns 1413 964 contig_338_pilon__uns 23175 23880 contig_3392_pilon__uns 209 80 contig_3396_pilon__uns 162 208 contig_3399_pilon__uns 113 136 contig_3400_pilon__uns 156 158 contig_3402_pilon__uns 366 381 contig_3405_pilon__uns 12530 4595 contig_3406_pilon__uns 332 1026 contig_3407_pilon__uns 84 118 contig_3408_pilon__uns 153 158 contig_3410_pilon__uns 871 674 contig_3412_pilon__uns 231 389 contig_3415_pilon__uns 163 157 contig_3416_pilon__uns 1174 1045 contig_3418_pilon__uns 266 187 contig_3419_pilon__uns 380 1047 contig_3421_pilon__uns 167 146 contig_3422_pilon__uns 138 108 contig_3424_pilon__uns 1281 1569 contig_3427_pilon__uns 139 101 contig_3430_pilon__uns 102 93 contig_3431_pilon__uns 3044 2698 contig_3432_pilon__uns 370 326 contig_3433_pilon__uns 9429 6276 contig_3435_pilon__uns 2085 2020 contig_3436_pilon__uns 180 82 contig_3437_pilon__uns 204 244 contig_3441_pilon__uns 95 262 contig_3442_pilon__uns 102 221 contig_3445_pilon__uns 892 512 contig_3448_pilon__uns 5100 5421 contig_3450_pilon__uns 239 104 contig_3455_pilon__uns 661 764 contig_3456_pilon__uns 2855 4060 contig_3466_pilon__uns 125 140 contig_3467_pilon__uns 330 633 contig_3470_pilon__uns 197 202 contig_3474_pilon__uns 135 148 contig_3475_pilon__uns 203 221 contig_3482_pilon__uns 204 232 contig_3484_pilon__uns 141 103 contig_3486_pilon__uns 414 551 contig_3487_pilon__uns 119 117 contig_3488_pilon__uns 1127 661 contig_3489_pilon__uns 87 126 contig_3494_pilon__uns 473 676 contig_3495_pilon__uns 2106 2146 contig_3496_pilon__uns 898 1053 contig_3497_pilon__uns 2128 1729 contig_3501_pilon__uns 33 15 contig_3504_pilon__uns 51 50 contig_3507_pilon__uns 1213 756 contig_3510_pilon__uns 87 111 contig_3514_pilon__uns 162 241 contig_3521_pilon__uns 4767 6316 contig_3524_pilon__uns 61 55 contig_3527_pilon__uns 156 106 contig_3528_pilon__uns 385 448 contig_352_pilon__uns 1894 2255 contig_3531_pilon__uns 520 1929 contig_3533_pilon__uns 408 539 contig_3538_pilon__uns 115 203 contig_353_pilon__uns 23162 25468 contig_3540_pilon__uns 170 205 contig_3541_pilon__uns 324 349 contig_3544_pilon__uns 238 174 contig_3546_pilon__uns 205 224 contig_3547_pilon__uns 204 164 contig_3549_pilon__uns 121 157 contig_3552_pilon__uns 2047 2346 contig_3553_pilon__uns 548 1200 contig_3558_pilon__uns 7676 8060 contig_355_pilon__uns 8888 7975 contig_3560_pilon__uns 100 243 contig_3562_pilon__uns 165 127 contig_3564_pilon__uns 360 666 contig_3565_pilon__uns 193 111 contig_356_pilon__uns 20560 16109 contig_3572_pilon__uns 8999 8204 contig_3574_pilon__uns 114 166 contig_3575_pilon__uns 143 96 contig_3576_pilon__uns 41 83 contig_3578_pilon___frag_2___debris__uns 342 338 contig_3579_pilon__uns 541 197 contig_3580_pilon__uns 327 219 contig_3582_pilon__uns 104 114 contig_3584_pilon__uns 294 281 contig_3585_pilon__uns 1215 789 contig_3590_pilon__uns 1098 800 contig_3591_pilon__uns 104 85 contig_3592_pilon__uns 101 197 contig_3596_pilon__uns 51 181 contig_3598_pilon__uns 1182 1113 contig_3600_pilon__uns 6813 11160 contig_3605_pilon__uns 46 53 contig_3606_pilon__uns 203 246 contig_3607_pilon__uns 98 141 contig_3608_pilon__uns 306 172 contig_360_pilon__uns 696 887 contig_3610_pilon__uns 337 602 contig_3611_pilon__uns 1252 531 contig_3612_pilon__uns 136 101 contig_361_pilon__uns 1830 2353 contig_3620_pilon__uns 195 114 contig_3624_pilon__uns 459 200 contig_3625_pilon__uns 3887 2800 contig_3628_pilon__uns 5052 5810 contig_3629_pilon__uns 119 127 contig_3630_pilon__uns 1257 1020 contig_3631_pilon__uns 270 256 contig_3632_pilon__uns 829 1580 contig_3636_pilon__uns 205 200 contig_3637_pilon__uns 340 274 contig_3638_pilon__uns 119 76 contig_3639_pilon__uns 169 336 contig_363_pilon__uns 11091 11193 contig_3640_pilon__uns 8825 8281 contig_3641_pilon__uns 244 272 contig_3643_pilon__uns 4381 2319 contig_3644_pilon__uns 8002 7443 contig_3648_pilon__uns 201 195 contig_364_pilon__uns 4454 4232 contig_3657_pilon__uns 593 553 contig_3659_pilon__uns 8104 7392 contig_3660_pilon__uns 1104 1069 contig_3661_pilon__uns 1294 621 contig_3665_pilon__uns 153 155 contig_3667_pilon__uns 157 165 contig_3669_pilon__uns 17 378 contig_3670_pilon__uns 81 187 contig_3671_pilon__uns 563 510 contig_3672_pilon__uns 2180 2515 contig_3674_pilon__uns 211 219 contig_3677_pilon__uns 899 57 contig_3678_pilon__uns 381 321 contig_3679_pilon__uns 907 3496 contig_367_pilon__uns 24388 25187 contig_3680_pilon__uns 77 105 contig_3682_pilon__uns 25 22 contig_3683_pilon__uns 226 284 contig_3684_pilon__uns 280 277 contig_3687_pilon__uns 239 156 contig_3689_pilon__uns 2475 1577 contig_3691_pilon__uns 87 79 contig_3694_pilon__uns 224 152 contig_3696_pilon__uns 217 339 contig_3704_pilon__uns 63 62 contig_3705_pilon__uns 149 80 contig_3707_pilon__uns 0 53 contig_370_pilon__uns 1771 2565 contig_3711_pilon__uns 148 411 contig_3714_pilon__uns 1171 1243 contig_3715_pilon__uns 455 383 contig_3716_pilon__uns 97 114 contig_3719_pilon__uns 275 348 contig_3720_pilon__uns 351 410 contig_3723_pilon__uns 4466 4792 contig_3724_pilon__uns 16770 15055 contig_3725_pilon__uns 6 248 contig_3726_pilon__uns 614 526 contig_3727_pilon__uns 130 251 contig_3728_pilon__uns 6010 4905 contig_372_pilon__uns 31949 30455 contig_3731_pilon__uns 40 249 contig_3732_pilon__uns 12320 10013 contig_3733_pilon__uns 376 606 contig_3734_pilon__uns 588 444 contig_3735_pilon__uns 635 343 contig_3736_pilon__uns 1459 566 contig_3737_pilon__uns 161 189 contig_3739_pilon__uns 39 3 contig_3740_pilon__uns 964 1166 contig_3741_pilon__uns 574 572 contig_3742_pilon__uns 577 296 contig_3743_pilon__uns 1275 761 contig_3746_pilon__uns 426 228 contig_3749_pilon__uns 149 237 contig_3750_pilon__uns 89 145 contig_3753_pilon__uns 172 380 contig_3754_pilon__uns 272 260 contig_3755_pilon__uns 300 342 contig_3756_pilon__uns 1422 1355 contig_3758_pilon__uns 4785 4567 contig_3761_pilon__uns 92 138 contig_3763_pilon__uns 616 351 contig_3764_pilon__uns 2971 3103 contig_3765_pilon__uns 8893 8840 contig_3766_pilon__uns 238 236 contig_3770_pilon__uns 615 662 contig_3772_pilon__uns 5036 4798 contig_3773_pilon__uns 374 345 contig_3774_pilon__uns 142 62 contig_3775_pilon__uns 239 212 contig_3776_pilon__uns 67 31 contig_3777_pilon__uns 102 208 contig_3778_pilon__uns 201 142 contig_3779_pilon__uns 15545 15658 contig_377_pilon__uns 5741 4937 contig_3780_pilon__uns 3235 3437 contig_3781_pilon__uns 47680 40020 contig_3782_pilon__uns 87 135 contig_3783_pilon__uns 16 29 contig_3784_pilon__uns 5211 4831 contig_3785_pilon__uns 161 313 contig_3789_pilon__uns 1212 1057 contig_3790_pilon__uns 18 0 contig_3791_pilon__uns 416 371 contig_3793_pilon__uns 11264 10158 contig_3794_pilon__uns 230 267 contig_3797_pilon__uns 409 431 contig_3801_pilon__uns 476 551 contig_3804_pilon__uns 69 387 contig_3805_pilon__uns 535 490 contig_3806_pilon__uns 513 500 contig_3809_pilon__uns 210 114 contig_3811_pilon__uns 181 277 contig_3812_pilon__uns 14109 5333 contig_3814_pilon__uns 6199 6205 contig_3815_pilon__uns 1991 1526 contig_3818_pilon__uns 761 796 contig_3819_pilon__uns 570 704 contig_3824_pilon__uns 4258 4018 contig_3825_pilon__uns 133 145 contig_3826_pilon__uns 399 209 contig_3828_pilon__uns 254 906 contig_3829_pilon__uns 582 451 contig_382_pilon__uns 18666 18330 contig_3830_pilon__uns 1002 934 contig_3832_pilon__uns 20579 19677 contig_3834_pilon__uns 4931 6016 contig_3835_pilon__uns 485 589 contig_3837_pilon__uns 1811 1477 contig_3838_pilon__uns 330 401 contig_3841_pilon__uns 479 281 contig_3843_pilon__uns 518 31 contig_3844_pilon__uns 76 59 contig_3845_pilon__uns 154 127 contig_3847_pilon__uns 360 311 contig_3849_pilon__uns 164 109 contig_3853_pilon__uns 300 315 contig_3855_pilon__uns 183 170 contig_3856_pilon__uns 671 384 contig_3858_pilon__uns 115 188 contig_3859_pilon__uns 510 43 contig_385_pilon___frag_2___debris__uns 945 824 contig_3860_pilon__uns 308 353 contig_3862_pilon__uns 323 183 contig_3863_pilon__uns 230 202 contig_3864_pilon__uns 348 251 contig_3866_pilon__uns 323 392 contig_3867_pilon__uns 231 227 contig_3869_pilon__uns 211 164 contig_3871_pilon__uns 156 164 contig_3873_pilon__uns 131 165 contig_3876_pilon__uns 20 22 contig_3878_pilon__uns 425 1267 contig_3881_pilon__uns 303 382 contig_3883_pilon__uns 2797 2344 contig_3884_pilon__uns 347 278 contig_3889_pilon__uns 5587 4861 contig_388_pilon___frag_1__uns 49010 45967 contig_388_pilon___frag_2___debris__uns 2439 58 contig_388_pilon___frag_3__uns 17313 13002 contig_388_pilon___frag_4___debris__uns 675 1379 contig_388_pilon___frag_5__uns 24726 28551 contig_3892_pilon__uns 4768 1701 contig_3896_pilon__uns 149 107 contig_389_pilon__uns 34305 31368 contig_3905_pilon__uns 1123 1536 contig_390_pilon__uns 3512 3988 contig_3911_pilon__uns 88 112 contig_3912_pilon__uns 1740 1278 contig_3929_pilon__uns 569 330 contig_392_pilon__uns 2232 1578 contig_3938_pilon__uns 223 124 contig_3939_pilon__uns 171 121 contig_3941_pilon__uns 141 74 contig_3947_pilon__uns 110 101 contig_3952_pilon__uns 477 562 contig_3954_pilon__uns 1 227 contig_3958_pilon__uns 128 129 contig_3959_pilon__uns 108 181 contig_395_pilon__uns 29981 28539 contig_3960_pilon__uns 354 355 contig_3963_pilon__uns 2157 1569 contig_3964_pilon__uns 2779 2149 contig_3967_pilon__uns 124 147 contig_396_pilon__uns 20091 21939 contig_3981_pilon__uns 2595 2815 contig_3982_pilon__uns 104 124 contig_3985_pilon__uns 8966 6260 contig_3987_pilon__uns 123 90 contig_3989_pilon__uns 1406 2249 contig_3996_pilon__uns 36747 37078 contig_3997_pilon__uns 30 33 contig_3998_pilon__uns 96 82 contig_39_pilon__uns 747 3390 contig_3_pilon__uns 1311 1628 contig_4000_pilon__uns 2653 3267 contig_4011_pilon__uns 98 113 contig_4015_pilon__uns 358 843 contig_401_pilon__uns 1701 1266 contig_4034_pilon__uns 544 14 contig_4036_pilon__uns 179 79 contig_4039_pilon__uns 480 955 contig_4042_pilon__uns 1586 1178 contig_4056_pilon__uns 1302 1547 contig_4067_pilon__uns 37331 36991 contig_4069_pilon__uns 915 798 contig_4074_pilon__uns 429 180 contig_407_pilon__uns 5285 5827 contig_4081_pilon__uns 323 84 contig_4082_pilon__uns 188 182 contig_4083_pilon__uns 3037 4134 contig_4089_pilon__uns 301 213 contig_4091_pilon__uns 2271 2561 contig_4092_pilon__uns 1437 2318 contig_40_pilon__uns 734 2683 contig_4100_pilon__uns 848 741 contig_4105_pilon__uns 4256 4839 contig_4109_pilon__uns 1193 1394 contig_4111_pilon__uns 159 305 contig_4115_pilon__uns 1249 1023 contig_4118_pilon__uns 1886 113 contig_4120_pilon___frag_2___debris__uns 810 648 contig_4126_pilon__uns 8508 5908 contig_4132_pilon__uns 3719 3238 contig_4135_pilon__uns 117 168 contig_4138_pilon__uns 311 9 contig_4139_pilon__uns 672 927 contig_4141_pilon__uns 677 495 contig_4148_pilon__uns 370 268 contig_414_pilon__uns 40637 42375 contig_4152_pilon__uns 726 417 contig_4157_pilon__uns 12277 18114 contig_415_pilon__uns 734 686 contig_4161_pilon__uns 654 3624 contig_4163_pilon__uns 414 371 contig_4165_pilon__uns 303 592 contig_4169_pilon__uns 11038 10328 contig_4182_pilon__uns 46396 48949 contig_4188_pilon__uns 1051 1208 contig_4189_pilon__uns 138 3 contig_418_pilon__uns 17159 6350 contig_4192_pilon__uns 6335 12520 contig_4197_pilon__uns 269 261 contig_4202_pilon__uns 1306 1298 contig_4203_pilon__uns 9474 7583 contig_420_pilon__uns 4523 6567 contig_4212_pilon__uns 58503 54954 contig_4213_pilon__uns 1043 942 contig_4217_pilon__uns 3994 3993 contig_421_pilon__uns 4542 4212 contig_4221_pilon__uns 5 475 contig_4224_pilon__uns 2272 2129 contig_4225_pilon__uns 388 486 contig_4226_pilon___frag_2___debris__uns 382 340 contig_4226_pilon___frag_3__uns 7489 7663 contig_4227_pilon__uns 7292 7095 contig_4229_pilon__uns 2486 2474 contig_422_pilon__uns 9938 7969 contig_4231_pilon__uns 446 649 contig_4234_pilon__uns 844 1276 contig_4237_pilon__uns 453 222 contig_423_pilon__uns 9181 1976 contig_4242_pilon__uns 436 14 contig_4244_pilon__uns 355 34 contig_4246_pilon__uns 25455 21794 contig_424_pilon__uns 2897 4839 contig_4256_pilon__uns 3136 3850 contig_4257_pilon__uns 32150 16154 contig_4261_pilon__uns 1973 2698 contig_4263_pilon__uns 646 461 contig_4267_pilon__uns 34260 32580 contig_4268_pilon__uns 18605 21943 contig_4270_pilon__uns 4263 4124 contig_4271_pilon__uns 280 68 contig_4272_pilon__uns 419 214 contig_4274_pilon__uns 39775 43121 contig_4280_pilon__uns 74 162 contig_4281_pilon__uns 14294 14737 contig_4285_pilon__uns 4122 5680 contig_4287_pilon__uns 18770 19021 contig_4291_pilon__uns 5048 4424 contig_4294_pilon__uns 2047 2457 contig_4295_pilon__uns 388 552 contig_4297_pilon__uns 4806 3827 contig_429_pilon__uns 14257 6465 contig_4301_pilon__uns 841 789 contig_4307_pilon__uns 1598 3055 contig_4314_pilon__uns 298 26 contig_4319_pilon__uns 4804 3721 contig_4324_pilon__uns 493 361 contig_4326_pilon__uns 1892 2624 contig_4328_pilon__uns 18237 19989 contig_4335_pilon__uns 32698 34847 contig_4336_pilon__uns 12998 13362 contig_4340_pilon__uns 951 1084 contig_4342_pilon__uns 1404 300 contig_4345_pilon__uns 7259 7270 contig_4347_pilon__uns 405 433 contig_4350_pilon__uns 1084 861 contig_4353_pilon__uns 3715 4005 contig_4356_pilon__uns 6651 6688 contig_435_pilon__uns 4649 4088 contig_4377_pilon__uns 75 124 contig_4378_pilon__uns 19622 20387 contig_437_pilon__uns 2017 2380 contig_4380_pilon__uns 6229 4687 contig_4389_pilon__uns 21839 22379 contig_4391_pilon__uns 748 556 contig_4392_pilon___frag_1__uns 10639 9783 contig_4392_pilon___frag_2___debris__uns 1086 813 contig_4392_pilon___frag_3__uns 5616 6174 contig_4394_pilon__uns 11641 10133 contig_4397_pilon__uns 275 261 contig_4401_pilon___frag_1__uns 26737 29875 contig_4401_pilon___frag_2___debris__uns 7 573 contig_4401_pilon___frag_3__uns 642 9331 contig_4401_pilon___frag_4___debris__uns 177 168 contig_4401_pilon___frag_5__uns 25084 17989 contig_4404_pilon__uns 662 348 contig_4406_pilon__uns 16781 14079 contig_4408_pilon__uns 239 134 contig_440_pilon__uns 32462 29186 contig_4412_pilon__uns 5004 5167 contig_4413_pilon__uns 12196 10262 contig_4416_pilon__uns 3345 2912 contig_4424_pilon___frag_2___debris__uns 777 1095 contig_4426_pilon__uns 712 543 contig_4427_pilon__uns 11251 10837 contig_442_pilon__uns 7141 6844 contig_4435_pilon__uns 9491 8569 contig_4441_pilon__uns 24921 27812 contig_444_pilon___frag_1__uns 11007 1525 contig_444_pilon___frag_10___debris__uns 231 597 contig_444_pilon___frag_11__uns 19367 22817 contig_444_pilon___frag_2___debris__uns 184 279 contig_444_pilon___frag_3__uns 4416 4447 contig_444_pilon___frag_4___debris__uns 233 318 contig_444_pilon___frag_5__uns 5127 5100 contig_444_pilon___frag_6___debris__uns 174 150 contig_444_pilon___frag_7__uns 7068 7370 contig_444_pilon___frag_8___debris__uns 126 315 contig_444_pilon___frag_9___frag_1__uns 4434 5176 contig_444_pilon___frag_9___frag_2___debris__uns 66 2708 contig_444_pilon___frag_9___frag_3__uns 5446 24859 contig_4451_pilon__uns 5478 5208 contig_4456_pilon__uns 104 37 contig_4460_pilon__uns 52976 53022 contig_4464_pilon__uns 8496 8384 contig_4466_pilon__uns 13388 11069 contig_4468_pilon__uns 44863 40231 contig_4469_pilon__uns 568 667 contig_446_pilon__uns 3319 3838 contig_4471_pilon__uns 2471 1794 contig_4472_pilon__uns 958 763 contig_4480_pilon__uns 12118 13276 contig_4494_pilon__uns 72 133 contig_4496_pilon__uns 95 139 contig_4506_pilon__uns 26405 27707 contig_4510_pilon__uns 106 203 contig_4517_pilon__uns 40823 42795 contig_4519_pilon__uns 35891 29726 contig_4520_pilon___frag_2___debris__uns 807 832 contig_4524_pilon__uns 189 183 contig_4530_pilon__uns 16537 17298 contig_4535_pilon__uns 125 114 contig_4539_pilon__uns 6098 5541 contig_453_pilon__uns 266 310 contig_4540_pilon__uns 15223 17112 contig_4554_pilon__uns 392 327 contig_456_pilon___frag_2___debris__uns 959 965 contig_4570_pilon__uns 25230 23301 contig_4571_pilon__uns 405 324 contig_4583_pilon__uns 3023 2498 contig_4586_pilon__uns 2300 3179 contig_4588_pilon___frag_2___debris__uns 1151 1393 contig_4602_pilon__uns 6131 5942 contig_4610_pilon__uns 249 178 contig_4618_pilon__uns 33801 31090 contig_4619_pilon__uns 298 510 contig_4623_pilon__uns 12063 11351 contig_4634_pilon__uns 725 427 contig_4636_pilon__uns 80 1259 contig_4641_pilon__uns 406 427 contig_4643_pilon__uns 3953 4933 contig_4644_pilon__uns 15 14 contig_4647_pilon__uns 786 794 contig_464_pilon__uns 22786 23218 contig_4663_pilon__uns 27047 23070 contig_4664_pilon__uns 9585 10085 contig_4667_pilon__uns 11053 10667 contig_4672_pilon__uns 34220 35608 contig_4678_pilon__uns 9031 12016 contig_4680_pilon___frag_1__uns 4482 4554 contig_4680_pilon___frag_2___debris__uns 401 496 contig_4680_pilon___frag_3__uns 6694 6737 contig_4680_pilon___frag_4___debris__uns 1469 863 contig_4693_pilon__uns 1264 1341 contig_4707_pilon__uns 14458 14365 contig_4709_pilon__uns 5149 4018 contig_4718_pilon__uns 454 532 contig_4727_pilon__uns 1173 1467 contig_4728_pilon___frag_1__uns 21250 20394 contig_4728_pilon___frag_2___debris__uns 1592 522 contig_4731_pilon__uns 1576 1288 contig_4733_pilon__uns 28618 26435 contig_4741_pilon__uns 5547 6409 contig_4742_pilon__uns 180 192 contig_4752_pilon__uns 76 107 contig_4757_pilon__uns 17910 15651 contig_4763_pilon__uns 23417 20764 contig_4765_pilon__uns 107 122 contig_476_pilon__uns 16071 17597 contig_4771_pilon__uns 29633 25801 contig_4773_pilon__uns 53 2553 contig_4774_pilon__uns 142 173 contig_4779_pilon__uns 6674 6540 contig_477_pilon__uns 8271 8751 contig_4802_pilon__uns 5866 5830 contig_4803_pilon__uns 12690 16196 contig_4805_pilon__uns 89 160 contig_4809_pilon__uns 1185 1597 contig_480_pilon__uns 1108 1266 contig_4811_pilon__uns 639 559 contig_4812_pilon__uns 860 766 contig_4814_pilon__uns 697 944 contig_4820_pilon__uns 1534 1267 contig_4821_pilon__uns 3357 3677 contig_4829_pilon__uns 585 53 contig_482_pilon__uns 37035 39506 contig_4830_pilon__uns 32 1681 contig_4834_pilon__uns 6084 5857 contig_4843_pilon__uns 77325 76112 contig_4854_pilon__uns 11965 11676 contig_4859_pilon__uns 5658 4166 contig_485_pilon__uns 12081 12026 contig_486_pilon__uns 13402 12820 contig_4873_pilon__uns 28 124 contig_4877_pilon__uns 4831 5327 contig_4888_pilon__uns 1074 513 contig_4894_pilon__uns 313 463 contig_489_pilon__uns 6258 3507 contig_4904_pilon__uns 425 885 contig_4905_pilon__uns 149 115 contig_4909_pilon__uns 383 57 contig_4915_pilon__uns 1472 1272 contig_4919_pilon__uns 146 479 contig_4927_pilon__uns 423 451 contig_4929_pilon__uns 174 136 contig_4936_pilon__uns 10553 10428 contig_4938_pilon__uns 42021 36812 contig_4941_pilon__uns 748 1025 contig_4942_pilon__uns 23604 21116 contig_4944_pilon__uns 4128 6845 contig_4947_pilon__uns 3623 8477 contig_4950_pilon__uns 10794 10985 contig_4953_pilon__uns 192 133 contig_4955_pilon__uns 19118 19280 contig_4965_pilon__uns 1168 605 contig_4966_pilon__uns 11029 11181 contig_4968_pilon___frag_2___debris__uns 614 676 contig_4970_pilon__uns 4784 4849 contig_4972_pilon__uns 42 294 contig_497_pilon__uns 8564 8021 contig_4996_pilon__uns 867 610 contig_4999_pilon__uns 477 631 contig_499_pilon__uns 976 870 contig_49_pilon__uns 9185 9792 contig_5002_pilon__uns 17682 21105 contig_5003_pilon__uns 1410 1154 contig_5007_pilon__uns 131 200 contig_5014_pilon__uns 16195 14006 contig_5015_pilon__uns 14437 13278 contig_5018_pilon__uns 268 216 contig_5019_pilon__uns 1306 1074 contig_5025_pilon__uns 11924 12526 contig_5029_pilon__uns 2147 2162 contig_5034_pilon__uns 812 1051 contig_5036_pilon__uns 1794 959 contig_5042_pilon__uns 47510 47778 contig_5043_pilon__uns 175 135 contig_5049_pilon__uns 168 208 contig_5053_pilon__uns 2266 2191 contig_5058_pilon__uns 238 121 contig_5059_pilon__uns 4137 5123 contig_505_pilon__uns 355 310 contig_5065_pilon__uns 6364 7072 contig_5066_pilon__uns 15673 21764 contig_5070_pilon__uns 23199 19779 contig_5071_pilon__uns 80 118 contig_5074_pilon__uns 812 789 contig_5081_pilon__uns 5562 4705 contig_5082_pilon__uns 554 77 contig_5084_pilon__uns 435 337 contig_5090_pilon__uns 12166 15083 contig_5093_pilon__uns 135 350 contig_5099_pilon__uns 15468 18716 contig_50_pilon__uns 31200 38714 contig_5107_pilon__uns 885 770 contig_5112_pilon__uns 6580 6267 contig_5118_pilon__uns 205 69 contig_5119_pilon__uns 802 1171 contig_511_pilon__uns 752 838 contig_5123_pilon___frag_1__uns 41747 37247 contig_5123_pilon___frag_2___debris__uns 109 4 contig_5126_pilon__uns 6265 6053 contig_5127_pilon__uns 21499 23217 contig_5132_pilon__uns 143 273 contig_5135_pilon___frag_2___debris__uns 137 133 contig_5135_pilon___frag_3__uns 48443 48856 contig_5138_pilon__uns 1278 1118 contig_5144_pilon__uns 48 118 contig_5149_pilon__uns 4635 4124 contig_514_pilon__uns 13830 13180 contig_5160_pilon__uns 26397 23701 contig_5162_pilon__uns 530 658 contig_5175_pilon__uns 8355 8634 contig_5176_pilon__uns 68 89 contig_5178_pilon__uns 10978 12161 contig_5183_pilon__uns 2951 2310 contig_5190_pilon__uns 47878 47990 contig_5193_pilon__uns 186 194 contig_5195_pilon__uns 593 1070 contig_5198_pilon__uns 1523 1165 contig_5211_pilon__uns 24729 23341 contig_5213_pilon___frag_2___debris__uns 299 377 contig_5223_pilon__uns 381 409 contig_5226_pilon__uns 30057 34048 contig_522_pilon__uns 934 645 contig_5235_pilon__uns 456 321 contig_5236_pilon__uns 10831 9090 contig_5237_pilon__uns 75 91 contig_523_pilon___frag_1__uns 4833 5803 contig_523_pilon___frag_2___debris__uns 955 1224 contig_523_pilon___frag_3__uns 11210 11423 contig_5244_pilon__uns 245 163 contig_5246_pilon__uns 14696 12785 contig_5250_pilon__uns 1833 1397 contig_5253_pilon__uns 77 145 contig_5257_pilon__uns 407 323 contig_5258_pilon__uns 7240 8639 contig_5259_pilon__uns 366 216 contig_5262_pilon__uns 519 503 contig_5266_pilon__uns 338 252 contig_5272_pilon__uns 505 391 contig_5274_pilon__uns 178 87 contig_5276_pilon__uns 12011 10149 contig_5286_pilon__uns 20440 19549 contig_5295_pilon__uns 29341 30284 contig_5299_pilon__uns 33644 31869 contig_5306_pilon__uns 243 90 contig_533_pilon___frag_2___debris__uns 710 1324 contig_5343_pilon__uns 280 339 contig_5345_pilon__uns 1204 1209 contig_5354_pilon__uns 2117 3068 contig_5357_pilon___frag_1__uns 18306 18223 contig_5357_pilon___frag_2___debris__uns 667 380 contig_535_pilon__uns 1444 1432 contig_5363_pilon__uns 17373 14461 contig_5366_pilon__uns 534 608 contig_5373_pilon__uns 4932 14310 contig_5379_pilon__uns 48576 56600 contig_5388_pilon__uns 7213 8237 contig_5394_pilon__uns 304 366 contig_5397_pilon__uns 1325 1097 contig_5398_pilon__uns 16656 16788 contig_539_pilon__uns 9550 8370 contig_5408_pilon__uns 3268 2499 contig_5409_pilon__uns 386 61 contig_540_pilon__uns 18610 17724 contig_5411_pilon__uns 104 70 contig_5412_pilon__uns 107 107 contig_5414_pilon__uns 17024 15756 contig_5415_pilon__uns 25174 24879 contig_5427_pilon__uns 1350 584 contig_5431_pilon__uns 1225 1519 contig_5434_pilon__uns 23908 22457 contig_5436_pilon__uns 4830 4038 contig_5437_pilon__uns 6771 6819 contig_543_pilon__uns 11410 9201 contig_5443_pilon__uns 906 877 contig_5444_pilon__uns 7013 6083 contig_5446_pilon__uns 11574 5541 contig_5451_pilon__uns 1666 272 contig_5456_pilon__uns 128 128 contig_5458_pilon__uns 2449 2673 contig_5479_pilon__uns 19787 17764 contig_547_pilon__uns 24245 25565 contig_548_pilon__uns 3427 4014 contig_5493_pilon__uns 547 432 contig_5499_pilon__uns 5491 5758 contig_54_pilon__uns 7504 5845 contig_5504_pilon__uns 247 379 contig_5522_pilon__uns 12163 10917 contig_5526_pilon__uns 14825 13335 contig_5532_pilon__uns 8682 6104 contig_5533_pilon__uns 846 412 contig_5537_pilon__uns 106 120 contig_5540_pilon__uns 14 77 contig_5562_pilon__uns 882 780 contig_5564_pilon__uns 288 147 contig_5565_pilon__uns 33024 35293 contig_5571_pilon__uns 19728 22220 contig_5583_pilon__uns 605 596 contig_5586_pilon__uns 110 68 contig_5587_pilon__uns 21306 21163 contig_5589_pilon__uns 4789 4497 contig_5590_pilon__uns 3220 3321 contig_5593_pilon__uns 1170 1718 contig_5594_pilon__uns 4841 5064 contig_5596_pilon__uns 20902 22690 contig_5603_pilon__uns 193 171 contig_5606_pilon__uns 171 137 contig_5609_pilon__uns 7444 8497 contig_5620_pilon__uns 1506 1111 contig_5623_pilon__uns 10931 12180 contig_5630_pilon__uns 6750 6832 contig_5631_pilon__uns 501 434 contig_5634_pilon__uns 12506 22974 contig_5637_pilon__uns 23579 25724 contig_5641_pilon__uns 94 115 contig_5645_pilon__uns 490 465 contig_5647_pilon__uns 8654 13119 contig_5649_pilon__uns 590 791 contig_564_pilon__uns 2086 2740 contig_5652_pilon__uns 572 1147 contig_5653_pilon__uns 184 76 contig_5656_pilon__uns 2309 2315 contig_5657_pilon__uns 22727 11054 contig_5658_pilon__uns 273 264 contig_5669_pilon__uns 49 40 contig_5676_pilon__uns 1602 1355 contig_5678_pilon__uns 18 361 contig_5679_pilon__uns 9612 9230 contig_567_pilon__uns 130 451 contig_5681_pilon__uns 923 853 contig_5688_pilon__uns 10325 11286 contig_5689_pilon__uns 2327 3226 contig_5693_pilon__uns 57 63 contig_5696_pilon__uns 10244 9104 contig_5706_pilon__uns 266 82 contig_5708_pilon__uns 6088 5547 contig_5713_pilon__uns 53390 48046 contig_5714_pilon__uns 15800 16575 contig_5715_pilon__uns 21483 21228 contig_5717_pilon__uns 7023 7361 contig_5718_pilon__uns 5555 5874 contig_5719_pilon__uns 379 539 contig_5729_pilon__uns 1081 1083 contig_572_pilon__uns 5571 5185 contig_5736_pilon__uns 16828 16022 contig_5742_pilon__uns 1137 744 contig_5746_pilon__uns 21676 19452 contig_5748_pilon__uns 47288 42803 contig_574_pilon__uns 1655 1213 contig_5751_pilon__uns 1382 1526 contig_5752_pilon__uns 1020 801 contig_5756_pilon__uns 108 122 contig_5758_pilon__uns 10947 10675 contig_5765_pilon__uns 22458 26905 contig_5768_pilon__uns 2203 2028 contig_5773_pilon__uns 617 616 contig_5775_pilon__uns 14 323 contig_5777_pilon__uns 624 1130 contig_5778_pilon__uns 443 196 contig_5782_pilon__uns 1665 2310 contig_5784_pilon__uns 12486 12227 contig_5791_pilon__uns 284 229 contig_5792_pilon__uns 218 113 contig_5793_pilon__uns 2993 3251 contig_5794_pilon__uns 471 403 contig_5796_pilon__uns 15769 13978 contig_5799_pilon__uns 5452 7023 contig_579_pilon__uns 754 587 contig_5800_pilon__uns 2607 3082 contig_5801_pilon__uns 1691 2117 contig_5802_pilon__uns 19338 23484 contig_5803_pilon__uns 4886 4870 contig_580_pilon__uns 129 105 contig_5812_pilon__uns 125 99 contig_5813_pilon__uns 626 885 contig_5818_pilon__uns 1863 2553 contig_5819_pilon__uns 264 235 contig_581_pilon__uns 394 317 contig_5824_pilon___frag_1__uns 13191 13402 contig_5824_pilon___frag_2___debris__uns 673 555 contig_5824_pilon___frag_3__uns 2871 3892 contig_5825_pilon__uns 961 1354 contig_5828_pilon__uns 27943 19342 contig_5829_pilon__uns 22161 19223 contig_5831_pilon__uns 627 471 contig_5833_pilon__uns 19961 21589 contig_5834_pilon__uns 644 472 contig_5835_pilon__uns 102 132 contig_5844_pilon__uns 11614 10304 contig_5845_pilon__uns 9926 10268 contig_5846_pilon__uns 11847 12778 contig_5848_pilon__uns 11 442 contig_5849_pilon__uns 11272 11011 contig_5851_pilon__uns 1952 1598 contig_5854_pilon__uns 12932 10464 contig_5856_pilon__uns 123 147 contig_5858_pilon__uns 13 11 contig_585_pilon__uns 21239 22261 contig_5861_pilon__uns 573 617 contig_5865_pilon__uns 76 297 contig_5867_pilon__uns 249 522 contig_5873_pilon__uns 18012 18226 contig_5877_pilon__uns 650 932 contig_5878_pilon__uns 383 17 contig_5883_pilon__uns 895 897 contig_5885_pilon__uns 407 317 contig_5886_pilon__uns 107 168 contig_5889_pilon__uns 2148 1398 contig_5890_pilon__uns 73 201 contig_5892_pilon__uns 20849 18868 contig_5894_pilon__uns 6228 4620 contig_5896_pilon__uns 21180 21283 contig_5897_pilon__uns 326 494 contig_5899_pilon__uns 202 133 contig_58_pilon__uns 8718 8213 contig_5900_pilon__uns 448 548 contig_5904_pilon__uns 4558 3954 contig_5906_pilon__uns 390 553 contig_590_pilon__uns 5881 7141 contig_5911_pilon__uns 109 107 contig_5914_pilon__uns 427 578 contig_5916_pilon__uns 12576 11886 contig_5918_pilon__uns 12924 12543 contig_5919_pilon__uns 445 123 contig_591_pilon___frag_2___debris__uns 566 654 contig_5923_pilon__uns 478 99 contig_5924_pilon__uns 27629 29631 contig_5926_pilon__uns 756 602 contig_5928_pilon__uns 749 675 contig_592_pilon__uns 11132 8259 contig_5931_pilon___frag_2___debris__uns 506 427 contig_5932_pilon__uns 5957 4729 contig_5937_pilon__uns 29980 29815 contig_5940_pilon__uns 50723 49355 contig_5942_pilon__uns 297 353 contig_5947_pilon__uns 544 572 contig_5948_pilon__uns 131 107 contig_5958_pilon__uns 377 254 contig_5964_pilon__uns 5326 5262 contig_5967_pilon__uns 421 124 contig_596_pilon__uns 283 91 contig_5971_pilon__uns 56321 54703 contig_5974_pilon__uns 72 16 contig_5975_pilon__uns 206 335 contig_5977_pilon__uns 3067 2329 contig_5981_pilon__uns 411 82 contig_5_pilon__uns 259 330 contig_6001_pilon__uns 362 685 contig_6003_pilon__uns 388 637 contig_6004_pilon__uns 59 23 contig_600_pilon___frag_2___debris__uns 634 671 contig_6024_pilon__uns 812 111 contig_6029_pilon__uns 1620 356 contig_6030_pilon__uns 812 596 contig_6031_pilon__uns 2726 2171 contig_6034_pilon__uns 108 46 contig_6036_pilon__uns 428 573 contig_6038_pilon__uns 715 796 contig_6040_pilon__uns 14386 13764 contig_6042_pilon__uns 534 1456 contig_6047_pilon__uns 1901 921 contig_6048_pilon__uns 148 139 contig_6049_pilon__uns 333 322 contig_6051_pilon__uns 585 348 contig_6053_pilon__uns 2632 3377 contig_6054_pilon__uns 333 511 contig_6055_pilon__uns 1343 1278 contig_6059_pilon__uns 283 365 contig_6062_pilon__uns 475 522 contig_6063_pilon__uns 8184 8614 contig_6064_pilon__uns 13815 14432 contig_6068_pilon__uns 117 139 contig_6069_pilon__uns 126 121 contig_6071_pilon__uns 16 612 contig_6074_pilon__uns 22 25 contig_6075_pilon__uns 149 54 contig_6076_pilon__uns 2970 3421 contig_6078_pilon__uns 177 241 contig_6079_pilon__uns 206 326 contig_607_pilon___frag_1__uns 34912 32045 contig_607_pilon___frag_2___debris__uns 681 434 contig_6085_pilon__uns 69 543 contig_6087_pilon__uns 2267 2027 contig_6088_pilon__uns 292 239 contig_6092_pilon__uns 9246 7729 contig_6095_pilon__uns 368 376 contig_6096_pilon__uns 1427 702 contig_6099_pilon__uns 265 536 contig_6101_pilon__uns 1946 1308 contig_6108_pilon__uns 277 272 contig_6109_pilon__uns 75 122 contig_6110_pilon__uns 116 126 contig_6115_pilon__uns 452 361 contig_6117_pilon__uns 120 264 contig_6119_pilon__uns 116 87 contig_611_pilon__uns 27103 31560 contig_6121_pilon__uns 11020 8924 contig_6128_pilon__uns 763 668 contig_6131_pilon__uns 833 993 contig_6135_pilon__uns 922 1103 contig_6136_pilon__uns 20235 19892 contig_6137_pilon__uns 1237 585 contig_6139_pilon__uns 799 1023 contig_613_pilon__uns 123 115 contig_6143_pilon__uns 2067 1493 contig_6146_pilon__uns 1692 1589 contig_6147_pilon__uns 263 404 contig_614_pilon__uns 691 525 contig_6151_pilon__uns 6509 6213 contig_6154_pilon__uns 4273 3443 contig_6156_pilon__uns 87 206 contig_6157_pilon__uns 624 47 contig_6162_pilon__uns 336 416 contig_6163_pilon__uns 1938 8073 contig_6164_pilon__uns 613 787 contig_6165_pilon__uns 82 83 contig_6167_pilon__uns 533 511 contig_6168_pilon__uns 375 647 contig_6175_pilon__uns 14944 15552 contig_618_pilon__uns 1115 945 contig_6190_pilon__uns 167 241 contig_6194_pilon__uns 180 209 contig_6195_pilon__uns 643 763 contig_6197_pilon__uns 717 400 contig_61_pilon__uns 7911 12700 contig_6202_pilon__uns 133 103 contig_6206_pilon__uns 543 680 contig_620_pilon___frag_2___debris__uns 1067 1282 contig_6210_pilon__uns 129 101 contig_6212_pilon__uns 604 355 contig_6219_pilon__uns 910 792 contig_6224_pilon__uns 1879 1613 contig_6232_pilon__uns 18 18 contig_623_pilon__uns 2473 3593 contig_6240_pilon__uns 2 91 contig_6242_pilon__uns 283 361 contig_6251_pilon__uns 205 45 contig_6255_pilon__uns 399 489 contig_6256_pilon__uns 263 208 contig_6257_pilon__uns 28 51 contig_6258_pilon__uns 9800 8819 contig_6259_pilon__uns 112 168 contig_6260_pilon__uns 618 333 contig_6267_pilon__uns 19720 20080 contig_6269_pilon__uns 4891 4752 contig_626_pilon__uns 6463 5308 contig_6270_pilon__uns 562 354 contig_6272_pilon__uns 655 30 contig_6273_pilon__uns 377 371 contig_627_pilon__uns 1111 690 contig_6282_pilon__uns 326 366 contig_6284_pilon__uns 3306 2539 contig_6289_pilon__uns 551 700 contig_6291_pilon__uns 249 340 contig_6293_pilon__uns 10 144 contig_6297_pilon__uns 12714 12812 contig_6298_pilon__uns 287 353 contig_62_pilon__uns 10897 12546 contig_6303_pilon__uns 812 690 contig_6313_pilon__uns 11713 6631 contig_6314_pilon__uns 14015 15111 contig_6322_pilon__uns 136 80 contig_6323_pilon__uns 1564 1471 contig_6327_pilon__uns 119 81 contig_6334_pilon__uns 6789 8238 contig_6336_pilon__uns 219 351 contig_6338_pilon__uns 762 5 contig_633_pilon__uns 72664 73419 contig_6340_pilon__uns 2444 1803 contig_6347_pilon__uns 2942 4874 contig_6353_pilon__uns 25 149 contig_6356_pilon__uns 158 91 contig_6362_pilon__uns 212 265 contig_6363_pilon__uns 30268 30393 contig_6364_pilon__uns 3228 3052 contig_6365_pilon__uns 10297 6422 contig_6368_pilon__uns 730 608 contig_6369_pilon__uns 651 441 contig_6371_pilon__uns 151 161 contig_6375_pilon__uns 50 43 contig_6377_pilon__uns 211 125 contig_6385_pilon__uns 56 92 contig_6388_pilon__uns 125 79 contig_6393_pilon__uns 263 200 contig_6402_pilon__uns 250 261 contig_6404_pilon__uns 6643 8341 contig_6405_pilon__uns 818 726 contig_6407_pilon__uns 7309 9731 contig_6408_pilon__uns 4688 6058 contig_6410_pilon__uns 180 143 contig_6411_pilon__uns 387 527 contig_6413_pilon__uns 1310 923 contig_6420_pilon__uns 292 277 contig_6425_pilon__uns 1719 1426 contig_6427_pilon__uns 3576 3054 contig_642_pilon__uns 20373 20057 contig_6430_pilon__uns 18575 16868 contig_6432_pilon__uns 247 240 contig_6434_pilon__uns 472 600 contig_6436_pilon__uns 428 537 contig_643_pilon__uns 7365 9083 contig_6440_pilon__uns 167 73 contig_6444_pilon__uns 6329 5197 contig_6445_pilon__uns 1472 76 contig_6447_pilon__uns 177 116 contig_6449_pilon__uns 264 168 contig_644_pilon__uns 7379 9549 contig_6451_pilon__uns 991 1109 contig_6452_pilon__uns 791 809 contig_6459_pilon__uns 267 298 contig_6461_pilon__uns 853 892 contig_6462_pilon__uns 1290 1244 contig_6469_pilon__uns 302 401 contig_6470_pilon__uns 237 300 contig_6471_pilon__uns 233 152 contig_6477_pilon__uns 523 321 contig_6479_pilon__uns 817 1022 contig_6480_pilon__uns 80 435 contig_6494_pilon__uns 17 491 contig_6496_pilon__uns 329 650 contig_6498_pilon__uns 947 682 contig_64_pilon___frag_2___debris__uns 1120 942 contig_64_pilon___frag_3__uns 11425 6960 contig_6501_pilon__uns 275 315 contig_6503_pilon__uns 718 278 contig_6505_pilon__uns 298 322 contig_6514_pilon__uns 333 308 contig_6515_pilon__uns 304 370 contig_6518_pilon__uns 8781 8334 contig_6529_pilon__uns 1516 1675 contig_652_pilon__uns 3070 3498 contig_6536_pilon__uns 3257 2333 contig_6537_pilon__uns 133 102 contig_6540_pilon__uns 357 549 contig_6541_pilon__uns 20073 19547 contig_6544_pilon__uns 247 407 contig_6547_pilon__uns 25 19 contig_6549_pilon__uns 324 241 contig_6551_pilon__uns 28114 28703 contig_655_pilon__uns 187 138 contig_6562_pilon__uns 28383 26352 contig_6565_pilon__uns 145 187 contig_6568_pilon__uns 814 606 contig_656_pilon__uns 3997 3643 contig_6576_pilon__uns 1698 2035 contig_6577_pilon__uns 377 149 contig_6579_pilon__uns 104 61 contig_6581_pilon__uns 9562 9558 contig_6588_pilon__uns 1650 2139 contig_6590_pilon__uns 906 1511 contig_6592_pilon__uns 146 142 contig_6597_pilon__uns 341 1134 contig_6606_pilon__uns 103 186 contig_6609_pilon__uns 183 156 contig_6615_pilon__uns 11923 10721 contig_6617_pilon__uns 374 494 contig_6619_pilon__uns 11906 14328 contig_661_pilon__uns 13748 13461 contig_6622_pilon__uns 5623 4544 contig_6629_pilon__uns 468 349 contig_6630_pilon__uns 933 927 contig_6637_pilon__uns 10188 11486 contig_6638_pilon__uns 264 199 contig_6647_pilon__uns 908 1184 contig_6652_pilon__uns 8977 13109 contig_6657_pilon__uns 352 0 contig_6660_pilon__uns 86 94 contig_6661_pilon__uns 273 187 contig_6664_pilon__uns 540 225 contig_6665_pilon__uns 3641 13876 contig_6667_pilon__uns 47404 38648 contig_6670_pilon__uns 20796 2592 contig_6671_pilon__uns 429 489 contig_6672_pilon__uns 772 587 contig_6673_pilon__uns 370 641 contig_6675_pilon__uns 245 239 contig_6677_pilon__uns 743 391 contig_6680_pilon__uns 1799 2462 contig_6683_pilon__uns 474 1101 contig_6687_pilon__uns 1905 1605 contig_668_pilon__uns 1046 1503 contig_6697_pilon__uns 1540 726 contig_6698_pilon__uns 10953 26943 contig_669_pilon___frag_2___debris__uns 748 471 contig_6701_pilon__uns 262 277 contig_6704_pilon__uns 209 144 contig_6709_pilon__uns 550 482 contig_670_pilon__uns 2248 1704 contig_6715_pilon__uns 481 465 contig_6719_pilon__uns 316 531 contig_6721_pilon__uns 2369 4081 contig_6725_pilon__uns 211 222 contig_6733_pilon__uns 515 373 contig_6735_pilon__uns 139 137 contig_6739_pilon__uns 67 158 contig_6750_pilon__uns 62067 62923 contig_6753_pilon__uns 56 68 contig_675_pilon__uns 18415 21984 contig_6760_pilon__uns 312 387 contig_6761_pilon__uns 6760 7097 contig_6764_pilon__uns 30099 31913 contig_6768_pilon__uns 236 83 contig_6770_pilon__uns 2100 2257 contig_6772_pilon__uns 110 137 contig_6779_pilon__uns 7643 8411 contig_6780_pilon__uns 223 237 contig_6787_pilon__uns 453 604 contig_6793_pilon__uns 259 245 contig_6796_pilon__uns 898 699 contig_6799_pilon__uns 320 312 contig_679_pilon___frag_1__uns 33424 33829 contig_679_pilon___frag_2___debris__uns 1252 957 contig_679_pilon___frag_3__uns 22515 23675 contig_6802_pilon__uns 3943 3030 contig_6807_pilon__uns 31844 27424 contig_680_pilon__uns 2017 1989 contig_6811_pilon__uns 1538 1330 contig_6813_pilon__uns 574 736 contig_6822_pilon__uns 20018 19355 contig_6823_pilon__uns 614 703 contig_6824_pilon__uns 3537 3106 contig_6826_pilon__uns 156 133 contig_6829_pilon__uns 113 47 contig_6833_pilon__uns 108 425 contig_6836_pilon__uns 648 492 contig_6841_pilon__uns 204 47 contig_6843_pilon__uns 131 139 contig_6844_pilon__uns 286 234 contig_6845_pilon__uns 496 490 contig_684_pilon__uns 683 841 contig_6855_pilon__uns 206 240 contig_6858_pilon__uns 389 943 contig_6859_pilon__uns 188 204 contig_6860_pilon__uns 8184 7926 contig_6861_pilon__uns 653 916 contig_6865_pilon__uns 1257 1723 contig_6866_pilon__uns 569 849 contig_6869_pilon__uns 1021 1367 contig_686_pilon__uns 13386 15375 contig_6870_pilon__uns 514 403 contig_6872_pilon__uns 277 470 contig_6875_pilon__uns 267 106 contig_6876_pilon__uns 19108 14676 contig_6885_pilon__uns 60 174 contig_6886_pilon__uns 1432 1628 contig_6891_pilon__uns 3822 5055 contig_6892_pilon__uns 78 111 contig_6897_pilon__uns 1605 1409 contig_6898_pilon__uns 1838 1934 contig_6899_pilon__uns 307 305 contig_689_pilon__uns 2125 2235 contig_6901_pilon__uns 18470 14483 contig_6905_pilon__uns 1817 1335 contig_6906_pilon__uns 6508 5674 contig_6913_pilon__uns 22394 24972 contig_6915_pilon__uns 2416 3618 contig_6916_pilon__uns 7366 7595 contig_6918_pilon__uns 9463 10173 contig_6919_pilon__uns 192 213 contig_6921_pilon__uns 131 80 contig_6922_pilon__uns 1072 1301 contig_692_pilon__uns 54942 54367 contig_6932_pilon__uns 37881 35539 contig_6939_pilon__uns 1380 1371 contig_6949_pilon__uns 455 575 contig_6950_pilon__uns 95 88 contig_6958_pilon__uns 352 313 contig_6959_pilon__uns 193 216 contig_6966_pilon__uns 237 132 contig_6967_pilon__uns 119 135 contig_6970_pilon__uns 432 230 contig_6974_pilon__uns 1010 1186 contig_6976_pilon__uns 300 264 contig_6979_pilon__uns 1900 2070 contig_6982_pilon__uns 916 1602 contig_6983_pilon__uns 174 172 contig_6987_pilon__uns 14017 12986 contig_6998_pilon__uns 112 246 contig_7001_pilon__uns 487 651 contig_7003_pilon__uns 640 827 contig_7004_pilon___frag_2___debris__uns 206 117 contig_7006_pilon__uns 11859 9361 contig_7008_pilon__uns 456 487 contig_7011_pilon__uns 293 425 contig_7013_pilon__uns 18925 18443 contig_701_pilon__uns 254 300 contig_7021_pilon__uns 476 428 contig_7023_pilon__uns 96 101 contig_7027_pilon__uns 2448 2269 contig_7028_pilon__uns 194 431 contig_7029_pilon__uns 47 79 contig_702_pilon__uns 1544 255 contig_7031_pilon__uns 4766 4802 contig_7032_pilon__uns 112 127 contig_7035_pilon__uns 498 611 contig_7044_pilon__uns 23 35 contig_7052_pilon__uns 137 173 contig_7058_pilon__uns 540 476 contig_7064_pilon__uns 5166 6567 contig_7067_pilon__uns 189 103 contig_7070_pilon__uns 9803 7776 contig_7074_pilon__uns 7517 7511 contig_7075_pilon__uns 380 237 contig_7076_pilon__uns 6506 7106 contig_7085_pilon__uns 26808 29034 contig_708_pilon__uns 185 206 contig_7090_pilon__uns 30293 31376 contig_7091_pilon__uns 444 553 contig_7094_pilon__uns 1975 1983 contig_709_pilon__uns 64 33 contig_7105_pilon__uns 362 356 contig_7107_pilon__uns 447 392 contig_710_pilon__uns 142 649 contig_7110_pilon__uns 4432 5197 contig_7111_pilon__uns 12526 8802 contig_7112_pilon__uns 141 183 contig_711_pilon__uns 153 646 contig_7120_pilon__uns 2040 1855 contig_7127_pilon__uns 17447 17347 contig_7132_pilon__uns 8782 8289 contig_7133_pilon__uns 12545 8666 contig_7134_pilon__uns 99 93 contig_7142_pilon__uns 26096 24518 contig_7144_pilon__uns 17551 15571 contig_7146_pilon__uns 9908 5654 contig_7151_pilon__uns 256 188 contig_7153_pilon__uns 461 5 contig_715_pilon__uns 6731 6713 contig_7162_pilon__uns 219 347 contig_7165_pilon__uns 93 264 contig_7169_pilon__uns 131 170 contig_716_pilon__uns 2516 2297 contig_7173_pilon__uns 412 568 contig_7174_pilon__uns 17078 18751 contig_7179_pilon__uns 4614 3801 contig_7180_pilon__uns 1869 1066 contig_7181_pilon__uns 889 731 contig_7184_pilon__uns 14376 14342 contig_718_pilon__uns 10616 6020 contig_7195_pilon__uns 406 461 contig_7201_pilon__uns 2610 1207 contig_7202_pilon__uns 5294 5571 contig_7208_pilon__uns 835 1064 contig_720_pilon__uns 393 481 contig_7210_pilon__uns 469 405 contig_7213_pilon__uns 11069 11807 contig_7215_pilon__uns 563 427 contig_7219_pilon__uns 139 188 contig_7221_pilon__uns 1289 1085 contig_7224_pilon__uns 1247 1077 contig_7230_pilon__uns 1039 1059 contig_7235_pilon__uns 24186 23262 contig_7236_pilon__uns 194 214 contig_7237_pilon__uns 4999 4595 contig_7239_pilon__uns 260 187 contig_7248_pilon__uns 3898 3665 contig_7250_pilon__uns 152 266 contig_7255_pilon__uns 5628 5821 contig_7269_pilon__uns 1971 1635 contig_726_pilon__uns 8646 8338 contig_7272_pilon__uns 16863 14187 contig_7276_pilon__uns 1839 3635 contig_7278_pilon__uns 468 505 contig_7281_pilon__uns 291 324 contig_7286_pilon__uns 450 597 contig_7293_pilon__uns 15360 5628 contig_7294_pilon__uns 4833 4934 contig_7298_pilon__uns 147 266 contig_7299_pilon__uns 117 156 contig_7303_pilon__uns 1088 744 contig_7307_pilon__uns 123 22 contig_7309_pilon__uns 1135 315 contig_7314_pilon__uns 938 1335 contig_7316_pilon__uns 4338 4604 contig_731_pilon__uns 12451 12269 contig_7321_pilon__uns 36252 30746 contig_7322_pilon__uns 212 226 contig_7329_pilon__uns 451 262 contig_732_pilon__uns 25533 26687 contig_7330_pilon__uns 974 1466 contig_7339_pilon__uns 8997 10383 contig_733_pilon__uns 22 14 contig_7342_pilon__uns 189 344 contig_7343_pilon__uns 1753 890 contig_7344_pilon__uns 297 358 contig_7345_pilon__uns 232 281 contig_7347_pilon__uns 1573 1911 contig_7350_pilon__uns 3623 3573 contig_7353_pilon__uns 27049 24839 contig_7354_pilon__uns 33 88 contig_7357_pilon__uns 146 75 contig_7359_pilon__uns 417 75 contig_735_pilon__uns 5645 7764 contig_7361_pilon__uns 176 313 contig_7365_pilon__uns 307 166 contig_7366_pilon__uns 379 332 contig_7371_pilon__uns 2630 2651 contig_7373_pilon__uns 13302 12076 contig_7374_pilon__uns 7398 6948 contig_7378_pilon__uns 26472 28716 contig_7381_pilon__uns 132 154 contig_7384_pilon__uns 4437 5445 contig_7393_pilon__uns 3200 3353 contig_7397_pilon__uns 2202 6127 contig_7401_pilon__uns 256 254 contig_7408_pilon__uns 2892 2154 contig_7410_pilon__uns 2767 2724 contig_7412_pilon__uns 10487 9119 contig_7417_pilon__uns 622 520 contig_7418_pilon__uns 9204 10449 contig_7426_pilon__uns 2115 1907 contig_7428_pilon__uns 14395 11289 contig_7429_pilon__uns 368 315 contig_7430_pilon__uns 388 268 contig_7433_pilon__uns 4450 4233 contig_7434_pilon__uns 566 652 contig_7437_pilon__uns 2267 1762 contig_7439_pilon__uns 8777 5170 contig_743_pilon__uns 735 1097 contig_7442_pilon__uns 1978 1007 contig_7443_pilon__uns 628 540 contig_7445_pilon__uns 6664 6908 contig_7446_pilon__uns 9711 9543 contig_7448_pilon__uns 9254 12223 contig_7449_pilon__uns 109 92 contig_744_pilon__uns 318 450 contig_7450_pilon__uns 90 92 contig_7453_pilon__uns 138 168 contig_7456_pilon__uns 1910 1951 contig_7459_pilon__uns 150 278 contig_7464_pilon__uns 33704 35176 contig_7467_pilon__uns 13066 8032 contig_7474_pilon__uns 192 192 contig_7476_pilon__uns 383 199 contig_7477_pilon__uns 15260 14938 contig_7481_pilon__uns 208 201 contig_7484_pilon__uns 3227 3058 contig_7487_pilon__uns 483 574 contig_7500_pilon__uns 7286 9181 contig_7507_pilon__uns 6954 6743 contig_7509_pilon__uns 306 294 contig_750_pilon__uns 11580 9980 contig_7511_pilon__uns 162 288 contig_7513_pilon__uns 989 1107 contig_7521_pilon__uns 2617 2009 contig_7525_pilon__uns 669 501 contig_7527_pilon__uns 191 53 contig_7528_pilon__uns 120 124 contig_7531_pilon__uns 128 85 contig_7533_pilon__uns 462 483 contig_7538_pilon__uns 277 300 contig_753_pilon__uns 870 961 contig_7540_pilon__uns 286 198 contig_7545_pilon__uns 843 373 contig_7556_pilon__uns 12339 10864 contig_7560_pilon__uns 5819 10688 contig_7562_pilon__uns 39 73 contig_7563_pilon__uns 294 147 contig_7565_pilon__uns 25915 14872 contig_7569_pilon__uns 979 1226 contig_756_pilon__uns 10977 8777 contig_7571_pilon__uns 111 116 contig_7572_pilon__uns 11510 8783 contig_7574_pilon__uns 65 62 contig_7575_pilon__uns 612 735 contig_7576_pilon__uns 702 920 contig_7577_pilon__uns 1029 1780 contig_7579_pilon__uns 6977 7448 contig_757_pilon__uns 34563 34732 contig_7582_pilon__uns 2332 1777 contig_7584_pilon__uns 798 1036 contig_7586_pilon__uns 860 500 contig_7587_pilon__uns 431 605 contig_7589_pilon__uns 220 161 contig_758_pilon__uns 5557 4918 contig_7590_pilon__uns 705 936 contig_7591_pilon__uns 654 715 contig_7594_pilon__uns 255 218 contig_7606_pilon__uns 570 338 contig_7607_pilon__uns 10662 9569 contig_7609_pilon__uns 5381 5433 contig_7610_pilon__uns 127 178 contig_7611_pilon__uns 703 1468 contig_7616_pilon__uns 15334 15482 contig_7619_pilon__uns 558 380 contig_7620_pilon__uns 509 419 contig_7621_pilon__uns 964 1915 contig_7629_pilon__uns 9379 9274 contig_762_pilon__uns 15383 15981 contig_7632_pilon__uns 573 1013 contig_7633_pilon__uns 8180 10105 contig_7643_pilon__uns 213 1027 contig_7645_pilon__uns 2410 1730 contig_7649_pilon__uns 1216 627 contig_7655_pilon__uns 9787 9471 contig_765_pilon__uns 52 893 contig_7662_pilon__uns 1768 1491 contig_7665_pilon__uns 373 187 contig_7668_pilon__uns 40 744 contig_7670_pilon__uns 3740 4244 contig_7672_pilon__uns 1130 1266 contig_7677_pilon__uns 618 310 contig_7683_pilon__uns 565 744 contig_7686_pilon__uns 16445 586 contig_7687_pilon__uns 6690 5728 contig_7691_pilon__uns 538 560 contig_7696_pilon__uns 497 385 contig_7699_pilon__uns 227 246 contig_7701_pilon__uns 172 189 contig_7703_pilon__uns 14542 17203 contig_7708_pilon__uns 10478 12555 contig_7712_pilon__uns 287 517 contig_7713_pilon__uns 2392 2583 contig_7714_pilon__uns 270 231 contig_7732_pilon__uns 374 374 contig_7734_pilon__uns 38031 38667 contig_7735_pilon__uns 154 274 contig_7737_pilon__uns 4640 3380 contig_7741_pilon__uns 5072 4918 contig_7742_pilon__uns 2212 2344 contig_7743_pilon__uns 4830 4071 contig_7754_pilon__uns 1893 1731 contig_7755_pilon__uns 8425 8790 contig_7756_pilon__uns 125 119 contig_7762_pilon__uns 9830 8568 contig_7765_pilon__uns 6066 5771 contig_7767_pilon__uns 5296 4418 contig_7771_pilon__uns 55 142 contig_7773_pilon__uns 4822 4680 contig_7774_pilon__uns 2384 2473 contig_777_pilon__uns 211 175 contig_7780_pilon__uns 230 139 contig_7783_pilon__uns 1430 2502 contig_7784_pilon__uns 496 519 contig_7785_pilon__uns 33287 34287 contig_7792_pilon__uns 3425 2122 contig_7795_pilon__uns 384 406 contig_7801_pilon__uns 60 152 contig_7805_pilon__uns 130 124 contig_7814_pilon__uns 10356 8062 contig_7816_pilon__uns 4099 4518 contig_7818_pilon__uns 613 645 contig_7819_pilon__uns 3089 3259 contig_781_pilon__uns 1655 1763 contig_7822_pilon__uns 4993 9507 contig_7828_pilon__uns 146 294 contig_7829_pilon__uns 56094 56303 contig_782_pilon__uns 192 123 contig_7830_pilon__uns 25979 18107 contig_7836_pilon__uns 159 125 contig_783_pilon__uns 50602 46391 contig_7840_pilon__uns 730 1188 contig_7845_pilon__uns 1014 1145 contig_7846_pilon__uns 1588 2116 contig_7848_pilon__uns 125 115 contig_7849_pilon__uns 1031 1104 contig_7863_pilon__uns 1008 1165 contig_7866_pilon__uns 5359 5390 contig_7867_pilon__uns 17341 21326 contig_786_pilon__uns 458 635 contig_7871_pilon__uns 122 157 contig_7872_pilon__uns 3063 2170 contig_7873_pilon__uns 214 180 contig_7875_pilon__uns 651 882 contig_7879_pilon__uns 420 411 contig_787_pilon___frag_1__uns 3086 2100 contig_787_pilon___frag_2___debris__uns 648 546 contig_787_pilon___frag_3__uns 5701 4182 contig_787_pilon___frag_4___debris__uns 328 509 contig_787_pilon___frag_5__uns 9811 9255 contig_7880_pilon__uns 6556 7021 contig_7881_pilon__uns 10 119 contig_7884_pilon__uns 294 460 contig_7886_pilon__uns 1060 1240 contig_7890_pilon__uns 1836 1268 contig_7892_pilon__uns 12307 8707 contig_7893_pilon__uns 191 194 contig_7894_pilon__uns 16369 15451 contig_7899_pilon__uns 124 102 contig_7900_pilon__uns 670 900 contig_7906_pilon__uns 615 499 contig_7908_pilon__uns 2520 3323 contig_7917_pilon__uns 28 252 contig_791_pilon__uns 277 506 contig_7928_pilon__uns 4005 2957 contig_7931_pilon__uns 1725 1430 contig_7932_pilon__uns 179 103 contig_7935_pilon__uns 1647 929 contig_7938_pilon__uns 138 118 contig_7939_pilon__uns 806 1126 contig_793_pilon__uns 645 382 contig_7940_pilon__uns 128 195 contig_7947_pilon__uns 12336 14765 contig_7949_pilon__uns 166 37 contig_7952_pilon__uns 1491 1092 contig_7955_pilon__uns 494 561 contig_7957_pilon__uns 711 596 contig_7958_pilon__uns 223 167 contig_795_pilon__uns 599 669 contig_7963_pilon__uns 537 614 contig_7968_pilon__uns 2077 2124 contig_7969_pilon__uns 4152 1545 contig_7976_pilon__uns 480 511 contig_7977_pilon__uns 147 110 contig_7980_pilon__uns 469 692 contig_7981_pilon__uns 6150 6328 contig_7983_pilon__uns 2411 2634 contig_7984_pilon__uns 23987 38249 contig_798_pilon__uns 50070 47282 contig_7997_pilon__uns 151 144 contig_7999_pilon__uns 8344 9626 contig_79_pilon__uns 6174 14874 contig_8001_pilon__uns 124 310 contig_8002_pilon__uns 202 265 contig_8011_pilon__uns 54 169 contig_8012_pilon__uns 451 1123 contig_8013_pilon__uns 206 226 contig_8018_pilon__uns 142 116 contig_8020_pilon__uns 2024 1568 contig_8021_pilon__uns 1007 848 contig_8024_pilon__uns 200 52 contig_8025_pilon__uns 11090 13773 contig_8027_pilon__uns 20907 20137 contig_8028_pilon__uns 1257 797 contig_8033_pilon__uns 1219 905 contig_8034_pilon__uns 642 569 contig_8036_pilon__uns 170 258 contig_803_pilon__uns 41897 43475 contig_8041_pilon__uns 1006 1251 contig_8055_pilon__uns 267 175 contig_8057_pilon__uns 411 243 contig_8059_pilon__uns 169 89 contig_8065_pilon__uns 372 425 contig_8070_pilon__uns 8664 11208 contig_8071_pilon__uns 224 272 contig_8076_pilon__uns 2952 3121 contig_8089_pilon__uns 1117 1305 contig_8090_pilon__uns 112 226 contig_8093_pilon__uns 10309 10162 contig_8096_pilon__uns 1382 1821 contig_80_pilon__uns 10133 33840 contig_8100_pilon__uns 124 122 contig_8101_pilon__uns 8218 10457 contig_8103_pilon__uns 834 954 contig_8105_pilon__uns 29424 23945 contig_8106_pilon__uns 443 437 contig_8121_pilon__uns 32 216 contig_8129_pilon__uns 118 83 contig_8131_pilon__uns 1927 1626 contig_8140_pilon__uns 183 279 contig_8141_pilon__uns 125 113 contig_8145_pilon__uns 2493 3687 contig_8146_pilon__uns 131 220 contig_8148_pilon__uns 495 425 contig_8150_pilon__uns 137 161 contig_8153_pilon__uns 602 785 contig_8154_pilon__uns 12679 10930 contig_8157_pilon__uns 234 443 contig_8158_pilon__uns 1058 1109 contig_8162_pilon__uns 1854 1802 contig_8165_pilon__uns 407 649 contig_816_pilon__uns 39271 48347 contig_8170_pilon__uns 343 453 contig_8171_pilon__uns 310 273 contig_8172_pilon__uns 285 394 contig_8180_pilon__uns 196 358 contig_8182_pilon__uns 343 303 contig_8183_pilon__uns 1542 1856 contig_8186_pilon__uns 42 119 contig_8189_pilon__uns 1449 1250 contig_8192_pilon__uns 171 169 contig_8195_pilon__uns 644 584 contig_8198_pilon__uns 117 88 contig_8202_pilon__uns 2003 1166 contig_8204_pilon__uns 228 251 contig_8206_pilon__uns 1245 1481 contig_8207_pilon__uns 281 243 contig_8212_pilon__uns 2391 1792 contig_8213_pilon__uns 630 878 contig_8217_pilon__uns 181 180 contig_8219_pilon__uns 49 131 contig_8222_pilon__uns 101 106 contig_8223_pilon__uns 181 175 contig_8224_pilon__uns 10490 11329 contig_8225_pilon__uns 2470 2211 contig_8227_pilon__uns 246 160 contig_8228_pilon__uns 1377 1013 contig_8231_pilon__uns 182 78 contig_8232_pilon__uns 11569 12648 contig_8233_pilon__uns 1893 2524 contig_8242_pilon__uns 3055 3058 contig_8251_pilon__uns 303 338 contig_8252_pilon__uns 1023 764 contig_8253_pilon__uns 214 267 contig_8254_pilon___frag_2___debris__uns 297 171 contig_8257_pilon__uns 209 166 contig_8259_pilon__uns 1676 827 contig_8260_pilon__uns 451 241 contig_8261_pilon__uns 406 396 contig_8262_pilon__uns 10695 9893 contig_8268_pilon__uns 186 178 contig_8269_pilon__uns 315 265 contig_8272_pilon__uns 241 233 contig_8277_pilon__uns 101 117 contig_8278_pilon__uns 35 126 contig_8280_pilon__uns 203 72 contig_8286_pilon__uns 315 281 contig_8289_pilon__uns 153 231 contig_8296_pilon__uns 15393 15573 contig_8298_pilon__uns 332 278 contig_8299_pilon__uns 116 238 contig_8302_pilon__uns 173 171 contig_8303_pilon__uns 203 421 contig_8305_pilon__uns 252 299 contig_8306_pilon__uns 1593 1540 contig_830_pilon___frag_1__uns 14925 15174 contig_830_pilon___frag_2___debris__uns 403 430 contig_830_pilon___frag_3__uns 13641 15059 contig_8310_pilon___frag_1__uns 11537 12424 contig_8310_pilon___frag_2___debris__uns 893 977 contig_8310_pilon___frag_3__uns 11469 6090 contig_8316_pilon__uns 265 270 contig_8317_pilon__uns 450 29 contig_8318_pilon__uns 12978 14920 contig_8321_pilon__uns 783 533 contig_8323_pilon__uns 121 143 contig_8324_pilon__uns 2664 3404 contig_8327_pilon__uns 260 712 contig_8328_pilon__uns 692 593 contig_8347_pilon__uns 143 95 contig_834_pilon__uns 313 172 contig_8362_pilon__uns 21652 21136 contig_8363_pilon__uns 517 667 contig_8375_pilon__uns 60 261 contig_8381_pilon__uns 2801 2459 contig_8383_pilon__uns 933 814 contig_8388_pilon__uns 2750 2857 contig_8398_pilon__uns 2528 2500 contig_8400_pilon__uns 1252 540 contig_8405_pilon__uns 17415 16148 contig_8414_pilon__uns 5 166 contig_8417_pilon__uns 73 44 contig_8422_pilon__uns 5134 5445 contig_8434_pilon__uns 14710 17252 contig_8439_pilon__uns 744 728 contig_843_pilon__uns 9754 9206 contig_8450_pilon__uns 756 772 contig_8456_pilon__uns 547 344 contig_8462_pilon__uns 1391 1020 contig_846_pilon__uns 15606 18472 contig_8470_pilon__uns 19 261 contig_8471_pilon__uns 365 792 contig_847_pilon__uns 15523 16776 contig_8489_pilon__uns 3457 2751 contig_848_pilon__uns 15362 12899 contig_8491_pilon__uns 441 1092 contig_8492_pilon__uns 574 849 contig_8503_pilon__uns 8938 9382 contig_8509_pilon__uns 3456 3033 contig_850_pilon__uns 6095 6212 contig_8511_pilon__uns 690 351 contig_8514_pilon__uns 386 339 contig_851_pilon__uns 7906 8569 contig_8527_pilon__uns 460 601 contig_852_pilon___frag_1__uns 19498 13826 contig_852_pilon___frag_2___debris__uns 110 116 contig_852_pilon___frag_3__uns 8450 7742 contig_8530_pilon__uns 482 318 contig_8536_pilon__uns 223 5 contig_8543_pilon__uns 435 588 contig_8544_pilon__uns 5499 4556 contig_8546_pilon__uns 4397 3219 contig_8548_pilon__uns 83 84 contig_8549_pilon__uns 4792 4328 contig_8550_pilon__uns 9809 11965 contig_855_pilon__uns 3515 4103 contig_8560_pilon__uns 20461 18451 contig_8570_pilon__uns 2081 1515 contig_8577_pilon__uns 116 440 contig_8595_pilon__uns 763 898 contig_8598_pilon__uns 534 370 contig_85_pilon__uns 9678 10478 contig_8601_pilon__uns 183 99 contig_8606_pilon__uns 153 172 contig_8609_pilon__uns 753 699 contig_860_pilon__uns 599 103 contig_8610_pilon__uns 418 833 contig_8615_pilon__uns 59 183 contig_8616_pilon__uns 365 418 contig_8617_pilon__uns 13456 14228 contig_8618_pilon__uns 358 416 contig_861_pilon__uns 655 100 contig_8620_pilon__uns 138 237 contig_8621_pilon__uns 12052 13025 contig_8624_pilon__uns 908 1270 contig_8626_pilon__uns 1913 1737 contig_8628_pilon__uns 907 1092 contig_8629_pilon__uns 2163 1374 contig_8633_pilon__uns 806 853 contig_8634_pilon__uns 871 759 contig_8642_pilon__uns 222 92 contig_8647_pilon__uns 342 358 contig_8656_pilon__uns 484 691 contig_8658_pilon__uns 305 395 contig_865_pilon__uns 599 1142 contig_8661_pilon__uns 515 472 contig_8665_pilon__uns 24457 24059 contig_8669_pilon__uns 129 206 contig_8670_pilon__uns 995 798 contig_8671_pilon__uns 222 116 contig_8673_pilon__uns 495 788 contig_8675_pilon__uns 46 34 contig_8678_pilon__uns 136 207 contig_867_pilon__uns 465 355 contig_8688_pilon__uns 531 568 contig_8689_pilon__uns 3335 2133 contig_868_pilon__uns 385 107 contig_8697_pilon__uns 226 266 contig_86_pilon__uns 35053 34498 contig_8703_pilon__uns 515 513 contig_8712_pilon__uns 662 483 contig_8718_pilon__uns 881 859 contig_8733_pilon__uns 4745 5267 contig_8737_pilon__uns 104 103 contig_873_pilon__uns 7062 5661 contig_8746_pilon__uns 4998 5024 contig_8751_pilon__uns 655 559 contig_8754_pilon__uns 29 3071 contig_8761_pilon__uns 475 615 contig_8765_pilon__uns 2814 2507 contig_8769_pilon__uns 187 211 contig_8774_pilon__uns 295 35 contig_878_pilon__uns 861 945 contig_883_pilon__uns 2110 1995 contig_888_pilon__uns 560 617 contig_891_pilon__uns 18070 17125 contig_898_pilon___frag_1__uns 5130 4909 contig_898_pilon___frag_2___debris__uns 1081 1169 contig_899_pilon__uns 11767 8282 contig_902_pilon__uns 142 125 contig_909_pilon__uns 0 635 contig_913_pilon__uns 638 534 contig_917_pilon__uns 1325 1105 contig_91_pilon__uns 7039 7218 contig_928_pilon__uns 280 245 contig_932_pilon__uns 11006 11034 contig_933_pilon__uns 2298 2768 contig_941_pilon__uns 847 12397 contig_949_pilon__uns 3525 3273 contig_951_pilon__uns 13139 16125 contig_953_pilon__uns 15011 15418 contig_957_pilon___frag_2___debris__uns 467 652 contig_958_pilon__uns 10536 10756 contig_959_pilon__uns 2836 3518 contig_961_pilon___frag_1__uns 12549 11734 contig_961_pilon___frag_2___debris__uns 854 1436 contig_961_pilon___frag_3__uns 24409 25672 contig_961_pilon___frag_4___debris__uns 621 1281 contig_961_pilon___frag_5__uns 8127 9273 contig_967_pilon__uns 4779 7362 contig_969_pilon__uns 768 553 contig_970_pilon__uns 235 256 contig_973_pilon__uns 245 74 contig_975_pilon__uns 219 322 contig_980_pilon___frag_2___debris__uns 1397 1233 contig_988_pilon__uns 308 306 contig_989_pilon__uns 365 550 contig_991_pilon__uns 5679 4242 contig_992_pilon__uns 4510 3432 scaffold_11_pilon__uns 51166 58315 scaffold_4415_pilon__uns 29707 27435 scaffold_546_pilon___frag_2___debris__uns 480 317 scaffold_5852_pilon___frag_1__uns 7014 7188 scaffold_5852_pilon___frag_2___debris__uns 301 224 scaffold_5852_pilon___frag_3__uns 13213 13825 scaffold_6472_pilon__uns 17829 19651 scaffold_7122_pilon__uns 59988 53642 scaffold_75_pilon__uns 33363 31197 Total number of conversions performed: C->T: 147118698 G->A: 146965715 Step II - Genome bisulfite conversions - completed Bismark Genome Preparation - Step III: Launching the Bowtie 2 indexer Please be aware that this process can - depending on genome size - take several hours! Preparing indexing of CT converted genome in /gscratch/srlab/sr320/data/dumoar/sc-con-genome/Bisulfite_Genome/CT_conversion/ Parent process: Starting to index C->T converted genome with the following command: /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/bowtie2-build -f genome_mfa.CT_conversion.fa BS_CT --threads 28 Settings: Output files: "BS_CT.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 112 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: genome_mfa.CT_conversion.fa Building a SMALL index Reading reference sizes Preparing indexing of GA converted genome in /gscratch/srlab/sr320/data/dumoar/sc-con-genome/Bisulfite_Genome/GA_conversion/ Child process: Starting to index G->A converted genome with the following command: /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/bowtie2-build -f genome_mfa.GA_conversion.fa BS_GA --threads 28 Settings: Output files: "BS_GA.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 112 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: genome_mfa.GA_conversion.fa Building a SMALL index Reading reference sizes Time reading reference sizes: 00:00:05 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time reading reference sizes: 00:00:05 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:04 bmax according to bmaxDivN setting: 6516344 Using parameters --bmax 4887258 --dcv 1024 Doing ahead-of-time memory usage test Time to join reference sequences: 00:00:03 bmax according to bmaxDivN setting: 6516344 Using parameters --bmax 4887258 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 4887258 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples Passed! Constructing with these parameters: --bmax 4887258 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:06 Allocating rank array Ranking v-sort output V-Sorting samples time: 00:00:07 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:04 Invoking Larsson-Sadakane on ranks Ranking v-sort output time: 00:00:05 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:06 Sanity-checking and returning Building samples Reserving space for 300 sample suffixes Generating random suffixes QSorting 300 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 300 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Invoking Larsson-Sadakane on ranks time: 00:00:06 Sanity-checking and returning Building samples Reserving space for 300 sample suffixes Generating random suffixes QSorting 300 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 300 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Split 42, merged 137; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 41, merged 135; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 23, merged 14; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 23, merged 24; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 15, merged 20; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 11, merged 17; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 10, merged 9; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 3, merged 9; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 5, merged 7; iterating... Avg bucket size: 3.49201e+06 (target: 4887257) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 12 of 209 Getting block 2 of 209 Getting block 4 of 209 Getting block 5 of 209 Getting block 7 of 209 Getting block 9 of 209 Getting block 10 of 209 Getting block 11 of 209 Getting block 6 of 209 Getting block 3 of 209 Getting block 1 of 209 Reserving size (4887258) for bucket 12 Reserving size (4887258) for bucket 2 Reserving size (4887258) for bucket 4 Getting block 13 of 209 Getting block 14 of 209 Getting block 15 of 209 Getting block 16 of 209 Reserving size (4887258) for bucket 5 Reserving size (4887258) for bucket 7 Reserving size (4887258) for bucket 9 Reserving size (4887258) for bucket 10 Reserving size (4887258) for bucket 11 Getting block 17 of 209 Getting block 18 of 209 Getting block 19 of 209 Getting block 20 of 209 Getting block 21 of 209 Reserving size (4887258) for bucket 6 Getting block 22 of 209 Getting block 23 of 209 Getting block 24 of 209 Reserving size (4887258) for bucket 3 Reserving size (4887258) for bucket 1 Getting block 25 of 209 Getting block 8 of 209 Calculating Z arrays for bucket 4 Calculating Z arrays for bucket 12 Calculating Z arrays for bucket 2 Reserving size (4887258) for bucket 13 Reserving size (4887258) for bucket 14 Reserving size (4887258) for bucket 15 Reserving size (4887258) for bucket 16 Calculating Z arrays for bucket 5 Calculating Z arrays for bucket 7 Calculating Z arrays for bucket 9 Calculating Z arrays for bucket 10 Calculating Z arrays for bucket 11 Reserving size (4887258) for bucket 17 Reserving size (4887258) for bucket 18 Reserving size (4887258) for bucket 19 Reserving size (4887258) for bucket 20 Reserving size (4887258) for bucket 21 Calculating Z arrays for bucket 6 Reserving size (4887258) for bucket 22 Reserving size (4887258) for bucket 23 Reserving size (4887258) for bucket 24 Calculating Z arrays for bucket 3 Calculating Z arrays for bucket 1 Reserving size (4887258) for bucket 25 Getting block 26 of 209 Reserving size (4887258) for bucket 8 Getting block 27 of 209 Entering block accumulator loop for bucket 4: Entering block accumulator loop for bucket 12: Entering block accumulator loop for bucket 2: Calculating Z arrays for bucket 13 Calculating Z arrays for bucket 14 Calculating Z arrays for bucket 15 Calculating Z arrays for bucket 16 Entering block accumulator loop for bucket 5: Entering block accumulator loop for bucket 7: Entering block accumulator loop for bucket 10: Entering block accumulator loop for bucket 9: Calculating Z arrays for bucket 17 Calculating Z arrays for bucket 18 Calculating Z arrays for bucket 19 Calculating Z arrays for bucket 22 Entering block accumulator loop for bucket 11: Calculating Z arrays for bucket 20 Calculating Z arrays for bucket 24 Calculating Z arrays for bucket 21 Calculating Z arrays for bucket 23 Entering block accumulator loop for bucket 6: Calculating Z arrays for bucket 25 Entering block accumulator loop for bucket 1: Entering block accumulator loop for bucket 3: Reserving size (4887258) for bucket 26 Calculating Z arrays for bucket 8 Reserving size (4887258) for bucket 27 Entering block accumulator loop for bucket 14: Entering block accumulator loop for bucket 13: Entering block accumulator loop for bucket 15: Entering block accumulator loop for bucket 16: Entering block accumulator loop for bucket 17: Entering block accumulator loop for bucket 18: Entering block accumulator loop for bucket 19: Entering block accumulator loop for bucket 22: Entering block accumulator loop for bucket 20: Entering block accumulator loop for bucket 24: Entering block accumulator loop for bucket 21: Entering block accumulator loop for bucket 23: Entering block accumulator loop for bucket 25: Calculating Z arrays for bucket 26 Calculating Z arrays for bucket 27 Entering block accumulator loop for bucket 8: Entering block accumulator loop for bucket 26: Entering block accumulator loop for bucket 27: bucket 3: 10% bucket 19: 10% bucket 5: 10% Splitting and merging Splitting and merging time: 00:00:00 Split 3, merged 1; iterating... Avg bucket size: 3.72362e+06 (target: 4887257) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 196 Reserving size (4887258) for bucket 1 Getting block 2 of 196 Getting block 3 of 196 Getting block 4 of 196 Getting block 5 of 196 Getting block 6 of 196 Getting block 7 of 196 Getting block 8 of 196 Getting block 9 of 196 Getting block 10 of 196 Getting block 11 of 196 Getting block 12 of 196 Getting block 13 of 196 Getting block 14 of 196 Getting block 15 of 196 Getting block 16 of 196 Getting block 17 of 196 Getting block 18 of 196 Getting block 19 of 196 Getting block 20 of 196 Getting block 21 of 196 Getting block 22 of 196 Calculating Z arrays for bucket 1 Reserving size (4887258) for bucket 2 Reserving size (4887258) for bucket 3 Reserving size (4887258) for bucket 4 Reserving size (4887258) for bucket 5 Reserving size (4887258) for bucket 6 Reserving size (4887258) for bucket 7 Reserving size (4887258) for bucket 8 Reserving size (4887258) for bucket 9 Getting block 23 of 196 Reserving size (4887258) for bucket 10 Getting block 24 of 196 Reserving size (4887258) for bucket 11 Reserving size (4887258) for bucket 12 Reserving size (4887258) for bucket 13 Reserving size (4887258) for bucket 14 Reserving size (4887258) for bucket 15 Reserving size (4887258) for bucket 16 Reserving size (4887258) for bucket 17 Reserving size (4887258) for bucket 18 Reserving size (4887258) for bucket 19 Reserving size (4887258) for bucket 20 Reserving size (4887258) for bucket 21 Reserving size (4887258) for bucket 22 Getting block 25 of 196 Entering block accumulator loop for bucket 1: Calculating Z arrays for bucket 2 Calculating Z arrays for bucket 4 Calculating Z arrays for bucket 5 Calculating Z arrays for bucket 3 Calculating Z arrays for bucket 6 Calculating Z arrays for bucket 7 Calculating Z arrays for bucket 8 Calculating Z arrays for bucket 9 Reserving size (4887258) for bucket 23 Calculating Z arrays for bucket 10 Reserving size (4887258) for bucket 24 Calculating Z arrays for bucket 11 Calculating Z arrays for bucket 12 Calculating Z arrays for bucket 14 Calculating Z arrays for bucket 13 Calculating Z arrays for bucket 15 Calculating Z arrays for bucket 18 Calculating Z arrays for bucket 17 Calculating Z arrays for bucket 16 Calculating Z arrays for bucket 20 Calculating Z arrays for bucket 19 Calculating Z arrays for bucket 22 Reserving size (4887258) for bucket 25 Calculating Z arrays for bucket 21 Entering block accumulator loop for bucket 2: Entering block accumulator loop for bucket 4: Entering block accumulator loop for bucket 5: Entering block accumulator loop for bucket 3: Getting block 26 of 196 Entering block accumulator loop for bucket 6: Entering block accumulator loop for bucket 7: Entering block accumulator loop for bucket 8: Calculating Z arrays for bucket 23 Entering block accumulator loop for bucket 9: Calculating Z arrays for bucket 24 Entering block accumulator loop for bucket 10: Entering block accumulator loop for bucket 11: Entering block accumulator loop for bucket 12: Entering block accumulator loop for bucket 14: Entering block accumulator loop for bucket 13: Entering block accumulator loop for bucket 15: Entering block accumulator loop for bucket 18: Entering block accumulator loop for bucket 17: Entering block accumulator loop for bucket 16: Entering block accumulator loop for bucket 20: Entering block accumulator loop for bucket 19: Calculating Z arrays for bucket 25 Entering block accumulator loop for bucket 22: Entering block accumulator loop for bucket 21: Reserving size (4887258) for bucket 26 Entering block accumulator loop for bucket 23: Entering block accumulator loop for bucket 24: bucket 7: 10% bucket 17: 10% Entering block accumulator loop for bucket 25: Calculating Z arrays for bucket 26 Entering block accumulator loop for bucket 26: Getting block 27 of 196 Reserving size (4887258) for bucket 27 Calculating Z arrays for bucket 27 Entering block accumulator loop for bucket 27: bucket 18: 10% bucket 27: 10% bucket 11: 10% bucket 23: 10% bucket 1: 10% bucket 12: 10% bucket 9: 10% bucket 4: 10% bucket 10: 10% bucket 26: 10% bucket 15: 10% bucket 25: 10% bucket 14: 10% bucket 16: 10% bucket 8: 10% bucket 6: 10% bucket 2: 10% bucket 13: 10% bucket 22: 10% bucket 20: 10% bucket 21: 10% bucket 24: 10% bucket 1: 10% bucket 20: 10% bucket 3: 20% bucket 5: 20% bucket 6: 20% bucket 7: 20% bucket 18: 20% bucket 3: 10% bucket 4: 10% bucket 5: 10% bucket 8: 10% bucket 17: 20% bucket 2: 10% bucket 10: 10% bucket 9: 20% bucket 23: 20% bucket 14: 10% bucket 21: 10% bucket 9: 10% bucket 6: 10% bucket 12: 10% bucket 11: 10% bucket 13: 10% bucket 15: 10% bucket 18: 10% bucket 1: 20% bucket 19: 20% bucket 12: 20% bucket 23: 10% bucket 17: 10% bucket 24: 10% bucket 4: 20% bucket 25: 10% bucket 27: 10% bucket 26: 10% bucket 20: 20% bucket 26: 20% bucket 22: 10% bucket 11: 20% bucket 1: 20% bucket 7: 10% bucket 16: 10% bucket 27: 20% bucket 2: 20% bucket 10: 20% bucket 19: 10% bucket 14: 20% bucket 8: 20% bucket 25: 20% bucket 13: 20% bucket 16: 20% bucket 15: 20% bucket 20: 20% bucket 10: 20% bucket 22: 20% bucket 7: 30% bucket 21: 20% bucket 9: 30% bucket 6: 30% bucket 11: 20% bucket 3: 30% bucket 20: 30% bucket 24: 20% bucket 3: 20% bucket 4: 20% bucket 5: 20% bucket 5: 30% bucket 8: 20% bucket 2: 20% bucket 21: 20% bucket 9: 20% bucket 17: 30% bucket 18: 30% bucket 14: 20% bucket 1: 30% bucket 12: 20% bucket 13: 20% bucket 10: 30% bucket 15: 20% bucket 23: 30% bucket 1: 30% bucket 4: 30% bucket 6: 20% bucket 24: 20% bucket 17: 20% bucket 18: 20% bucket 12: 30% bucket 19: 20% bucket 23: 20% bucket 25: 30% bucket 7: 20% bucket 19: 30% bucket 25: 20% bucket 26: 20% bucket 11: 30% bucket 7: 40% bucket 27: 20% bucket 20: 40% bucket 2: 30% bucket 26: 30% bucket 11: 30% bucket 14: 30% bucket 22: 20% bucket 16: 20% bucket 10: 30% bucket 8: 30% bucket 16: 30% bucket 27: 30% bucket 13: 30% bucket 21: 30% bucket 15: 30% bucket 20: 30% bucket 22: 30% bucket 3: 30% bucket 3: 40% bucket 6: 40% bucket 9: 40% bucket 24: 30% bucket 4: 30% bucket 5: 30% bucket 10: 40% bucket 8: 30% bucket 6: 30% bucket 1: 40% bucket 5: 40% bucket 9: 30% bucket 15: 30% bucket 2: 30% bucket 17: 40% bucket 25: 40% bucket 21: 30% bucket 14: 30% bucket 13: 30% bucket 24: 30% bucket 23: 30% bucket 12: 30% bucket 1: 40% bucket 4: 40% bucket 2: 40% bucket 7: 30% bucket 18: 40% bucket 18: 30% bucket 26: 40% bucket 19: 30% bucket 12: 40% bucket 17: 30% bucket 7: 50% bucket 23: 40% bucket 20: 50% bucket 11: 40% bucket 25: 30% bucket 19: 40% bucket 26: 30% bucket 27: 30% bucket 22: 30% bucket 20: 40% bucket 11: 40% bucket 14: 40% bucket 21: 40% bucket 6: 50% bucket 8: 40% bucket 10: 40% bucket 16: 30% bucket 15: 40% bucket 3: 40% bucket 5: 40% bucket 4: 40% bucket 16: 40% bucket 10: 50% bucket 3: 50% bucket 17: 50% bucket 27: 40% bucket 1: 50% bucket 13: 40% bucket 9: 50% bucket 8: 40% bucket 15: 40% bucket 24: 40% bucket 22: 40% bucket 4: 50% bucket 7: 40% bucket 6: 40% bucket 9: 40% bucket 2: 40% bucket 5: 50% bucket 6: 60% bucket 14: 40% bucket 26: 50% bucket 13: 40% bucket 21: 40% bucket 25: 50% bucket 2: 50% bucket 1: 50% bucket 3: 50% bucket 10: 60% bucket 23: 40% bucket 12: 40% bucket 22: 40% bucket 7: 60% bucket 18: 40% bucket 27: 40% bucket 19: 40% bucket 24: 40% bucket 12: 50% bucket 20: 60% bucket 4: 50% bucket 9: 60% bucket 11: 50% bucket 17: 40% bucket 18: 50% bucket 26: 40% bucket 23: 50% bucket 11: 50% bucket 25: 40% bucket 7: 50% bucket 19: 50% bucket 1: 60% bucket 5: 50% bucket 20: 50% bucket 15: 50% bucket 8: 50% bucket 14: 50% bucket 10: 50% bucket 21: 50% bucket 16: 40% bucket 10: 70% bucket 3: 60% bucket 8: 50% bucket 24: 50% bucket 17: 60% bucket 4: 60% bucket 16: 50% bucket 13: 50% bucket 9: 50% bucket 15: 50% bucket 6: 50% bucket 22: 50% bucket 2: 50% bucket 5: 60% bucket 6: 70% bucket 25: 50% bucket 3: 60% bucket 13: 50% bucket 27: 50% bucket 14: 50% bucket 2: 60% bucket 21: 50% bucket 7: 60% bucket 26: 60% bucket 1: 60% bucket 12: 50% bucket 22: 50% bucket 25: 60% bucket 21: 60% bucket 23: 50% bucket 4: 60% bucket 24: 60% bucket 27: 50% bucket 7: 70% bucket 1: 70% bucket 26: 50% bucket 18: 50% bucket 9: 70% bucket 11: 60% bucket 20: 70% bucket 3: 70% bucket 12: 60% bucket 17: 50% bucket 19: 50% bucket 11: 60% bucket 5: 60% bucket 6: 80% bucket 24: 50% bucket 15: 60% bucket 10: 80% bucket 23: 60% bucket 20: 60% bucket 18: 60% bucket 14: 60% bucket 10: 60% bucket 8: 60% bucket 19: 60% bucket 8: 60% bucket 4: 70% bucket 7: 70% bucket 16: 50% bucket 24: 70% bucket 2: 60% bucket 17: 70% bucket 16: 60% bucket 9: 60% bucket 13: 60% bucket 3: 70% bucket 6: 60% bucket 5: 70% bucket 3: 80% bucket 13: 60% bucket 22: 60% bucket 14: 60% bucket 9: 80% bucket 15: 60% bucket 25: 60% bucket 2: 70% bucket 25: 70% bucket 4: 70% bucket 27: 60% bucket 1: 80% bucket 1: 70% bucket 21: 60% bucket 15: 70% bucket 7: 80% bucket 12: 60% bucket 22: 60% bucket 6: 90% bucket 26: 70% bucket 23: 60% bucket 21: 70% bucket 11: 70% bucket 5: 70% bucket 27: 60% bucket 20: 80% bucket 18: 60% bucket 26: 60% bucket 17: 80% bucket 10: 90% bucket 11: 70% bucket 12: 70% bucket 19: 60% bucket 24: 80% bucket 17: 60% bucket 13: 70% bucket 24: 60% bucket 20: 70% bucket 10: 70% bucket 14: 70% bucket 7: 80% bucket 25: 70% bucket 8: 70% bucket 23: 70% bucket 4: 80% bucket 18: 70% bucket 19: 70% bucket 2: 70% bucket 3: 80% bucket 8: 70% bucket 9: 70% bucket 1: 90% bucket 16: 60% bucket 16: 70% bucket 13: 70% bucket 3: 90% bucket 6: 70% bucket 5: 80% bucket 6: 100% Sorting block of length 4655339 for bucket 6 (Using difference cover) bucket 14: 70% bucket 9: 90% bucket 4: 80% bucket 25: 80% bucket 2: 80% bucket 7: 90% bucket 15: 80% bucket 22: 70% bucket 1: 80% bucket 22: 70% bucket 17: 90% bucket 15: 70% bucket 12: 70% bucket 1: 100% Sorting block of length 3318565 for bucket 1 (Using difference cover) bucket 5: 80% bucket 21: 70% bucket 24: 90% bucket 11: 80% bucket 23: 70% bucket 27: 70% bucket 10: 100% Sorting block of length 3867216 for bucket 10 (Using difference cover) bucket 20: 90% bucket 26: 80% bucket 21: 80% bucket 26: 70% bucket 18: 70% bucket 27: 70% bucket 19: 70% bucket 17: 70% bucket 11: 80% bucket 7: 90% bucket 13: 80% bucket 2: 80% bucket 3: 90% bucket 12: 80% bucket 10: 80% bucket 17: 100% Sorting block of length 2049310 for bucket 17 (Using difference cover) bucket 4: 90% bucket 8: 80% bucket 20: 80% bucket 2: 90% bucket 25: 80% bucket 14: 80% bucket 9: 80% bucket 24: 70% bucket 8: 80% bucket 19: 80% bucket 23: 80% bucket 18: 80% bucket 4: 90% bucket 3: 100% Sorting block of length 108741 for bucket 3 (Using difference cover) bucket 16: 70% bucket 6: 80% bucket 16: 80% bucket 5: 90% bucket 13: 80% Sorting block time: 00:00:00 Returning block of 108742 for bucket 3 bucket 14: 80% Getting block 28 of 209 Reserving size (4887258) for bucket 28 Calculating Z arrays for bucket 28 Entering block accumulator loop for bucket 28: bucket 9: 100% Sorting block of length 3969725 for bucket 9 (Using difference cover) bucket 21: 80% bucket 7: 100% Sorting block of length 4326622 for bucket 7 (Using difference cover) bucket 25: 90% bucket 1: 90% bucket 15: 90% bucket 5: 90% bucket 23: 80% bucket 12: 80% bucket 26: 90% bucket 26: 80% bucket 22: 80% bucket 11: 90% bucket 13: 90% bucket 24: 100% Sorting block of length 2021645 for bucket 24 (Using difference cover) bucket 22: 80% bucket 20: 100% Sorting block of length 3991036 for bucket 20 (Using difference cover) bucket 3: 100% Sorting block of length 4376638 for bucket 3 (Using difference cover) bucket 15: 80% bucket 7: 100% Sorting block of length 3883502 for bucket 7 (Using difference cover) bucket 2: 100% Sorting block of length 6236060 for bucket 2 (Using difference cover) bucket 18: 80% bucket 19: 80% bucket 21: 90% bucket 27: 80% bucket 27: 80% bucket 2: 90% bucket 8: 90% bucket 4: 100% Sorting block of length 1413430 for bucket 4 (Using difference cover) bucket 9: 90% bucket 25: 100% Sorting block of length 1920196 for bucket 25 (Using difference cover) bucket 11: 90% bucket 17: 80% bucket 4: 100% Sorting block of length 4144537 for bucket 4 (Using difference cover) bucket 12: 90% bucket 10: 90% bucket 8: 90% bucket 14: 90% bucket 6: 90% bucket 20: 90% bucket 25: 90% bucket 11: 100% Sorting block of length 3848349 for bucket 11 (Using difference cover) Sorting block time: 00:00:02 Returning block of 3318566 for bucket 1 bucket 18: 90% bucket 19: 90% bucket 5: 100% Sorting block of length 4119058 for bucket 5 (Using difference cover) bucket 21: 90% bucket 24: 80% bucket 23: 90% bucket 16: 80% bucket 14: 90% Getting block 28 of 196 Reserving size (4887258) for bucket 28 Calculating Z arrays for bucket 28 Entering block accumulator loop for bucket 28: bucket 28: 10% bucket 13: 90% bucket 16: 90% bucket 5: 100% Sorting block of length 3257714 for bucket 5 (Using difference cover) bucket 1: 100% Sorting block of length 543368 for bucket 1 (Using difference cover) bucket 12: 90% bucket 15: 100% Sorting block of length 4857548 for bucket 15 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2049311 for bucket 17 bucket 23: 90% bucket 26: 90% Getting block 29 of 209 Reserving size (4887258) for bucket 29 Calculating Z arrays for bucket 29 Entering block accumulator loop for bucket 29: bucket 26: 100% Sorting block of length 4591168 for bucket 26 (Using difference cover) Sorting block time: 00:00:02 Returning block of 3867217 for bucket 10 bucket 13: 100% Sorting block of length 4338235 for bucket 13 (Using difference cover) bucket 2: 100% Sorting block of length 4281832 for bucket 2 (Using difference cover) Getting block 29 of 196 Reserving size (4887258) for bucket 29 Calculating Z arrays for bucket 29 Entering block accumulator loop for bucket 29: bucket 22: 90% bucket 22: 90% bucket 16: 90% bucket 18: 90% bucket 8: 100% Sorting block of length 3273063 for bucket 8 (Using difference cover) bucket 19: 90% bucket 15: 90% bucket 27: 90% bucket 9: 100% Sorting block of length 3456002 for bucket 9 (Using difference cover) bucket 21: 100% Sorting block of length 2831212 for bucket 21 (Using difference cover) bucket 27: 90% bucket 6: 100% Sorting block of length 4659096 for bucket 6 (Using difference cover) bucket 11: 100% Sorting block of length 4864144 for bucket 11 (Using difference cover) bucket 17: 90% Sorting block time: 00:00:02 Returning block of 2021646 for bucket 24 bucket 10: 100% Sorting block of length 4452855 for bucket 10 (Using difference cover) bucket 12: 100% Sorting block of length 4433736 for bucket 12 (Using difference cover) bucket 14: 100% Sorting block of length 2267152 for bucket 14 (Using difference cover) bucket 25: 100% Sorting block of length 4027451 for bucket 25 (Using difference cover) Getting block 30 of 196 Reserving size (4887258) for bucket 30 Calculating Z arrays for bucket 30 Entering block accumulator loop for bucket 30: Sorting block time: 00:00:02 Returning block of 3969726 for bucket 9 bucket 23: 100% Sorting block of length 4536760 for bucket 23 (Using difference cover) bucket 18: 100% Sorting block of length 2935486 for bucket 18 (Using difference cover) bucket 20: 100% Sorting block of length 3279973 for bucket 20 (Using difference cover) bucket 14: 100% Sorting block of length 3384160 for bucket 14 (Using difference cover) bucket 19: 100% Sorting block of length 3504390 for bucket 19 (Using difference cover) bucket 28: 20% bucket 21: 100% Sorting block of length 4671628 for bucket 21 (Using difference cover) Getting block 30 of 209 Reserving size (4887258) for bucket 30 Calculating Z arrays for bucket 30 Entering block accumulator loop for bucket 30: bucket 8: 100% Sorting block of length 3809253 for bucket 8 (Using difference cover) bucket 23: 100% Sorting block of length 2885100 for bucket 23 (Using difference cover) Sorting block time: 00:00:01 Returning block of 1920197 for bucket 25 bucket 13: 100% Sorting block of length 4628569 for bucket 13 (Using difference cover) bucket 12: 100% Sorting block of length 3055727 for bucket 12 (Using difference cover) bucket 16: 100% Sorting block of length 4773363 for bucket 16 (Using difference cover) bucket 24: 90% Sorting block time: 00:00:04 Returning block of 4655340 for bucket 6 Getting block 31 of 209 Reserving size (4887258) for bucket 31 Calculating Z arrays for bucket 31 Entering block accumulator loop for bucket 31: bucket 28: 10% bucket 16: 100% Sorting block of length 4865971 for bucket 16 (Using difference cover) Getting block 32 of 209 Reserving size (4887258) for bucket 32 Calculating Z arrays for bucket 32 Entering block accumulator loop for bucket 32: Sorting block time: 00:00:02 Returning block of 1413431 for bucket 4 bucket 26: 100% Sorting block of length 4147594 for bucket 26 (Using difference cover) Getting block 33 of 209 Reserving size (4887258) for bucket 33 Calculating Z arrays for bucket 33 Entering block accumulator loop for bucket 33: bucket 29: 10% bucket 18: 100% Sorting block of length 4171418 for bucket 18 (Using difference cover) bucket 19: 100% Sorting block of length 4194801 for bucket 19 (Using difference cover) bucket 29: 10% bucket 22: 100% Sorting block of length 4247869 for bucket 22 (Using difference cover) bucket 27: 100% Sorting block of length 4557824 for bucket 27 (Using difference cover) bucket 22: 100% Sorting block of length 4834729 for bucket 22 (Using difference cover) bucket 15: 100% Sorting block of length 3068222 for bucket 15 (Using difference cover) Sorting block time: 00:00:03 Returning block of 4326623 for bucket 7 bucket 17: 100% Sorting block of length 4812098 for bucket 17 (Using difference cover) bucket 28: 30% Getting block 34 of 209 Reserving size (4887258) for bucket 34 Calculating Z arrays for bucket 34 Entering block accumulator loop for bucket 34: bucket 32: 10% bucket 27: 100% Sorting block of length 1177977 for bucket 27 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3991037 for bucket 20 bucket 30: 10% bucket 30: 10% Getting block 31 of 196 Reserving size (4887258) for bucket 31 Calculating Z arrays for bucket 31 Entering block accumulator loop for bucket 31: Sorting block time: 00:00:04 Returning block of 4376639 for bucket 3 Sorting block time: 00:00:03 Returning block of 543369 for bucket 1 bucket 24: 100% Sorting block of length 4308948 for bucket 24 (Using difference cover) bucket 31: 10% Getting block 35 of 209 Reserving size (4887258) for bucket 35 Calculating Z arrays for bucket 35 Entering block accumulator loop for bucket 35: bucket 28: 20% Getting block 32 of 196 Reserving size (4887258) for bucket 32 Calculating Z arrays for bucket 32 Entering block accumulator loop for bucket 32: bucket 29: 20% Sorting block time: 00:00:02 Returning block of 2831213 for bucket 21 Getting block 36 of 209 Reserving size (4887258) for bucket 36 Calculating Z arrays for bucket 36 Entering block accumulator loop for bucket 36: Sorting block time: 00:00:04 Returning block of 3883503 for bucket 7 bucket 29: 20% bucket 33: 10% Sorting block time: 00:00:00 Returning block of 1177978 for bucket 27 Getting block 37 of 209 Reserving size (4887258) for bucket 37 Calculating Z arrays for bucket 37 Entering block accumulator loop for bucket 37: Getting block 33 of 196 Reserving size (4887258) for bucket 33 Calculating Z arrays for bucket 33 Entering block accumulator loop for bucket 33: Sorting block time: 00:00:03 Returning block of 3273064 for bucket 8 bucket 28: 40% Sorting block time: 00:00:04 Returning block of 3848350 for bucket 11 Getting block 34 of 196 Reserving size (4887258) for bucket 34 Calculating Z arrays for bucket 34 Entering block accumulator loop for bucket 34: bucket 29: 30% bucket 31: 20% Sorting block time: 00:00:04 Returning block of 3257715 for bucket 5 bucket 30: 20% Getting block 35 of 196 Reserving size (4887258) for bucket 35 Calculating Z arrays for bucket 35 Entering block accumulator loop for bucket 35: bucket 32: 10% bucket 32: 20% Sorting block time: 00:00:03 Returning block of 2267153 for bucket 14 Sorting block time: 00:00:04 Returning block of 4144538 for bucket 4 bucket 34: 10% Getting block 36 of 196 Reserving size (4887258) for bucket 36 Calculating Z arrays for bucket 36 Entering block accumulator loop for bucket 36: Getting block 38 of 209 Reserving size (4887258) for bucket 38 Calculating Z arrays for bucket 38 Entering block accumulator loop for bucket 38: Sorting block time: 00:00:03 Returning block of 4027452 for bucket 25 Getting block 37 of 196 Reserving size (4887258) for bucket 37 Calculating Z arrays for bucket 37 Entering block accumulator loop for bucket 37: bucket 30: 20% bucket 31: 10% Getting block 38 of 196 Reserving size (4887258) for bucket 38 Calculating Z arrays for bucket 38 Entering block accumulator loop for bucket 38: Sorting block time: 00:00:04 Returning block of 4591169 for bucket 26 Sorting block time: 00:00:03 Returning block of 3279974 for bucket 20 Sorting block time: 00:00:03 Returning block of 3809254 for bucket 8 bucket 28: 30% bucket 35: 10% Sorting block time: 00:00:03 Returning block of 2885101 for bucket 23 Getting block 39 of 209 Reserving size (4887258) for bucket 39 Calculating Z arrays for bucket 39 Entering block accumulator loop for bucket 39: Getting block 40 of 209 Reserving size (4887258) for bucket 40 Calculating Z arrays for bucket 40 Entering block accumulator loop for bucket 40: Sorting block time: 00:00:04 Returning block of 4536761 for bucket 23 Getting block 41 of 209 Reserving size (4887258) for bucket 41 Calculating Z arrays for bucket 41 Entering block accumulator loop for bucket 41: Sorting block time: 00:00:04 Returning block of 2935487 for bucket 18 Getting block 42 of 209 Reserving size (4887258) for bucket 42 Calculating Z arrays for bucket 42 Entering block accumulator loop for bucket 42: bucket 29: 30% Sorting block time: 00:00:04 Returning block of 3456003 for bucket 9 bucket 33: 20% Getting block 39 of 196 Reserving size (4887258) for bucket 39 Calculating Z arrays for bucket 39 Entering block accumulator loop for bucket 39: Getting block 43 of 209 Reserving size (4887258) for bucket 43 Calculating Z arrays for bucket 43 Entering block accumulator loop for bucket 43: Getting block 40 of 196 Reserving size (4887258) for bucket 40 Calculating Z arrays for bucket 40 Entering block accumulator loop for bucket 40: Sorting block time: 00:00:04 Returning block of 3384161 for bucket 14 bucket 36: 10% bucket 29: 40% bucket 33: 10% Getting block 41 of 196 Reserving size (4887258) for bucket 41 Calculating Z arrays for bucket 41 Entering block accumulator loop for bucket 41: bucket 30: 30% Sorting block time: 00:00:04 Returning block of 3055728 for bucket 12 bucket 37: 10% Sorting block time: 00:00:03 Returning block of 3068223 for bucket 15 Sorting block time: 00:00:05 Returning block of 4119059 for bucket 5 bucket 28: 50% Sorting block time: 00:00:04 Returning block of 4281833 for bucket 2 Getting block 42 of 196 Reserving size (4887258) for bucket 42 Calculating Z arrays for bucket 42 Entering block accumulator loop for bucket 42: bucket 32: 20% Sorting block time: 00:00:04 Returning block of 3504391 for bucket 19 bucket 31: 30% bucket 34: 10% Getting block 44 of 209 Reserving size (4887258) for bucket 44 Calculating Z arrays for bucket 44 Entering block accumulator loop for bucket 44: Sorting block time: 00:00:04 Returning block of 4338236 for bucket 13 bucket 35: 10% Sorting block time: 00:00:04 Returning block of 4671629 for bucket 21 Getting block 45 of 209 Reserving size (4887258) for bucket 45 Calculating Z arrays for bucket 45 Entering block accumulator loop for bucket 45: Getting block 43 of 196 Reserving size (4887258) for bucket 43 Calculating Z arrays for bucket 43 Entering block accumulator loop for bucket 43: Sorting block time: 00:00:05 Returning block of 4857549 for bucket 15 Getting block 46 of 209 Reserving size (4887258) for bucket 46 Calculating Z arrays for bucket 46 Entering block accumulator loop for bucket 46: Sorting block time: 00:00:04 Returning block of 4452856 for bucket 10 bucket 31: 20% bucket 36: 10% bucket 32: 30% Getting block 44 of 196 Reserving size (4887258) for bucket 44 Calculating Z arrays for bucket 44 Entering block accumulator loop for bucket 44: bucket 34: 20% bucket 38: 10% Getting block 45 of 196 Reserving size (4887258) for bucket 45 Calculating Z arrays for bucket 45 Entering block accumulator loop for bucket 45: bucket 37: 10% bucket 30: 30% Getting block 46 of 196 Reserving size (4887258) for bucket 46 Calculating Z arrays for bucket 46 Entering block accumulator loop for bucket 46: Getting block 47 of 209 Reserving size (4887258) for bucket 47 Calculating Z arrays for bucket 47 Entering block accumulator loop for bucket 47: bucket 28: 40% Sorting block time: 00:00:05 Returning block of 4864145 for bucket 11 bucket 38: 10% Sorting block time: 00:00:05 Returning block of 4659097 for bucket 6 Sorting block time: 00:00:04 Returning block of 4147595 for bucket 26 Sorting block time: 00:00:05 Returning block of 4433737 for bucket 12 bucket 33: 30% bucket 35: 20% Sorting block time: 00:00:05 Returning block of 4628570 for bucket 13 Sorting block time: 00:00:04 Returning block of 4194802 for bucket 19 Getting block 48 of 209 Reserving size (4887258) for bucket 48 Calculating Z arrays for bucket 48 Entering block accumulator loop for bucket 48: Getting block 47 of 196 Reserving size (4887258) for bucket 47 Calculating Z arrays for bucket 47 Entering block accumulator loop for bucket 47: bucket 39: 10% bucket 40: 10% Getting block 48 of 196 Reserving size (4887258) for bucket 48 Calculating Z arrays for bucket 48 Entering block accumulator loop for bucket 48: Sorting block time: 00:00:05 Returning block of 4773364 for bucket 16 Getting block 49 of 209 Reserving size (4887258) for bucket 49 Calculating Z arrays for bucket 49 Entering block accumulator loop for bucket 49: bucket 29: 50% bucket 29: 40% bucket 41: 10% Getting block 49 of 196 Reserving size (4887258) for bucket 49 Calculating Z arrays for bucket 49 Entering block accumulator loop for bucket 49: Sorting block time: 00:00:04 Returning block of 4834730 for bucket 22 bucket 42: 10% Sorting block time: 00:00:04 Returning block of 4247870 for bucket 22 bucket 39: 10% Getting block 50 of 209 Reserving size (4887258) for bucket 50 Calculating Z arrays for bucket 50 Entering block accumulator loop for bucket 50: Getting block 51 of 209 Reserving size (4887258) for bucket 51 Calculating Z arrays for bucket 51 Entering block accumulator loop for bucket 51: bucket 40: 10% Sorting block time: 00:00:04 Returning block of 4812099 for bucket 17 Getting block 50 of 196 Reserving size (4887258) for bucket 50 Calculating Z arrays for bucket 50 Entering block accumulator loop for bucket 50: bucket 43: 10% bucket 33: 20% bucket 31: 30% Getting block 52 of 209 Reserving size (4887258) for bucket 52 Calculating Z arrays for bucket 52 Entering block accumulator loop for bucket 52: bucket 36: 20% bucket 30: 40% Getting block 51 of 196 Reserving size (4887258) for bucket 51 Calculating Z arrays for bucket 51 Entering block accumulator loop for bucket 51: Sorting block time: 00:00:04 Returning block of 4308949 for bucket 24 bucket 41: 10% bucket 28: 60% Sorting block time: 00:00:05 Returning block of 4557825 for bucket 27 bucket 32: 30% bucket 37: 20% bucket 34: 20% Getting block 53 of 209 Reserving size (4887258) for bucket 53 Calculating Z arrays for bucket 53 Entering block accumulator loop for bucket 53: bucket 35: 20% bucket 31: 40% Getting block 52 of 196 Reserving size (4887258) for bucket 52 Calculating Z arrays for bucket 52 Entering block accumulator loop for bucket 52: Sorting block time: 00:00:05 Returning block of 4865972 for bucket 16 bucket 36: 20% bucket 44: 10% bucket 46: 10% bucket 45: 10% Sorting block time: 00:00:05 Returning block of 4171419 for bucket 18 bucket 43: 10% bucket 33: 40% bucket 30: 40% bucket 37: 20% bucket 34: 30% bucket 32: 40% bucket 42: 10% Getting block 53 of 196 Reserving size (4887258) for bucket 53 Calculating Z arrays for bucket 53 Entering block accumulator loop for bucket 53: bucket 38: 20% bucket 44: 10% bucket 45: 10% Getting block 54 of 196 Reserving size (4887258) for bucket 54 Calculating Z arrays for bucket 54 Entering block accumulator loop for bucket 54: bucket 47: 10% bucket 28: 50% bucket 46: 10% bucket 38: 20% bucket 35: 30% bucket 48: 10% bucket 29: 60% bucket 47: 10% Sorting block time: 00:00:09 Returning block of 6236061 for bucket 2 bucket 40: 20% bucket 39: 20% bucket 29: 50% bucket 49: 10% bucket 41: 20% bucket 39: 20% bucket 49: 10% bucket 36: 30% bucket 42: 20% Getting block 54 of 209 Reserving size (4887258) for bucket 54 Calculating Z arrays for bucket 54 Entering block accumulator loop for bucket 54: bucket 40: 20% bucket 33: 30% bucket 31: 40% bucket 51: 10% bucket 48: 10% bucket 50: 10% bucket 28: 70% bucket 43: 20% bucket 30: 50% bucket 50: 10% bucket 52: 10% bucket 32: 40% bucket 34: 30% bucket 35: 30% bucket 41: 20% bucket 31: 50% bucket 37: 30% bucket 36: 30% bucket 53: 10% bucket 51: 10% bucket 37: 30% bucket 30: 50% bucket 44: 20% bucket 46: 20% bucket 52: 10% bucket 33: 50% bucket 34: 40% bucket 43: 20% bucket 45: 20% bucket 38: 30% bucket 42: 20% bucket 28: 60% bucket 44: 20% bucket 32: 50% bucket 47: 20% bucket 45: 20% bucket 53: 10% bucket 46: 20% bucket 54: 10% bucket 38: 30% bucket 35: 40% bucket 29: 70% bucket 28: 80% bucket 29: 60% bucket 47: 20% bucket 39: 30% bucket 48: 20% bucket 40: 30% bucket 49: 20% bucket 39: 30% bucket 33: 40% bucket 41: 30% bucket 31: 50% bucket 49: 20% bucket 36: 40% bucket 40: 30% bucket 42: 30% bucket 48: 20% bucket 30: 60% bucket 54: 10% bucket 51: 20% bucket 35: 40% bucket 50: 20% bucket 34: 40% bucket 32: 50% bucket 43: 30% bucket 50: 20% bucket 36: 40% bucket 31: 60% bucket 52: 20% bucket 41: 30% bucket 37: 40% bucket 30: 60% bucket 37: 40% bucket 53: 20% bucket 33: 60% bucket 51: 20% bucket 46: 30% bucket 34: 50% bucket 44: 30% bucket 38: 40% bucket 28: 70% bucket 45: 30% bucket 52: 20% bucket 43: 30% bucket 45: 30% bucket 32: 60% bucket 42: 30% bucket 47: 30% bucket 44: 30% bucket 38: 40% bucket 53: 20% bucket 46: 30% bucket 35: 50% bucket 28: 90% bucket 29: 70% bucket 54: 20% bucket 33: 50% bucket 39: 40% bucket 47: 30% bucket 39: 40% bucket 40: 40% bucket 48: 30% bucket 49: 30% bucket 29: 80% bucket 31: 60% bucket 41: 40% bucket 40: 40% bucket 35: 50% bucket 36: 50% bucket 34: 50% bucket 49: 30% bucket 30: 70% bucket 32: 60% bucket 48: 30% bucket 36: 50% bucket 42: 40% bucket 50: 30% bucket 45: 40% bucket 51: 30% bucket 43: 40% bucket 31: 70% bucket 50: 30% bucket 30: 70% bucket 54: 20% bucket 37: 50% bucket 41: 40% bucket 37: 50% bucket 52: 30% bucket 33: 70% bucket 34: 60% bucket 46: 40% bucket 28: 80% bucket 38: 50% bucket 38: 50% bucket 53: 30% bucket 44: 40% bucket 51: 30% bucket 43: 40% bucket 42: 40% bucket 47: 40% bucket 52: 30% bucket 45: 40% bucket 32: 70% bucket 44: 40% bucket 35: 60% bucket 46: 40% bucket 33: 60% bucket 39: 50% bucket 29: 80% bucket 28: 100% Sorting block of length 4599617 for bucket 28 (Using difference cover) bucket 53: 30% bucket 31: 70% bucket 47: 40% bucket 40: 50% bucket 35: 60% bucket 48: 40% bucket 49: 40% bucket 29: 90% bucket 39: 50% bucket 34: 60% bucket 54: 30% bucket 40: 50% bucket 41: 50% bucket 30: 80% bucket 36: 60% bucket 32: 70% bucket 36: 60% bucket 49: 40% bucket 48: 40% bucket 37: 60% bucket 42: 50% bucket 30: 80% bucket 31: 80% bucket 50: 40% bucket 51: 40% bucket 43: 50% bucket 38: 60% bucket 50: 40% bucket 37: 60% bucket 41: 50% bucket 45: 50% bucket 54: 30% bucket 33: 80% bucket 28: 90% bucket 52: 40% bucket 34: 70% bucket 38: 60% bucket 46: 50% bucket 43: 50% bucket 44: 50% bucket 39: 60% bucket 53: 40% bucket 47: 50% bucket 42: 50% bucket 31: 80% bucket 32: 80% bucket 51: 40% bucket 45: 50% bucket 52: 40% bucket 44: 50% bucket 33: 70% bucket 35: 70% bucket 29: 90% bucket 46: 50% bucket 35: 70% bucket 34: 70% bucket 47: 50% bucket 53: 40% bucket 40: 60% bucket 36: 70% bucket 29: 100% Sorting block of length 3627117 for bucket 29 (Using difference cover) bucket 49: 50% bucket 48: 50% bucket 32: 80% bucket 40: 60% bucket 30: 90% bucket 41: 60% bucket 36: 70% bucket 37: 70% bucket 49: 50% bucket 54: 40% bucket 30: 90% bucket 48: 50% bucket 39: 60% bucket 31: 90% bucket 38: 70% bucket 42: 60% bucket 50: 50% bucket 51: 50% bucket 43: 60% bucket 43: 60% bucket 37: 70% bucket 28: 100% Sorting block of length 2688614 for bucket 28 (Using difference cover) bucket 50: 50% bucket 41: 60% bucket 33: 90% bucket 45: 60% bucket 34: 80% bucket 38: 70% bucket 46: 60% bucket 52: 50% bucket 31: 90% bucket 44: 60% bucket 47: 60% bucket 39: 70% bucket 42: 60% bucket 32: 90% bucket 33: 80% bucket 53: 50% bucket 54: 40% bucket 45: 60% bucket 35: 80% bucket 52: 50% bucket 44: 60% bucket 51: 50% bucket 29: 100% Sorting block of length 2972895 for bucket 29 (Using difference cover) bucket 35: 80% bucket 34: 80% bucket 46: 60% bucket 36: 80% bucket 47: 60% bucket 32: 90% bucket 30: 100% Sorting block of length 4024158 for bucket 30 (Using difference cover) bucket 49: 60% bucket 40: 70% bucket 48: 60% bucket 40: 70% bucket 53: 50% bucket 30: 100% Sorting block of length 3689826 for bucket 30 (Using difference cover) bucket 37: 80% bucket 41: 70% bucket 31: 100% Sorting block of length 3012841 for bucket 31 (Using difference cover) bucket 36: 80% bucket 38: 80% bucket 48: 60% bucket 49: 60% bucket 50: 60% bucket 54: 50% bucket 39: 70% bucket 42: 70% bucket 43: 70% bucket 51: 60% bucket 43: 70% bucket 37: 80% bucket 50: 60% bucket 33: 100% Sorting block of length 3883405 for bucket 33 (Using difference cover) bucket 41: 70% bucket 31: 100% Sorting block of length 4812824 for bucket 31 (Using difference cover) bucket 34: 90% bucket 45: 70% bucket 38: 80% bucket 46: 70% Sorting block time: 00:00:04 Returning block of 4599618 for bucket 28 bucket 39: 80% bucket 32: 100% Sorting block of length 2228936 for bucket 32 (Using difference cover) bucket 52: 60% bucket 33: 90% bucket 47: 70% Getting block 55 of 209 Reserving size (4887258) for bucket 55 Calculating Z arrays for bucket 55 Entering block accumulator loop for bucket 55: bucket 44: 70% bucket 42: 70% bucket 35: 90% bucket 35: 90% bucket 45: 70% bucket 53: 60% bucket 54: 50% bucket 52: 60% bucket 44: 70% bucket 34: 90% bucket 36: 90% bucket 51: 60% bucket 32: 100% Sorting block of length 4730452 for bucket 32 (Using difference cover) bucket 46: 70% bucket 47: 70% bucket 49: 70% bucket 37: 90% bucket 40: 80% bucket 40: 80% bucket 48: 70% Sorting block time: 00:00:02 Returning block of 2688615 for bucket 28 bucket 38: 90% bucket 41: 80% bucket 53: 60% Getting block 55 of 196 Reserving size (4887258) for bucket 55 Calculating Z arrays for bucket 55 Entering block accumulator loop for bucket 55: bucket 36: 90% bucket 48: 70% bucket 49: 70% bucket 50: 70% bucket 39: 80% Sorting block time: 00:00:04 Returning block of 3627118 for bucket 29 bucket 43: 80% bucket 37: 90% bucket 42: 80% bucket 34: 100% Sorting block of length 3678352 for bucket 34 (Using difference cover) bucket 45: 80% bucket 38: 90% bucket 41: 80% bucket 51: 70% Getting block 56 of 209 Reserving size (4887258) for bucket 56 Calculating Z arrays for bucket 56 Entering block accumulator loop for bucket 56: bucket 50: 70% bucket 43: 80% bucket 33: 100% Sorting block of length 3642056 for bucket 33 (Using difference cover) bucket 53: 70% bucket 46: 80% bucket 54: 60% bucket 39: 90% bucket 47: 80% bucket 42: 80% bucket 35: 100% Sorting block of length 2830320 for bucket 35 (Using difference cover) bucket 44: 80% bucket 52: 70% Sorting block time: 00:00:03 Returning block of 2972896 for bucket 29 bucket 35: 100% Sorting block of length 4829952 for bucket 35 (Using difference cover) bucket 55: 10% bucket 34: 100% Sorting block of length 3902650 for bucket 34 (Using difference cover) bucket 36: 100% Sorting block of length 4264781 for bucket 36 (Using difference cover) Getting block 56 of 196 Reserving size (4887258) for bucket 56 Calculating Z arrays for bucket 56 Entering block accumulator loop for bucket 56: bucket 45: 80% bucket 52: 70% bucket 54: 60% bucket 44: 80% Sorting block time: 00:00:02 Returning block of 3012842 for bucket 31 bucket 38: 100% Sorting block of length 4085578 for bucket 38 (Using difference cover) bucket 37: 100% Sorting block of length 3589610 for bucket 37 (Using difference cover) Sorting block time: 00:00:03 Returning block of 2228937 for bucket 32 bucket 51: 70% bucket 46: 80% Getting block 57 of 209 Reserving size (4887258) for bucket 57 Calculating Z arrays for bucket 57 Entering block accumulator loop for bucket 57: Getting block 58 of 209 Reserving size (4887258) for bucket 58 Calculating Z arrays for bucket 58 Entering block accumulator loop for bucket 58: bucket 40: 90% bucket 47: 80% bucket 36: 100% Sorting block of length 3390273 for bucket 36 (Using difference cover) bucket 40: 90% bucket 49: 80% bucket 41: 90% Sorting block time: 00:00:03 Returning block of 3689827 for bucket 30 bucket 48: 80% bucket 49: 80% bucket 46: 90% bucket 39: 90% Getting block 57 of 196 Reserving size (4887258) for bucket 57 Calculating Z arrays for bucket 57 Entering block accumulator loop for bucket 57: bucket 45: 90% bucket 53: 70% bucket 43: 90% bucket 38: 100% Sorting block of length 2220749 for bucket 38 (Using difference cover) bucket 55: 10% bucket 48: 80% Sorting block time: 00:00:03 Returning block of 4024159 for bucket 30 bucket 53: 80% bucket 50: 80% bucket 39: 100% Sorting block of length 3811904 for bucket 39 (Using difference cover) bucket 41: 90% bucket 51: 80% bucket 43: 90% Getting block 59 of 209 Reserving size (4887258) for bucket 59 Calculating Z arrays for bucket 59 Entering block accumulator loop for bucket 59: bucket 56: 10% bucket 37: 100% Sorting block of length 4135548 for bucket 37 (Using difference cover) bucket 42: 90% bucket 50: 80% bucket 54: 70% bucket 55: 20% bucket 42: 90% Sorting block time: 00:00:04 Returning block of 4812825 for bucket 31 bucket 52: 80% bucket 47: 90% bucket 44: 90% bucket 45: 90% bucket 44: 90% bucket 52: 80% bucket 56: 10% bucket 41: 100% Sorting block of length 1747467 for bucket 41 (Using difference cover) Getting block 58 of 196 Reserving size (4887258) for bucket 58 Calculating Z arrays for bucket 58 Entering block accumulator loop for bucket 58: Sorting block time: 00:00:04 Returning block of 3883406 for bucket 33 bucket 51: 80% bucket 47: 90% bucket 40: 100% Sorting block of length 3788228 for bucket 40 (Using difference cover) bucket 57: 10% bucket 58: 10% bucket 40: 100% Sorting block of length 4383103 for bucket 40 (Using difference cover) bucket 54: 70% bucket 49: 90% Getting block 60 of 209 Reserving size (4887258) for bucket 60 Calculating Z arrays for bucket 60 Entering block accumulator loop for bucket 60: bucket 46: 90% bucket 57: 10% bucket 48: 90% bucket 39: 100% Sorting block of length 4857825 for bucket 39 (Using difference cover) bucket 49: 90% bucket 45: 100% Sorting block of length 3165601 for bucket 45 (Using difference cover) bucket 43: 100% Sorting block of length 3720133 for bucket 43 (Using difference cover) bucket 46: 100% Sorting block of length 149228 for bucket 46 (Using difference cover) bucket 52: 90% bucket 56: 20% bucket 43: 100% Sorting block of length 4762826 for bucket 43 (Using difference cover) Sorting block time: 00:00:03 Returning block of 4085579 for bucket 38 Sorting block time: 00:00:00 Returning block of 149229 for bucket 46 Getting block 61 of 209 Reserving size (4887258) for bucket 61 Calculating Z arrays for bucket 61 Entering block accumulator loop for bucket 61: bucket 41: 100% Sorting block of length 4452830 for bucket 41 (Using difference cover) bucket 48: 90% bucket 53: 90% bucket 50: 90% Getting block 59 of 196 Reserving size (4887258) for bucket 59 Calculating Z arrays for bucket 59 Entering block accumulator loop for bucket 59: bucket 59: 10% bucket 58: 10% bucket 53: 80% Sorting block time: 00:00:04 Returning block of 4730453 for bucket 32 bucket 55: 20% bucket 51: 90% bucket 47: 100% Sorting block of length 7647 for bucket 47 (Using difference cover) Sorting block time: 00:00:00 Returning block of 7648 for bucket 47 Getting block 62 of 209 Reserving size (4887258) for bucket 62 Calculating Z arrays for bucket 62 Entering block accumulator loop for bucket 62: bucket 42: 100% Sorting block of length 4724248 for bucket 42 (Using difference cover) bucket 50: 90% bucket 55: 30% bucket 42: 100% Sorting block of length 1587957 for bucket 42 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2220750 for bucket 38 Sorting block time: 00:00:03 Returning block of 3642057 for bucket 33 Getting block 60 of 196 Reserving size (4887258) for bucket 60 Calculating Z arrays for bucket 60 Entering block accumulator loop for bucket 60: Getting block 63 of 209 Reserving size (4887258) for bucket 63 Calculating Z arrays for bucket 63 Entering block accumulator loop for bucket 63: bucket 44: 100% Sorting block of length 2023367 for bucket 44 (Using difference cover) Getting block 61 of 196 Reserving size (4887258) for bucket 61 Calculating Z arrays for bucket 61 Entering block accumulator loop for bucket 61: Sorting block time: 00:00:04 Returning block of 3678353 for bucket 34 bucket 45: 100% Sorting block of length 5931641 for bucket 45 (Using difference cover) bucket 52: 90% bucket 56: 30% bucket 44: 100% Sorting block of length 4540614 for bucket 44 (Using difference cover) bucket 46: 100% Sorting block of length 2396265 for bucket 46 (Using difference cover) Getting block 64 of 209 Reserving size (4887258) for bucket 64 Calculating Z arrays for bucket 64 Entering block accumulator loop for bucket 64: bucket 54: 80% bucket 47: 100% Sorting block of length 3286372 for bucket 47 (Using difference cover) bucket 56: 20% bucket 49: 100% Sorting block of length 695892 for bucket 49 (Using difference cover) bucket 51: 90% Sorting block time: 00:00:02 Returning block of 1747468 for bucket 41 bucket 58: 20% bucket 57: 20% bucket 54: 80% Sorting block time: 00:00:03 Returning block of 3589611 for bucket 37 Getting block 65 of 209 Reserving size (4887258) for bucket 65 Calculating Z arrays for bucket 65 Entering block accumulator loop for bucket 65: bucket 60: 10% Sorting block time: 00:00:00 Returning block of 695893 for bucket 49 bucket 49: 100% Sorting block of length 4703837 for bucket 49 (Using difference cover) Getting block 66 of 209 Reserving size (4887258) for bucket 66 Calculating Z arrays for bucket 66 Entering block accumulator loop for bucket 66: Getting block 62 of 196 Reserving size (4887258) for bucket 62 Calculating Z arrays for bucket 62 Entering block accumulator loop for bucket 62: bucket 48: 100% Sorting block of length 5158514 for bucket 48 (Using difference cover) bucket 57: 20% bucket 52: 100% Sorting block of length 4666576 for bucket 52 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3902651 for bucket 34 bucket 59: 10% Getting block 63 of 196 Reserving size (4887258) for bucket 63 Calculating Z arrays for bucket 63 Entering block accumulator loop for bucket 63: Sorting block time: 00:00:05 Returning block of 4264782 for bucket 36 Sorting block time: 00:00:04 Returning block of 3390274 for bucket 36 bucket 56: 40% Sorting block time: 00:00:02 Returning block of 1587958 for bucket 42 bucket 53: 100% Sorting block of length 4870401 for bucket 53 (Using difference cover) Getting block 64 of 196 Reserving size (4887258) for bucket 64 Calculating Z arrays for bucket 64 Entering block accumulator loop for bucket 64: bucket 50: 100% Sorting block of length 2158353 for bucket 50 (Using difference cover) Getting block 67 of 209 Reserving size (4887258) for bucket 67 Calculating Z arrays for bucket 67 Entering block accumulator loop for bucket 67: Getting block 65 of 196 Reserving size (4887258) for bucket 65 Calculating Z arrays for bucket 65 Entering block accumulator loop for bucket 65: Sorting block time: 00:00:05 Returning block of 4829953 for bucket 35 bucket 48: 100% Sorting block of length 2285172 for bucket 48 (Using difference cover) bucket 59: 20% bucket 58: 20% bucket 61: 10% bucket 55: 30% Getting block 68 of 209 Reserving size (4887258) for bucket 68 Calculating Z arrays for bucket 68 Entering block accumulator loop for bucket 68: Sorting block time: 00:00:03 Returning block of 4135549 for bucket 37 bucket 60: 10% bucket 55: 40% bucket 53: 90% bucket 51: 100% Sorting block of length 4607547 for bucket 51 (Using difference cover) Getting block 69 of 209 Reserving size (4887258) for bucket 69 Calculating Z arrays for bucket 69 Entering block accumulator loop for bucket 69: bucket 50: 100% Sorting block of length 3742352 for bucket 50 (Using difference cover) bucket 58: 30% Sorting block time: 00:00:02 Returning block of 3720134 for bucket 43 bucket 52: 100% Sorting block of length 4325014 for bucket 52 (Using difference cover) bucket 62: 10% bucket 61: 10% Sorting block time: 00:00:01 Returning block of 2023368 for bucket 44 Sorting block time: 00:00:04 Returning block of 3811905 for bucket 39 bucket 63: 10% Getting block 66 of 196 Reserving size (4887258) for bucket 66 Calculating Z arrays for bucket 66 Entering block accumulator loop for bucket 66: Getting block 67 of 196 Reserving size (4887258) for bucket 67 Calculating Z arrays for bucket 67 Entering block accumulator loop for bucket 67: bucket 64: 10% bucket 54: 90% Getting block 68 of 196 Reserving size (4887258) for bucket 68 Calculating Z arrays for bucket 68 Entering block accumulator loop for bucket 68: Sorting block time: 00:00:03 Returning block of 3165602 for bucket 45 bucket 51: 100% Sorting block of length 4827424 for bucket 51 (Using difference cover) bucket 56: 30% Sorting block time: 00:00:06 Returning block of 2830321 for bucket 35 Getting block 69 of 196 Reserving size (4887258) for bucket 69 Calculating Z arrays for bucket 69 Entering block accumulator loop for bucket 69: bucket 57: 30% bucket 57: 30% bucket 62: 10% bucket 54: 90% Getting block 70 of 196 Reserving size (4887258) for bucket 70 Calculating Z arrays for bucket 70 Entering block accumulator loop for bucket 70: bucket 65: 10% Sorting block time: 00:00:04 Returning block of 3788229 for bucket 40 bucket 60: 20% bucket 56: 50% bucket 66: 10% Getting block 70 of 209 Reserving size (4887258) for bucket 70 Calculating Z arrays for bucket 70 Entering block accumulator loop for bucket 70: bucket 63: 10% bucket 59: 20% bucket 61: 20% bucket 64: 10% bucket 65: 10% bucket 67: 10% bucket 59: 30% bucket 60: 20% bucket 58: 30% bucket 55: 50% bucket 53: 100% Sorting block of length 3849777 for bucket 53 (Using difference cover) bucket 68: 10% bucket 55: 40% Sorting block time: 00:00:03 Returning block of 2396266 for bucket 46 bucket 61: 20% bucket 58: 40% Getting block 71 of 196 Reserving size (4887258) for bucket 71 Calculating Z arrays for bucket 71 Entering block accumulator loop for bucket 71: Sorting block time: 00:00:04 Returning block of 4857826 for bucket 39 bucket 66: 10% bucket 62: 20% bucket 69: 10% bucket 67: 10% Sorting block time: 00:00:02 Returning block of 2158354 for bucket 50 bucket 68: 10% bucket 63: 20% Getting block 72 of 196 Reserving size (4887258) for bucket 72 Calculating Z arrays for bucket 72 Entering block accumulator loop for bucket 72: Getting block 71 of 209 Reserving size (4887258) for bucket 71 Calculating Z arrays for bucket 71 Entering block accumulator loop for bucket 71: bucket 54: 100% Sorting block of length 4425764 for bucket 54 (Using difference cover) bucket 64: 20% Sorting block time: 00:00:05 Returning block of 4383104 for bucket 40 bucket 62: 20% Sorting block time: 00:00:02 Returning block of 2285173 for bucket 48 Sorting block time: 00:00:03 Returning block of 3286373 for bucket 47 Getting block 73 of 196 Reserving size (4887258) for bucket 73 Calculating Z arrays for bucket 73 Entering block accumulator loop for bucket 73: Getting block 74 of 196 Reserving size (4887258) for bucket 74 Calculating Z arrays for bucket 74 Entering block accumulator loop for bucket 74: bucket 56: 40% bucket 69: 10% bucket 57: 40% Getting block 75 of 196 Reserving size (4887258) for bucket 75 Calculating Z arrays for bucket 75 Entering block accumulator loop for bucket 75: bucket 70: 10% bucket 57: 40% bucket 54: 100% Sorting block of length 4056232 for bucket 54 (Using difference cover) bucket 63: 20% bucket 65: 20% bucket 60: 30% bucket 56: 60% bucket 66: 20% bucket 59: 30% bucket 70: 10% bucket 65: 20% bucket 61: 30% bucket 64: 20% Sorting block time: 00:00:05 Returning block of 4452831 for bucket 41 bucket 67: 20% bucket 60: 30% bucket 58: 50% bucket 59: 40% Getting block 76 of 196 Reserving size (4887258) for bucket 76 Calculating Z arrays for bucket 76 Entering block accumulator loop for bucket 76: bucket 55: 60% Sorting block time: 00:00:05 Returning block of 4724249 for bucket 42 bucket 61: 30% Sorting block time: 00:00:05 Returning block of 4762827 for bucket 43 bucket 58: 40% bucket 55: 50% bucket 71: 10% bucket 68: 20% bucket 63: 30% Getting block 72 of 209 Reserving size (4887258) for bucket 72 Calculating Z arrays for bucket 72 Entering block accumulator loop for bucket 72: bucket 67: 20% Getting block 73 of 209 Reserving size (4887258) for bucket 73 Calculating Z arrays for bucket 73 Entering block accumulator loop for bucket 73: bucket 72: 10% bucket 68: 20% Sorting block time: 00:00:05 Returning block of 4540615 for bucket 44 bucket 66: 20% bucket 62: 30% bucket 69: 20% bucket 75: 10% bucket 64: 30% Getting block 74 of 209 Reserving size (4887258) for bucket 74 Calculating Z arrays for bucket 74 Entering block accumulator loop for bucket 74: bucket 74: 10% bucket 62: 30% bucket 73: 10% Sorting block time: 00:00:04 Returning block of 3742353 for bucket 50 Sorting block time: 00:00:05 Returning block of 4666577 for bucket 52 bucket 67: 30% bucket 63: 30% bucket 70: 20% bucket 69: 20% Getting block 75 of 209 Reserving size (4887258) for bucket 75 Calculating Z arrays for bucket 75 Entering block accumulator loop for bucket 75: bucket 57: 50% Getting block 76 of 209 Reserving size (4887258) for bucket 76 Calculating Z arrays for bucket 76 Entering block accumulator loop for bucket 76: bucket 71: 10% bucket 57: 50% bucket 65: 30% bucket 59: 40% bucket 56: 50% bucket 65: 30% Sorting block time: 00:00:05 Returning block of 5158515 for bucket 48 bucket 64: 30% bucket 66: 30% bucket 56: 70% bucket 61: 40% Sorting block time: 00:00:06 Returning block of 4703838 for bucket 49 Getting block 77 of 209 Reserving size (4887258) for bucket 77 Calculating Z arrays for bucket 77 Entering block accumulator loop for bucket 77: Sorting block time: 00:00:05 Returning block of 4870402 for bucket 53 bucket 60: 40% bucket 70: 20% bucket 60: 40% Sorting block time: 00:00:06 Returning block of 5931642 for bucket 45 Getting block 77 of 196 Reserving size (4887258) for bucket 77 Calculating Z arrays for bucket 77 Entering block accumulator loop for bucket 77: bucket 76: 10% bucket 72: 20% Getting block 78 of 209 Reserving size (4887258) for bucket 78 Calculating Z arrays for bucket 78 Entering block accumulator loop for bucket 78: bucket 61: 40% bucket 58: 60% Sorting block time: 00:00:05 Returning block of 4607548 for bucket 51 Getting block 79 of 209 Reserving size (4887258) for bucket 79 Calculating Z arrays for bucket 79 Entering block accumulator loop for bucket 79: bucket 59: 50% Sorting block time: 00:00:03 Returning block of 4425765 for bucket 54 bucket 63: 40% Sorting block time: 00:00:05 Returning block of 4325015 for bucket 52 bucket 71: 20% bucket 67: 30% Getting block 80 of 209 Reserving size (4887258) for bucket 80 Calculating Z arrays for bucket 80 Entering block accumulator loop for bucket 80: bucket 66: 30% bucket 55: 60% bucket 55: 70% bucket 68: 30% Getting block 78 of 196 Reserving size (4887258) for bucket 78 Calculating Z arrays for bucket 78 Entering block accumulator loop for bucket 78: Getting block 81 of 209 Reserving size (4887258) for bucket 81 Calculating Z arrays for bucket 81 Entering block accumulator loop for bucket 81: bucket 68: 30% bucket 58: 50% bucket 72: 10% bucket 74: 20% bucket 57: 60% bucket 75: 20% bucket 73: 20% bucket 62: 40% bucket 62: 40% bucket 67: 40% Sorting block time: 00:00:04 Returning block of 3849778 for bucket 53 bucket 63: 40% bucket 69: 30% bucket 73: 10% bucket 70: 30% bucket 56: 80% Sorting block time: 00:00:05 Returning block of 4827425 for bucket 51 Getting block 79 of 196 Reserving size (4887258) for bucket 79 Calculating Z arrays for bucket 79 Entering block accumulator loop for bucket 79: bucket 64: 40% bucket 65: 40% bucket 69: 30% bucket 75: 10% Getting block 80 of 196 Reserving size (4887258) for bucket 80 Calculating Z arrays for bucket 80 Entering block accumulator loop for bucket 80: bucket 74: 10% bucket 57: 60% bucket 65: 40% Sorting block time: 00:00:03 Returning block of 4056233 for bucket 54 bucket 56: 60% bucket 64: 40% bucket 59: 50% bucket 66: 40% bucket 61: 50% bucket 60: 50% bucket 76: 10% bucket 66: 40% bucket 71: 20% Getting block 81 of 196 Reserving size (4887258) for bucket 81 Calculating Z arrays for bucket 81 Entering block accumulator loop for bucket 81: bucket 77: 10% bucket 76: 20% bucket 72: 30% bucket 61: 50% bucket 80: 10% bucket 77: 10% bucket 70: 30% bucket 60: 50% bucket 67: 40% bucket 71: 30% bucket 78: 10% bucket 79: 10% bucket 63: 50% bucket 55: 80% bucket 68: 40% bucket 58: 70% bucket 78: 10% bucket 68: 40% bucket 74: 30% bucket 73: 30% bucket 72: 20% bucket 55: 70% bucket 62: 50% bucket 59: 60% bucket 75: 30% bucket 63: 50% bucket 58: 60% bucket 62: 50% bucket 69: 40% bucket 57: 70% bucket 69: 40% bucket 67: 50% bucket 70: 40% bucket 81: 10% bucket 56: 90% bucket 65: 50% bucket 73: 20% bucket 79: 10% bucket 64: 50% bucket 74: 20% bucket 59: 60% bucket 64: 50% bucket 65: 50% bucket 75: 20% bucket 66: 50% bucket 80: 10% bucket 56: 70% bucket 77: 20% bucket 61: 60% bucket 61: 60% bucket 76: 30% bucket 72: 40% bucket 77: 20% bucket 60: 60% bucket 81: 10% bucket 66: 50% bucket 57: 70% bucket 80: 20% bucket 71: 30% bucket 68: 50% bucket 76: 20% bucket 55: 90% bucket 71: 40% bucket 55: 80% bucket 60: 60% bucket 68: 50% bucket 67: 50% bucket 74: 40% bucket 63: 60% bucket 70: 40% bucket 73: 40% bucket 63: 60% bucket 62: 60% bucket 78: 20% bucket 70: 50% bucket 78: 20% bucket 79: 20% bucket 58: 80% bucket 75: 40% bucket 72: 30% bucket 62: 60% bucket 59: 70% bucket 65: 60% bucket 56: 80% bucket 69: 50% bucket 57: 80% bucket 56: 100% Sorting block of length 4707021 for bucket 56 (Using difference cover) bucket 69: 50% bucket 67: 60% bucket 59: 70% bucket 79: 20% bucket 58: 70% bucket 64: 60% bucket 81: 20% bucket 73: 30% bucket 74: 30% bucket 65: 60% bucket 66: 60% bucket 64: 60% bucket 77: 30% bucket 61: 70% bucket 76: 40% bucket 72: 50% bucket 61: 70% bucket 75: 30% bucket 80: 20% bucket 60: 70% bucket 63: 70% bucket 81: 20% bucket 63: 70% bucket 66: 60% bucket 68: 60% bucket 80: 30% bucket 77: 30% bucket 71: 50% bucket 68: 60% bucket 73: 50% bucket 57: 80% bucket 71: 40% bucket 55: 100% Sorting block of length 1245938 for bucket 55 (Using difference cover) bucket 74: 50% bucket 55: 90% bucket 76: 30% bucket 67: 60% bucket 70: 60% bucket 60: 70% bucket 62: 70% bucket 78: 30% bucket 70: 50% bucket 75: 50% bucket 79: 30% bucket 58: 90% bucket 78: 30% bucket 65: 70% bucket 72: 40% bucket 62: 70% bucket 59: 80% bucket 59: 80% bucket 61: 80% bucket 69: 60% bucket 64: 70% bucket 79: 30% bucket 73: 60% bucket 57: 90% bucket 69: 60% bucket 63: 80% bucket 56: 90% bucket 77: 40% bucket 58: 80% bucket 76: 50% bucket 72: 60% bucket 66: 70% bucket 81: 30% bucket 65: 70% bucket 64: 70% bucket 67: 70% bucket 74: 40% Sorting block time: 00:00:01 Returning block of 1245939 for bucket 55 Getting block 82 of 209 Reserving size (4887258) for bucket 82 Calculating Z arrays for bucket 82 Entering block accumulator loop for bucket 82: bucket 61: 80% bucket 60: 80% bucket 73: 40% bucket 63: 80% bucket 81: 30% bucket 78: 40% bucket 71: 60% bucket 75: 40% bucket 68: 70% bucket 80: 30% bucket 66: 70% bucket 74: 60% bucket 68: 70% bucket 80: 40% bucket 77: 40% bucket 62: 80% bucket 67: 70% bucket 70: 70% bucket 76: 40% bucket 55: 100% Sorting block of length 2324188 for bucket 55 (Using difference cover) bucket 71: 50% bucket 57: 90% bucket 58: 100% Sorting block of length 4407340 for bucket 58 (Using difference cover) bucket 70: 60% bucket 75: 60% bucket 60: 80% bucket 65: 80% bucket 78: 40% bucket 79: 40% bucket 63: 90% bucket 62: 80% bucket 61: 90% bucket 73: 70% bucket 72: 50% bucket 64: 80% bucket 59: 90% bucket 66: 80% bucket 79: 40% bucket 77: 50% bucket 69: 70% bucket 59: 90% bucket 76: 60% bucket 57: 100% Sorting block of length 2715508 for bucket 57 (Using difference cover) bucket 69: 70% bucket 72: 70% bucket 56: 100% Sorting block of length 4408987 for bucket 56 (Using difference cover) bucket 58: 90% bucket 60: 90% bucket 65: 80% bucket 64: 80% bucket 78: 50% bucket 67: 80% bucket 61: 90% bucket 74: 50% bucket 71: 70% bucket 81: 40% bucket 63: 90% bucket 74: 70% bucket 82: 10% bucket 81: 40% bucket 73: 50% bucket 68: 80% bucket 80: 40% bucket 68: 80% bucket 66: 80% bucket 75: 50% bucket 62: 90% bucket 67: 80% bucket 80: 50% bucket 70: 80% bucket 75: 70% bucket 57: 100% Sorting block of length 1213428 for bucket 57 (Using difference cover) bucket 71: 60% bucket 76: 50% bucket 77: 50% bucket 65: 90% bucket 70: 70% bucket 63: 100% Sorting block of length 1668814 for bucket 63 (Using difference cover) bucket 60: 90% Sorting block time: 00:00:05 Returning block of 4707022 for bucket 56 bucket 61: 100% Sorting block of length 4550830 for bucket 61 (Using difference cover) bucket 59: 100% Sorting block of length 4848231 for bucket 59 (Using difference cover) bucket 73: 80% bucket 64: 90% Getting block 83 of 209 Reserving size (4887258) for bucket 83 Calculating Z arrays for bucket 83 Entering block accumulator loop for bucket 83: bucket 62: 90% bucket 77: 60% bucket 79: 50% bucket 66: 90% bucket 69: 80% bucket 76: 70% bucket 72: 60% bucket 78: 50% bucket 72: 80% bucket 79: 50% bucket 59: 100% Sorting block of length 3079460 for bucket 59 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2324189 for bucket 55 bucket 60: 100% Sorting block of length 4819906 for bucket 60 (Using difference cover) Getting block 82 of 196 Reserving size (4887258) for bucket 82 Calculating Z arrays for bucket 82 Entering block accumulator loop for bucket 82: bucket 69: 80% bucket 78: 60% bucket 58: 100% Sorting block of length 3708182 for bucket 58 (Using difference cover) bucket 65: 90% bucket 74: 80% bucket 64: 90% bucket 71: 80% Sorting block time: 00:00:01 Returning block of 1213429 for bucket 57 bucket 61: 100% Sorting block of length 1755701 for bucket 61 (Using difference cover) Getting block 84 of 209 Reserving size (4887258) for bucket 84 Calculating Z arrays for bucket 84 Entering block accumulator loop for bucket 84: bucket 63: 100% Sorting block of length 442998 for bucket 63 (Using difference cover) bucket 62: 100% Sorting block of length 4679776 for bucket 62 (Using difference cover) bucket 67: 90% bucket 68: 90% bucket 81: 50% bucket 74: 60% bucket 81: 50% bucket 73: 60% bucket 82: 20% bucket 80: 50% bucket 75: 80% bucket 68: 90% bucket 67: 90% bucket 66: 90% bucket 70: 90% bucket 75: 60% bucket 65: 100% Sorting block of length 3733974 for bucket 65 (Using difference cover) Sorting block time: 00:00:00 Returning block of 442999 for bucket 63 Getting block 85 of 209 Reserving size (4887258) for bucket 85 Calculating Z arrays for bucket 85 Entering block accumulator loop for bucket 85: bucket 80: 60% bucket 71: 70% bucket 76: 60% bucket 64: 100% Sorting block of length 4042132 for bucket 64 (Using difference cover) bucket 73: 90% bucket 77: 60% Sorting block time: 00:00:03 Returning block of 2715509 for bucket 57 bucket 70: 80% bucket 60: 100% Sorting block of length 4555803 for bucket 60 (Using difference cover) Getting block 83 of 196 Reserving size (4887258) for bucket 83 Calculating Z arrays for bucket 83 Entering block accumulator loop for bucket 83: bucket 66: 100% Sorting block of length 4583215 for bucket 66 (Using difference cover) bucket 77: 70% bucket 69: 90% bucket 62: 100% Sorting block of length 4483848 for bucket 62 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4407341 for bucket 58 bucket 72: 90% bucket 69: 90% bucket 83: 10% bucket 79: 60% bucket 79: 60% Getting block 86 of 209 Reserving size (4887258) for bucket 86 Calculating Z arrays for bucket 86 Entering block accumulator loop for bucket 86: Sorting block time: 00:00:02 Returning block of 1668815 for bucket 63 bucket 78: 60% Getting block 84 of 196 Reserving size (4887258) for bucket 84 Calculating Z arrays for bucket 84 Entering block accumulator loop for bucket 84: bucket 72: 70% bucket 78: 70% bucket 76: 80% bucket 82: 10% bucket 74: 90% bucket 65: 100% Sorting block of length 1091251 for bucket 65 (Using difference cover) bucket 71: 90% bucket 68: 100% Sorting block of length 2779760 for bucket 68 (Using difference cover) Sorting block time: 00:00:01 Returning block of 1755702 for bucket 61 bucket 64: 100% Sorting block of length 4664920 for bucket 64 (Using difference cover) bucket 81: 60% Getting block 87 of 209 Reserving size (4887258) for bucket 87 Calculating Z arrays for bucket 87 Entering block accumulator loop for bucket 87: bucket 67: 100% Sorting block of length 2644037 for bucket 67 (Using difference cover) bucket 75: 90% bucket 67: 100% Sorting block of length 3518102 for bucket 67 (Using difference cover) bucket 84: 10% bucket 70: 100% Sorting block of length 1220959 for bucket 70 (Using difference cover) bucket 80: 60% bucket 74: 70% bucket 73: 70% bucket 82: 30% bucket 81: 60% bucket 66: 100% Sorting block of length 4129849 for bucket 66 (Using difference cover) bucket 75: 70% bucket 73: 100% Sorting block of length 4639648 for bucket 73 (Using difference cover) bucket 68: 100% Sorting block of length 466615 for bucket 68 (Using difference cover) bucket 80: 70% bucket 69: 100% Sorting block of length 4700364 for bucket 69 (Using difference cover) bucket 71: 80% bucket 77: 80% bucket 72: 100% Sorting block of length 4258215 for bucket 72 (Using difference cover) Sorting block time: 00:00:03 bucket 76: 70% Sorting block time: 00:00:01 Returning block of 3079461 for bucket 59 Returning block of 1091252 for bucket 65 Getting block 88 of 209 Reserving size (4887258) for bucket 88 Calculating Z arrays for bucket 88 Entering block accumulator loop for bucket 88: bucket 70: 90% bucket 85: 10% bucket 83: 10% Getting block 89 of 209 Reserving size (4887258) for bucket 89 Calculating Z arrays for bucket 89 Entering block accumulator loop for bucket 89: bucket 77: 70% Sorting block time: 00:00:04 Returning block of 4408988 for bucket 56 bucket 69: 100% Sorting block of length 3805685 for bucket 69 (Using difference cover) Sorting block time: 00:00:00 Returning block of 466616 for bucket 68 Getting block 90 of 209 Reserving size (4887258) for bucket 90 Calculating Z arrays for bucket 90 Entering block accumulator loop for bucket 90: bucket 78: 80% bucket 79: 70% bucket 74: 100% Sorting block of length 4751479 for bucket 74 (Using difference cover) bucket 76: 90% bucket 83: 20% bucket 84: 10% Getting block 85 of 196 Reserving size (4887258) for bucket 85 Calculating Z arrays for bucket 85 Entering block accumulator loop for bucket 85: bucket 79: 70% bucket 82: 20% bucket 71: 100% bucket 86: 10% Sorting block of length 4755407 for bucket 71 (Using difference cover) bucket 72: 80% bucket 78: 70% Sorting block time: 00:00:02 Returning block of 1220960 for bucket 70 Getting block 86 of 196 Reserving size (4887258) for bucket 86 Calculating Z arrays for bucket 86 Entering block accumulator loop for bucket 86: bucket 75: 100% Sorting block of length 3922448 for bucket 75 (Using difference cover) bucket 81: 70% Sorting block time: 00:00:04 Returning block of 4550831 for bucket 61 Sorting block time: 00:00:03 Returning block of 3733975 for bucket 65 Sorting block time: 00:00:04 Returning block of 4819907 for bucket 60 bucket 80: 70% bucket 87: 10% Getting block 87 of 196 Reserving size (4887258) for bucket 87 Calculating Z arrays for bucket 87 Entering block accumulator loop for bucket 87: Getting block 88 of 196 Reserving size (4887258) for bucket 88 Calculating Z arrays for bucket 88 Entering block accumulator loop for bucket 88: Getting block 89 of 196 Reserving size (4887258) for bucket 89 Calculating Z arrays for bucket 89 Entering block accumulator loop for bucket 89: bucket 84: 20% Sorting block time: 00:00:04 Returning block of 3708183 for bucket 58 bucket 73: 80% bucket 82: 40% Sorting block time: 00:00:04 Returning block of 4848232 for bucket 59 bucket 81: 70% Getting block 90 of 196 Reserving size (4887258) for bucket 90 Calculating Z arrays for bucket 90 Entering block accumulator loop for bucket 90: bucket 75: 80% Sorting block time: 00:00:04 Returning block of 4042133 for bucket 64 Getting block 91 of 196 Reserving size (4887258) for bucket 91 Calculating Z arrays for bucket 91 Entering block accumulator loop for bucket 91: bucket 77: 90% bucket 74: 80% bucket 84: 20% bucket 80: 80% Getting block 92 of 196 Reserving size (4887258) for bucket 92 Calculating Z arrays for bucket 92 Entering block accumulator loop for bucket 92: bucket 71: 90% Sorting block time: 00:00:03 Returning block of 2644038 for bucket 67 bucket 83: 20% bucket 70: 100% Sorting block of length 2301410 for bucket 70 (Using difference cover) bucket 76: 80% bucket 78: 90% bucket 76: 100% Sorting block of length 4627996 for bucket 76 (Using difference cover) bucket 88: 10% Getting block 91 of 209 Reserving size (4887258) for bucket 91 Calculating Z arrays for bucket 91 Entering block accumulator loop for bucket 91: bucket 85: 20% bucket 89: 10% bucket 77: 80% Sorting block time: 00:00:03 Returning block of 2779761 for bucket 68 bucket 90: 10% Getting block 93 of 196 Reserving size (4887258) for bucket 93 Calculating Z arrays for bucket 93 Entering block accumulator loop for bucket 93: bucket 83: 30% bucket 82: 30% bucket 79: 80% Sorting block time: 00:00:04 Returning block of 4583216 for bucket 66 Sorting block time: 00:00:03 Returning block of 4664921 for bucket 64 bucket 79: 80% bucket 85: 10% bucket 72: 90% bucket 86: 10% bucket 86: 20% bucket 78: 80% Getting block 94 of 196 Reserving size (4887258) for bucket 94 Calculating Z arrays for bucket 94 Entering block accumulator loop for bucket 94: Getting block 92 of 209 Reserving size (4887258) for bucket 92 Calculating Z arrays for bucket 92 Entering block accumulator loop for bucket 92: Sorting block time: 00:00:03 Returning block of 3518103 for bucket 67 bucket 81: 80% Getting block 95 of 196 Reserving size (4887258) for bucket 95 Calculating Z arrays for bucket 95 Entering block accumulator loop for bucket 95: bucket 82: 50% bucket 80: 80% bucket 87: 10% Sorting block time: 00:00:05 Returning block of 4679777 for bucket 62 Sorting block time: 00:00:05 Returning block of 4555804 for bucket 60 bucket 87: 20% bucket 88: 10% bucket 89: 10% bucket 77: 100% Sorting block of length 3119930 for bucket 77 (Using difference cover) Getting block 96 of 196 Reserving size (4887258) for bucket 96 Calculating Z arrays for bucket 96 Entering block accumulator loop for bucket 96: bucket 84: 30% bucket 73: 90% Getting block 93 of 209 Reserving size (4887258) for bucket 93 Calculating Z arrays for bucket 93 Entering block accumulator loop for bucket 93: bucket 81: 80% bucket 84: 30% bucket 78: 100% Sorting block of length 4599468 for bucket 78 (Using difference cover) bucket 90: 10% Sorting block time: 00:00:03 Returning block of 4129850 for bucket 66 bucket 75: 90% bucket 74: 90% Sorting block time: 00:00:03 Returning block of 4639649 for bucket 73 bucket 80: 90% Sorting block time: 00:00:04 Returning block of 4483849 for bucket 62 bucket 92: 10% bucket 83: 30% Sorting block time: 00:00:04 Returning block of 3805686 for bucket 69 Getting block 94 of 209 Reserving size (4887258) for bucket 94 Calculating Z arrays for bucket 94 Entering block accumulator loop for bucket 94: bucket 91: 10% Getting block 97 of 196 Reserving size (4887258) for bucket 97 Calculating Z arrays for bucket 97 Entering block accumulator loop for bucket 97: Sorting block time: 00:00:04 Returning block of 4258216 for bucket 72 Getting block 95 of 209 Reserving size (4887258) for bucket 95 Calculating Z arrays for bucket 95 Entering block accumulator loop for bucket 95: Sorting block time: 00:00:03 Returning block of 3922449 for bucket 75 Getting block 98 of 196 Reserving size (4887258) for bucket 98 Calculating Z arrays for bucket 98 Entering block accumulator loop for bucket 98: bucket 88: 20% bucket 91: 10% Sorting block time: 00:00:02 Returning block of 2301411 for bucket 70 bucket 85: 30% bucket 71: 100% Sorting block of length 3536643 for bucket 71 (Using difference cover) Getting block 96 of 209 Reserving size (4887258) for bucket 96 Calculating Z arrays for bucket 96 Entering block accumulator loop for bucket 96: bucket 94: 10% Getting block 99 of 196 Reserving size (4887258) for bucket 99 Calculating Z arrays for bucket 99 Entering block accumulator loop for bucket 99: Getting block 100 of 196 Reserving size (4887258) for bucket 100 Calculating Z arrays for bucket 100 Entering block accumulator loop for bucket 100: bucket 77: 90% bucket 90: 20% bucket 82: 40% bucket 76: 90% bucket 79: 90% bucket 93: 10% bucket 82: 60% bucket 83: 40% bucket 85: 20% bucket 89: 20% bucket 86: 20% bucket 72: 100% Sorting block of length 3525146 for bucket 72 (Using difference cover) bucket 79: 90% bucket 78: 90% bucket 86: 30% Sorting block time: 00:00:04 Returning block of 4700365 for bucket 69 Sorting block time: 00:00:04 Returning block of 4751480 for bucket 74 bucket 81: 90% bucket 92: 10% bucket 95: 10% bucket 80: 90% Getting block 97 of 209 Reserving size (4887258) for bucket 97 Calculating Z arrays for bucket 97 Entering block accumulator loop for bucket 97: Getting block 101 of 196 Reserving size (4887258) for bucket 101 Calculating Z arrays for bucket 101 Entering block accumulator loop for bucket 101: bucket 87: 20% bucket 88: 20% bucket 89: 20% bucket 87: 30% bucket 73: 100% Sorting block of length 4417432 for bucket 73 (Using difference cover) bucket 96: 10% bucket 84: 40% bucket 84: 40% bucket 93: 10% bucket 81: 90% bucket 90: 20% bucket 75: 100% Sorting block of length 2293030 for bucket 75 (Using difference cover) bucket 83: 40% bucket 80: 100% Sorting block of length 3477146 for bucket 80 (Using difference cover) bucket 74: 100% Sorting block of length 4499368 for bucket 74 (Using difference cover) bucket 92: 20% bucket 91: 20% Sorting block time: 00:00:04 Returning block of 4755408 for bucket 71 bucket 94: 10% bucket 98: 10% bucket 88: 30% bucket 91: 20% bucket 79: 100% Sorting block of length 4464924 for bucket 79 (Using difference cover) Getting block 102 of 196 Reserving size (4887258) for bucket 102 Calculating Z arrays for bucket 102 Entering block accumulator loop for bucket 102: bucket 82: 50% Sorting block time: 00:00:03 Returning block of 3119931 for bucket 77 bucket 85: 40% bucket 95: 10% bucket 94: 20% bucket 99: 10% bucket 85: 30% bucket 100: 10% bucket 90: 30% bucket 76: 100% Sorting block of length 3765413 for bucket 76 (Using difference cover) bucket 77: 100% Sorting block of length 3540996 for bucket 77 (Using difference cover) Getting block 103 of 196 Reserving size (4887258) for bucket 103 Calculating Z arrays for bucket 103 Entering block accumulator loop for bucket 103: bucket 97: 10% bucket 96: 10% bucket 86: 30% bucket 93: 20% bucket 83: 50% bucket 82: 70% bucket 89: 30% bucket 79: 100% Sorting block of length 4830913 for bucket 79 (Using difference cover) bucket 81: 100% Sorting block of length 3496835 for bucket 81 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4627997 for bucket 76 bucket 78: 100% Sorting block of length 3493190 for bucket 78 (Using difference cover) bucket 86: 40% bucket 80: 100% Sorting block of length 3732898 for bucket 80 (Using difference cover) bucket 87: 30% Getting block 104 of 196 Reserving size (4887258) for bucket 104 Calculating Z arrays for bucket 104 Entering block accumulator loop for bucket 104: bucket 92: 20% bucket 88: 30% bucket 95: 20% bucket 101: 10% bucket 89: 30% bucket 97: 10% bucket 84: 50% bucket 87: 40% Sorting block time: 00:00:03 Returning block of 3536644 for bucket 71 bucket 96: 20% bucket 84: 50% bucket 93: 20% Getting block 98 of 209 bucket 81: 100% Reserving size (4887258) for bucket 98 Sorting block of length 4806365 for bucket 81 Calculating Z arrays for bucket 98 (Using difference cover) Entering block accumulator loop for bucket 98: bucket 90: 30% bucket 83: 50% bucket 92: 30% bucket 91: 30% Sorting block time: 00:00:02 Returning block of 2293031 for bucket 75 Sorting block time: 00:00:04 Returning block of 4599469 for bucket 78 bucket 82: 60% Sorting block time: 00:00:03 Returning block of 3525147 for bucket 72 bucket 94: 20% bucket 98: 20% Getting block 99 of 209 Reserving size (4887258) for bucket 99 Calculating Z arrays for bucket 99 Entering block accumulator loop for bucket 99: bucket 91: 30% bucket 88: 40% bucket 85: 40% Getting block 100 of 209 Reserving size (4887258) for bucket 100 Calculating Z arrays for bucket 100 Entering block accumulator loop for bucket 100: bucket 102: 10% bucket 85: 50% Getting block 105 of 196 Reserving size (4887258) for bucket 105 Calculating Z arrays for bucket 105 Entering block accumulator loop for bucket 105: bucket 86: 40% bucket 94: 30% bucket 99: 20% bucket 100: 20% bucket 90: 40% bucket 83: 60% bucket 93: 30% bucket 82: 80% bucket 95: 20% bucket 96: 20% bucket 103: 10% bucket 89: 40% bucket 87: 40% bucket 97: 20% bucket 88: 40% bucket 86: 50% bucket 92: 30% bucket 104: 10% bucket 89: 40% bucket 95: 30% bucket 101: 20% bucket 84: 60% bucket 97: 20% bucket 87: 50% bucket 96: 30% Sorting block time: 00:00:03 Returning block of 3477147 for bucket 80 bucket 90: 40% bucket 84: 60% bucket 83: 60% bucket 93: 30% Getting block 101 of 209 Reserving size (4887258) for bucket 101 Calculating Z arrays for bucket 101 Entering block accumulator loop for bucket 101: bucket 91: 40% bucket 94: 40% bucket 98: 10% bucket 92: 40% Sorting block time: 00:00:04 Returning block of 4417433 for bucket 73 bucket 82: 70% Sorting block time: 00:00:03 Returning block of 3765414 for bucket 76 Getting block 102 of 209 Reserving size (4887258) for bucket 102 Calculating Z arrays for bucket 102 Entering block accumulator loop for bucket 102: bucket 85: 50% bucket 98: 30% bucket 91: 40% bucket 88: 50% bucket 86: 50% bucket 94: 30% Getting block 103 of 209 Reserving size (4887258) for bucket 103 Calculating Z arrays for bucket 103 Entering block accumulator loop for bucket 103: bucket 85: 60% bucket 102: 20% bucket 99: 30% bucket 99: 10% Sorting block time: 00:00:03 Returning block of 3540997 for bucket 77 bucket 90: 50% bucket 100: 30% bucket 93: 40% bucket 83: 70% Sorting block time: 00:00:03 Returning block of 3493191 for bucket 78 bucket 100: 10% Sorting block time: 00:00:03 Returning block of 3496836 for bucket 81 bucket 82: 90% bucket 87: 50% Getting block 104 of 209 Reserving size (4887258) for bucket 104 Calculating Z arrays for bucket 104 Entering block accumulator loop for bucket 104: bucket 105: 10% bucket 103: 20% bucket 88: 50% Getting block 106 of 196 Reserving size (4887258) for bucket 106 Calculating Z arrays for bucket 106 Entering block accumulator loop for bucket 106: Getting block 105 of 209 Reserving size (4887258) for bucket 105 Calculating Z arrays for bucket 105 Entering block accumulator loop for bucket 105: bucket 95: 30% Sorting block time: 00:00:04 Returning block of 3732899 for bucket 80 bucket 96: 30% bucket 86: 60% Getting block 107 of 196 Reserving size (4887258) for bucket 107 Calculating Z arrays for bucket 107 Entering block accumulator loop for bucket 107: bucket 89: 50% bucket 89: 50% bucket 92: 40% Sorting block time: 00:00:05 Returning block of 4499369 for bucket 74 bucket 104: 20% bucket 101: 30% bucket 95: 40% bucket 97: 30% bucket 84: 70% bucket 90: 50% Sorting block time: 00:00:04 Returning block of 4464925 for bucket 79 Getting block 106 of 209 Reserving size (4887258) for bucket 106 Calculating Z arrays for bucket 106 Entering block accumulator loop for bucket 106: bucket 87: 60% Getting block 108 of 196 Reserving size (4887258) for bucket 108 Calculating Z arrays for bucket 108 Entering block accumulator loop for bucket 108: bucket 97: 30% bucket 96: 40% bucket 94: 50% bucket 83: 70% bucket 84: 70% bucket 91: 50% bucket 93: 40% bucket 92: 50% bucket 82: 80% bucket 101: 10% bucket 98: 20% bucket 86: 60% Sorting block time: 00:00:05 Returning block of 4830914 for bucket 79 bucket 98: 40% bucket 88: 60% bucket 85: 60% bucket 87: 60% bucket 94: 40% Getting block 107 of 209 Reserving size (4887258) for bucket 107 Calculating Z arrays for bucket 107 Entering block accumulator loop for bucket 107: bucket 95: 40% bucket 85: 70% bucket 91: 50% bucket 99: 40% bucket 90: 60% bucket 102: 30% bucket 93: 50% bucket 88: 60% bucket 82: 100% Sorting block of length 3955520 for bucket 82 (Using difference cover) bucket 100: 40% bucket 102: 10% bucket 83: 80% bucket 103: 10% bucket 99: 20% bucket 100: 20% Sorting block time: 00:00:04 Returning block of 4806366 for bucket 81 bucket 90: 60% bucket 103: 30% bucket 105: 20% bucket 89: 60% bucket 106: 10% bucket 104: 10% bucket 89: 60% Getting block 108 of 209 Reserving size (4887258) for bucket 108 Calculating Z arrays for bucket 108 Entering block accumulator loop for bucket 108: bucket 105: 10% bucket 86: 70% bucket 92: 50% bucket 84: 80% bucket 107: 10% bucket 101: 40% bucket 95: 50% bucket 96: 40% bucket 104: 30% bucket 97: 40% bucket 94: 60% bucket 96: 50% bucket 87: 70% bucket 83: 80% bucket 108: 10% bucket 106: 10% bucket 91: 60% bucket 97: 40% bucket 92: 60% bucket 93: 50% bucket 82: 90% bucket 84: 80% bucket 86: 70% bucket 101: 20% bucket 85: 70% bucket 87: 70% bucket 98: 30% bucket 98: 50% bucket 88: 70% bucket 88: 70% bucket 99: 50% bucket 94: 50% bucket 91: 60% bucket 93: 60% bucket 90: 70% bucket 85: 80% bucket 102: 40% bucket 83: 90% bucket 100: 50% bucket 95: 50% bucket 107: 10% bucket 90: 70% bucket 89: 70% bucket 102: 20% bucket 103: 20% bucket 105: 30% bucket 100: 30% bucket 103: 40% bucket 99: 30% bucket 106: 20% bucket 84: 90% bucket 89: 70% bucket 92: 60% bucket 86: 80% bucket 104: 20% bucket 108: 10% bucket 101: 50% bucket 107: 20% bucket 95: 60% bucket 105: 20% bucket 104: 40% bucket 96: 50% bucket 96: 60% bucket 94: 70% bucket 83: 90% bucket 87: 80% bucket 91: 70% bucket 82: 100% Sorting block of length 2444786 for bucket 82 (Using difference cover) bucket 108: 20% bucket 97: 50% bucket 92: 70% bucket 93: 60% bucket 106: 20% bucket 97: 50% bucket 86: 80% bucket 84: 90% bucket 87: 80% bucket 85: 80% bucket 88: 80% bucket 98: 60% bucket 88: 80% Sorting block time: 00:00:04 Returning block of 3955521 for bucket 82 bucket 101: 30% bucket 99: 60% bucket 98: 40% bucket 91: 70% bucket 93: 70% bucket 94: 60% bucket 83: 100% Sorting block of length 2046014 for bucket 83 (Using difference cover) bucket 100: 60% bucket 90: 80% bucket 102: 50% Getting block 109 of 209 Reserving size (4887258) for bucket 109 Calculating Z arrays for bucket 109 Entering block accumulator loop for bucket 109: bucket 85: 90% bucket 89: 80% bucket 90: 80% bucket 95: 60% bucket 84: 100% Sorting block of length 4857056 for bucket 84 (Using difference cover) bucket 105: 40% bucket 103: 50% bucket 102: 30% bucket 89: 80% bucket 107: 20% bucket 100: 40% bucket 106: 30% bucket 103: 30% bucket 99: 40% bucket 92: 70% bucket 101: 60% bucket 86: 90% bucket 95: 70% bucket 107: 30% bucket 104: 30% bucket 108: 20% bucket 104: 50% bucket 83: 100% Sorting block of length 4603032 for bucket 83 (Using difference cover) bucket 96: 60% bucket 105: 30% bucket 96: 70% bucket 91: 80% bucket 94: 80% bucket 87: 90% bucket 86: 90% bucket 92: 80% bucket 108: 30% bucket 93: 70% bucket 87: 90% bucket 85: 90% bucket 97: 60% bucket 84: 100% Sorting block of length 3112622 for bucket 84 (Using difference cover) bucket 88: 90% bucket 97: 60% bucket 106: 30% bucket 98: 70% bucket 88: 90% Sorting block time: 00:00:02 Returning block of 2444787 for bucket 82 bucket 99: 70% bucket 109: 10% bucket 89: 90% bucket 93: 80% bucket 91: 80% Getting block 109 of 196 Reserving size (4887258) for bucket 109 Calculating Z arrays for bucket 109 Entering block accumulator loop for bucket 109: bucket 100: 70% bucket 90: 90% bucket 101: 40% bucket 98: 50% bucket 85: 100% Sorting block of length 3356430 for bucket 85 (Using difference cover) bucket 90: 90% bucket 94: 70% bucket 102: 60% Sorting block time: 00:00:02 Returning block of 2046015 for bucket 83 bucket 105: 50% Getting block 110 of 209 Reserving size (4887258) for bucket 110 Calculating Z arrays for bucket 110 Entering block accumulator loop for bucket 110: bucket 89: 90% bucket 95: 70% bucket 103: 60% bucket 106: 40% bucket 102: 40% bucket 92: 80% bucket 101: 70% bucket 86: 100% Sorting block of length 3561087 for bucket 86 (Using difference cover) bucket 103: 40% bucket 107: 40% bucket 107: 30% bucket 100: 50% bucket 95: 80% bucket 99: 50% bucket 108: 30% bucket 104: 40% bucket 91: 90% bucket 86: 100% Sorting block of length 3521590 for bucket 86 (Using difference cover) bucket 96: 70% bucket 104: 60% bucket 94: 90% bucket 96: 80% bucket 87: 100% Sorting block of length 3516845 for bucket 87 (Using difference cover) bucket 92: 90% bucket 105: 40% bucket 85: 100% Sorting block of length 2277612 for bucket 85 (Using difference cover) bucket 88: 100% Sorting block of length 78851 for bucket 88 (Using difference cover) bucket 87: 100% Sorting block of length 2781949 for bucket 87 (Using difference cover) Sorting block time: 00:00:00 Returning block of 78852 for bucket 88 Getting block 110 of 196 Reserving size (4887258) for bucket 110 Calculating Z arrays for bucket 110 Entering block accumulator loop for bucket 110: bucket 108: 40% bucket 93: 80% bucket 97: 70% bucket 97: 70% bucket 106: 40% bucket 98: 80% bucket 89: 100% Sorting block of length 7142537 for bucket 89 (Using difference cover) bucket 109: 20% bucket 88: 100% Sorting block of length 2859396 for bucket 88 (Using difference cover) bucket 99: 80% bucket 90: 100% Sorting block of length 1676352 for bucket 90 (Using difference cover) bucket 91: 90% bucket 90: 100% Sorting block of length 4638434 for bucket 90 (Using difference cover) bucket 109: 10% bucket 93: 90% bucket 101: 50% bucket 98: 60% bucket 110: 10% bucket 105: 60% bucket 102: 70% bucket 94: 80% bucket 100: 80% bucket 89: 100% Sorting block of length 4483971 for bucket 89 (Using difference cover) bucket 92: 100% Sorting block of length 3775645 for bucket 92 (Using difference cover) bucket 103: 70% bucket 106: 50% bucket 92: 90% bucket 101: 80% Sorting block time: 00:00:03 Returning block of 3112623 for bucket 84 bucket 107: 50% Getting block 111 of 209 Reserving size (4887258) for bucket 111 Calculating Z arrays for bucket 111 Entering block accumulator loop for bucket 111: bucket 100: 60% bucket 95: 80% Sorting block time: 00:00:04 Returning block of 4857057 for bucket 84 bucket 103: 50% bucket 91: 100% Sorting block of length 4460592 for bucket 91 (Using difference cover) bucket 107: 40% bucket 102: 50% bucket 99: 60% bucket 94: 100% Sorting block of length 2577045 for bucket 94 (Using difference cover) bucket 108: 40% Getting block 111 of 196 Reserving size (4887258) for bucket 111 Calculating Z arrays for bucket 111 Entering block accumulator loop for bucket 111: bucket 104: 50% bucket 96: 90% bucket 104: 70% bucket 93: 100% Sorting block of length 4541881 for bucket 93 (Using difference cover) bucket 95: 90% bucket 96: 80% bucket 97: 80% bucket 93: 90% bucket 105: 50% Sorting block time: 00:00:02 bucket 108: 50% Returning block of 2277613 for bucket 85 bucket 110: 10% Getting block 112 of 196 Reserving size (4887258) for bucket 112 Calculating Z arrays for bucket 112 Entering block accumulator loop for bucket 112: Sorting block time: 00:00:03 Returning block of 3356431 for bucket 85 Sorting block time: 00:00:05 Returning block of 4603033 for bucket 83 bucket 98: 90% bucket 109: 30% Getting block 112 of 209 Reserving size (4887258) for bucket 112 Calculating Z arrays for bucket 112 Entering block accumulator loop for bucket 112: bucket 97: 80% bucket 99: 90% bucket 91: 100% Sorting block of length 3795369 for bucket 91 (Using difference cover) bucket 106: 50% Getting block 113 of 196 Reserving size (4887258) for bucket 113 Calculating Z arrays for bucket 113 Entering block accumulator loop for bucket 113: bucket 100: 70% bucket 109: 20% bucket 110: 20% Sorting block time: 00:00:03 Returning block of 3561088 for bucket 86 bucket 105: 70% bucket 100: 90% Getting block 113 of 209 Reserving size (4887258) for bucket 113 Calculating Z arrays for bucket 113 Entering block accumulator loop for bucket 113: bucket 102: 80% bucket 101: 60% Sorting block time: 00:00:02 Returning block of 2781950 for bucket 87 Sorting block time: 00:00:03 Returning block of 3521591 for bucket 86 bucket 98: 70% Sorting block time: 00:00:03 Returning block of 3516846 for bucket 87 Getting block 114 of 209 Reserving size (4887258) for bucket 114 Calculating Z arrays for bucket 114 Entering block accumulator loop for bucket 114: bucket 103: 80% bucket 92: 100% Sorting block of length 2246065 for bucket 92 (Using difference cover) bucket 101: 90% bucket 106: 60% bucket 95: 90% Getting block 114 of 196 Reserving size (4887258) for bucket 114 Calculating Z arrays for bucket 114 Entering block accumulator loop for bucket 114: bucket 107: 60% bucket 111: 10% Getting block 115 of 196 Reserving size (4887258) for bucket 115 Calculating Z arrays for bucket 115 Entering block accumulator loop for bucket 115: bucket 94: 90% Sorting block time: 00:00:03 Returning block of 2859397 for bucket 88 Sorting block time: 00:00:03 Returning block of 1676353 for bucket 90 Getting block 115 of 209 Reserving size (4887258) for bucket 115 Calculating Z arrays for bucket 115 Entering block accumulator loop for bucket 115: bucket 103: 60% Getting block 116 of 209 Reserving size (4887258) for bucket 116 Calculating Z arrays for bucket 116 Entering block accumulator loop for bucket 116: bucket 102: 60% bucket 96: 100% Sorting block of length 3968347 for bucket 96 (Using difference cover) bucket 107: 50% bucket 111: 10% bucket 104: 80% bucket 108: 50% bucket 104: 60% bucket 95: 100% Sorting block of length 3558524 for bucket 95 (Using difference cover) bucket 96: 90% bucket 97: 90% bucket 108: 60% bucket 110: 20% bucket 99: 70% bucket 93: 100% Sorting block of length 4607478 for bucket 93 (Using difference cover) bucket 112: 10% bucket 105: 60% bucket 109: 40% bucket 112: 10% Sorting block time: 00:00:03 Returning block of 2577046 for bucket 94 bucket 98: 100% Sorting block of length 4427721 for bucket 98 (Using difference cover) bucket 97: 90% bucket 99: 100% Sorting block of length 2238031 for bucket 99 (Using difference cover) Getting block 116 of 196 Reserving size (4887258) for bucket 116 Calculating Z arrays for bucket 116 Entering block accumulator loop for bucket 116: Sorting block time: 00:00:03 Returning block of 3775646 for bucket 92 bucket 113: 10% bucket 110: 30% Getting block 117 of 196 Reserving size (4887258) for bucket 117 Calculating Z arrays for bucket 117 Entering block accumulator loop for bucket 117: bucket 100: 80% bucket 109: 30% bucket 106: 60% bucket 94: 100% Sorting block of length 3018727 for bucket 94 (Using difference cover) bucket 105: 80% bucket 102: 90% bucket 113: 10% bucket 114: 10% bucket 101: 100% Sorting block of length 4785042 for bucket 101 (Using difference cover) bucket 100: 100% Sorting block of length 4338106 for bucket 100 (Using difference cover) bucket 101: 70% bucket 103: 90% bucket 111: 20% bucket 106: 70% bucket 114: 10% bucket 98: 80% bucket 111: 20% bucket 95: 100% Sorting block of length 4859846 for bucket 95 (Using difference cover) bucket 107: 70% bucket 115: 10% bucket 115: 10% Sorting block time: 00:00:05 Returning block of 4638435 for bucket 90 Sorting block time: 00:00:04 Returning block of 4483972 for bucket 89 bucket 116: 10% Getting block 118 of 196 Reserving size (4887258) for bucket 118 Calculating Z arrays for bucket 118 Entering block accumulator loop for bucket 118: Getting block 117 of 209 Reserving size (4887258) for bucket 117 Calculating Z arrays for bucket 117 Entering block accumulator loop for bucket 117: bucket 104: 90% bucket 103: 70% bucket 107: 60% bucket 108: 60% bucket 104: 70% bucket 97: 100% Sorting block of length 2168767 for bucket 97 (Using difference cover) bucket 110: 30% bucket 102: 70% bucket 109: 50% bucket 96: 100% Sorting block of length 2990286 for bucket 96 (Using difference cover) bucket 108: 70% bucket 97: 100% Sorting block of length 3303230 for bucket 97 (Using difference cover) bucket 112: 20% bucket 112: 20% bucket 99: 80% bucket 106: 70% bucket 105: 70% bucket 110: 40% Sorting block time: 00:00:05 Returning block of 4460593 for bucket 91 bucket 113: 20% bucket 116: 10% bucket 109: 40% Getting block 119 of 196 Reserving size (4887258) for bucket 119 Calculating Z arrays for bucket 119 Entering block accumulator loop for bucket 119: bucket 105: 90% bucket 100: 90% Sorting block time: 00:00:05 Returning block of 4541882 for bucket 93 Sorting block time: 00:00:02 Returning block of 2238032 for bucket 99 bucket 116: 20% bucket 113: 20% bucket 114: 20% bucket 102: 100% Sorting block of length 4403728 for bucket 102 (Using difference cover) Getting block 120 of 196 Reserving size (4887258) for bucket 120 Calculating Z arrays for bucket 120 Entering block accumulator loop for bucket 120: bucket 111: 30% Getting block 121 of 196 Reserving size (4887258) for bucket 121 Calculating Z arrays for bucket 121 Entering block accumulator loop for bucket 121: bucket 103: 100% Sorting block of length 3015191 for bucket 103 (Using difference cover) bucket 111: 30% bucket 117: 10% Sorting block time: 00:00:03 Returning block of 2246066 for bucket 92 bucket 114: 20% bucket 106: 80% bucket 115: 20% Getting block 118 of 209 Reserving size (4887258) for bucket 118 Calculating Z arrays for bucket 118 Entering block accumulator loop for bucket 118: bucket 101: 80% bucket 104: 100% Sorting block of length 4193882 for bucket 104 (Using difference cover) bucket 115: 20% bucket 98: 90% bucket 110: 40% bucket 107: 80% Sorting block time: 00:00:07 Returning block of 7142538 for bucket 89 bucket 117: 10% bucket 105: 100% Sorting block of length 1642757 for bucket 105 (Using difference cover) Getting block 122 of 196 Reserving size (4887258) for bucket 122 Calculating Z arrays for bucket 122 Entering block accumulator loop for bucket 122: bucket 109: 60% bucket 112: 30% bucket 112: 30% bucket 108: 80% bucket 107: 70% bucket 104: 80% Sorting block time: 00:00:04 Returning block of 3968348 for bucket 96 bucket 118: 10% bucket 103: 80% Sorting block time: 00:00:04 Returning block of 3558525 for bucket 95 bucket 102: 80% bucket 110: 50% bucket 106: 80% bucket 99: 90% Getting block 123 of 196 Reserving size (4887258) for bucket 123 Calculating Z arrays for bucket 123 Entering block accumulator loop for bucket 123: Sorting block time: 00:00:02 Returning block of 2168768 for bucket 97 bucket 108: 70% Getting block 124 of 196 Reserving size (4887258) for bucket 124 Calculating Z arrays for bucket 124 Entering block accumulator loop for bucket 124: Sorting block time: 00:00:03 Returning block of 3018728 for bucket 94 Getting block 125 of 196 Reserving size (4887258) for bucket 125 Calculating Z arrays for bucket 125 Entering block accumulator loop for bucket 125: bucket 113: 30% bucket 100: 100% Sorting block of length 1694703 for bucket 100 (Using difference cover) Getting block 119 of 209 Reserving size (4887258) for bucket 119 Calculating Z arrays for bucket 119 Entering block accumulator loop for bucket 119: bucket 105: 80% bucket 106: 90% bucket 120: 10% bucket 116: 30% bucket 109: 50% bucket 114: 30% bucket 119: 10% bucket 116: 20% Sorting block time: 00:00:06 Returning block of 3795370 for bucket 91 bucket 111: 40% bucket 113: 30% bucket 111: 40% bucket 115: 30% Getting block 120 of 209 Reserving size (4887258) for bucket 120 Calculating Z arrays for bucket 120 Entering block accumulator loop for bucket 120: Sorting block time: 00:00:05 Returning block of 4607479 for bucket 93 bucket 114: 30% bucket 117: 20% bucket 121: 10% Getting block 121 of 209 Reserving size (4887258) for bucket 121 Calculating Z arrays for bucket 121 Entering block accumulator loop for bucket 121: bucket 118: 10% Sorting block time: 00:00:03 Returning block of 2990287 for bucket 96 bucket 117: 20% Sorting block time: 00:00:04 Returning block of 4338107 for bucket 100 bucket 101: 90% Getting block 122 of 209 Reserving size (4887258) for bucket 122 Calculating Z arrays for bucket 122 Entering block accumulator loop for bucket 122: Sorting block time: 00:00:04 Returning block of 4427722 for bucket 98 Sorting block time: 00:00:04 Returning block of 4785043 for bucket 101 bucket 115: 30% bucket 110: 50% Getting block 126 of 196 Reserving size (4887258) for bucket 126 Calculating Z arrays for bucket 126 Entering block accumulator loop for bucket 126: bucket 107: 90% bucket 98: 100% Sorting block of length 4197159 for bucket 98 (Using difference cover) Getting block 127 of 196 Reserving size (4887258) for bucket 127 Calculating Z arrays for bucket 127 Entering block accumulator loop for bucket 127: Getting block 128 of 196 Reserving size (4887258) for bucket 128 Calculating Z arrays for bucket 128 Entering block accumulator loop for bucket 128: Sorting block time: 00:00:02 Returning block of 1642758 for bucket 105 bucket 106: 100% Sorting block of length 4356243 for bucket 106 (Using difference cover) Getting block 129 of 196 Reserving size (4887258) for bucket 129 Calculating Z arrays for bucket 129 Entering block accumulator loop for bucket 129: Sorting block time: 00:00:04 Returning block of 3303231 for bucket 97 bucket 112: 40% bucket 106: 90% Sorting block time: 00:00:05 Returning block of 4859847 for bucket 95 bucket 109: 70% Getting block 123 of 209 Reserving size (4887258) for bucket 123 Calculating Z arrays for bucket 123 Entering block accumulator loop for bucket 123: bucket 122: 10% bucket 110: 60% bucket 112: 40% bucket 108: 90% Getting block 124 of 209 Reserving size (4887258) for bucket 124 Calculating Z arrays for bucket 124 Entering block accumulator loop for bucket 124: Sorting block time: 00:00:02 Returning block of 1694704 for bucket 100 Sorting block time: 00:00:03 Returning block of 3015192 for bucket 103 bucket 104: 90% Getting block 125 of 209 Reserving size (4887258) for bucket 125 Calculating Z arrays for bucket 125 Entering block accumulator loop for bucket 125: bucket 120: 20% Getting block 130 of 196 Reserving size (4887258) for bucket 130 Calculating Z arrays for bucket 130 Entering block accumulator loop for bucket 130: bucket 107: 80% bucket 119: 10% bucket 103: 90% bucket 99: 100% Sorting block of length 4558450 for bucket 99 (Using difference cover) bucket 113: 40% bucket 118: 20% bucket 102: 90% bucket 116: 40% bucket 108: 80% bucket 124: 10% bucket 114: 40% bucket 109: 60% bucket 111: 50% bucket 125: 10% bucket 116: 30% bucket 105: 90% bucket 119: 20% bucket 120: 10% bucket 123: 10% bucket 115: 40% bucket 111: 50% bucket 113: 40% bucket 114: 40% bucket 117: 30% bucket 121: 10% bucket 118: 20% bucket 121: 20% bucket 117: 30% bucket 110: 60% bucket 101: 100% Sorting block of length 4149203 for bucket 101 (Using difference cover) bucket 107: 100% Sorting block of length 2461928 for bucket 107 (Using difference cover) bucket 115: 40% bucket 122: 10% bucket 126: 10% bucket 127: 10% bucket 110: 70% bucket 128: 10% bucket 112: 50% Sorting block time: 00:00:05 Returning block of 4193883 for bucket 104 bucket 109: 80% bucket 123: 10% bucket 129: 10% bucket 112: 50% Getting block 131 of 196 Reserving size (4887258) for bucket 131 Calculating Z arrays for bucket 131 Entering block accumulator loop for bucket 131: bucket 124: 10% bucket 120: 30% Sorting block time: 00:00:05 Returning block of 4403729 for bucket 102 bucket 122: 20% bucket 106: 100% Sorting block of length 739684 for bucket 106 (Using difference cover) bucket 108: 100% Sorting block of length 4798294 for bucket 108 (Using difference cover) bucket 125: 20% bucket 119: 20% bucket 125: 10% Getting block 132 of 196 Reserving size (4887258) for bucket 132 Calculating Z arrays for bucket 132 Entering block accumulator loop for bucket 132: bucket 116: 50% bucket 113: 50% bucket 104: 100% Sorting block of length 1806743 for bucket 104 (Using difference cover) bucket 130: 10% bucket 114: 50% bucket 111: 60% bucket 114: 50% bucket 118: 30% bucket 103: 100% Sorting block of length 4730091 for bucket 103 (Using difference cover) bucket 107: 90% bucket 102: 100% Sorting block of length 3261625 for bucket 102 (Using difference cover) bucket 109: 70% bucket 120: 20% bucket 115: 50% bucket 111: 60% bucket 108: 90% bucket 119: 30% bucket 123: 20% bucket 113: 50% bucket 116: 40% bucket 105: 100% Sorting block of length 4183650 for bucket 105 (Using difference cover) bucket 124: 20% bucket 121: 20% bucket 117: 40% bucket 118: 30% Sorting block time: 00:00:01 Returning block of 739685 for bucket 106 Getting block 126 of 209 Reserving size (4887258) for bucket 126 Calculating Z arrays for bucket 126 Entering block accumulator loop for bucket 126: bucket 110: 80% bucket 117: 40% bucket 110: 70% bucket 121: 30% bucket 115: 50% bucket 112: 60% bucket 122: 20% Sorting block time: 00:00:04 Returning block of 4197160 for bucket 98 bucket 126: 20% bucket 109: 90% bucket 128: 20% Getting block 127 of 209 Reserving size (4887258) for bucket 127 Calculating Z arrays for bucket 127 Entering block accumulator loop for bucket 127: bucket 127: 20% bucket 114: 60% Sorting block time: 00:00:03 Returning block of 4356244 for bucket 106 bucket 112: 60% Sorting block time: 00:00:02 Returning block of 2461929 for bucket 107 bucket 123: 20% bucket 124: 20% bucket 130: 20% bucket 119: 30% Getting block 133 of 196 Reserving size (4887258) for bucket 133 Calculating Z arrays for bucket 133 Entering block accumulator loop for bucket 133: bucket 131: 10% bucket 116: 60% Getting block 134 of 196 Reserving size (4887258) for bucket 134 Calculating Z arrays for bucket 134 Entering block accumulator loop for bucket 134: bucket 113: 60% Sorting block time: 00:00:02 Returning block of 1806744 for bucket 104 bucket 120: 40% bucket 122: 30% bucket 125: 20% bucket 129: 20% Getting block 128 of 209 Reserving size (4887258) for bucket 128 Calculating Z arrays for bucket 128 Entering block accumulator loop for bucket 128: bucket 114: 60% bucket 132: 10% bucket 125: 30% bucket 111: 70% bucket 120: 30% bucket 115: 60% bucket 109: 80% bucket 111: 70% bucket 113: 60% bucket 118: 40% bucket 107: 100% Sorting block of length 4654669 for bucket 107 (Using difference cover) bucket 117: 50% bucket 119: 40% Sorting block time: 00:00:04 Returning block of 4558451 for bucket 99 bucket 118: 40% bucket 116: 50% bucket 112: 70% bucket 121: 30% bucket 123: 30% Getting block 129 of 209 Reserving size (4887258) for bucket 129 Calculating Z arrays for bucket 129 Entering block accumulator loop for bucket 129: bucket 108: 100% Sorting block of length 4683255 for bucket 108 (Using difference cover) bucket 126: 10% bucket 110: 90% bucket 124: 30% bucket 110: 80% bucket 117: 50% bucket 121: 40% bucket 122: 40% bucket 122: 30% bucket 109: 100% Sorting block of length 1540919 for bucket 109 (Using difference cover) bucket 115: 60% bucket 128: 30% bucket 114: 70% bucket 127: 10% bucket 126: 30% bucket 112: 70% bucket 123: 30% bucket 119: 40% bucket 124: 30% bucket 127: 30% bucket 116: 70% Sorting block time: 00:00:04 Returning block of 4149204 for bucket 101 bucket 111: 80% bucket 128: 10% bucket 113: 70% bucket 130: 30% bucket 125: 30% bucket 131: 20% bucket 114: 70% bucket 120: 50% Sorting block time: 00:00:03 Returning block of 3261626 for bucket 102 Getting block 130 of 209 Reserving size (4887258) for bucket 130 Calculating Z arrays for bucket 130 Entering block accumulator loop for bucket 130: bucket 115: 70% bucket 133: 10% bucket 134: 10% bucket 120: 40% bucket 129: 30% Getting block 131 of 209 Reserving size (4887258) for bucket 131 Calculating Z arrays for bucket 131 Entering block accumulator loop for bucket 131: bucket 118: 50% bucket 132: 20% bucket 125: 40% bucket 113: 70% bucket 109: 90% bucket 111: 80% bucket 117: 60% bucket 112: 80% Sorting block time: 00:00:01 Returning block of 1540920 for bucket 109 bucket 129: 10% bucket 121: 40% bucket 119: 50% Getting block 132 of 209 Reserving size (4887258) for bucket 132 Calculating Z arrays for bucket 132 Entering block accumulator loop for bucket 132: bucket 110: 100% Sorting block of length 4228650 for bucket 110 (Using difference cover) bucket 118: 50% bucket 116: 60% Sorting block time: 00:00:04 Returning block of 4798295 for bucket 108 Sorting block time: 00:00:04 Returning block of 4730092 for bucket 103 bucket 126: 20% Sorting block time: 00:00:04 Returning block of 4183651 for bucket 105 bucket 123: 40% bucket 110: 90% bucket 122: 50% bucket 124: 40% Getting block 135 of 196 Reserving size (4887258) for bucket 135 Calculating Z arrays for bucket 135 Entering block accumulator loop for bucket 135: bucket 117: 60% Getting block 133 of 209 Reserving size (4887258) for bucket 133 Calculating Z arrays for bucket 133 Entering block accumulator loop for bucket 133: Getting block 134 of 209 Reserving size (4887258) for bucket 134 Calculating Z arrays for bucket 134 Entering block accumulator loop for bucket 134: bucket 122: 40% bucket 127: 20% bucket 121: 50% bucket 134: 20% bucket 119: 50% bucket 111: 90% bucket 115: 80% bucket 114: 80% bucket 120: 60% bucket 123: 40% bucket 128: 40% bucket 124: 40% bucket 116: 80% bucket 112: 80% bucket 115: 70% bucket 128: 20% bucket 130: 10% bucket 114: 80% bucket 126: 40% bucket 113: 80% bucket 125: 40% bucket 120: 50% bucket 118: 60% bucket 127: 40% bucket 131: 30% bucket 130: 40% bucket 131: 10% bucket 133: 20% bucket 132: 30% bucket 129: 40% bucket 113: 80% bucket 117: 70% bucket 111: 90% bucket 109: 100% Sorting block of length 2856228 for bucket 109 (Using difference cover) bucket 129: 20% bucket 125: 50% bucket 112: 90% bucket 132: 10% bucket 121: 50% bucket 130: 20% bucket 127: 30% bucket 119: 60% bucket 118: 60% bucket 116: 70% bucket 126: 30% bucket 133: 10% bucket 134: 10% bucket 110: 100% Sorting block of length 4314971 for bucket 110 (Using difference cover) bucket 114: 90% bucket 122: 60% bucket 128: 30% bucket 135: 10% bucket 119: 60% bucket 123: 50% bucket 117: 70% bucket 111: 100% Sorting block of length 1086519 for bucket 111 (Using difference cover) bucket 115: 90% bucket 120: 70% bucket 121: 60% bucket 122: 50% bucket 123: 50% bucket 134: 30% bucket 124: 50% bucket 112: 90% bucket 124: 50% bucket 116: 90% bucket 130: 50% bucket 128: 50% bucket 115: 80% bucket 118: 70% bucket 120: 60% Sorting block time: 00:00:05 Returning block of 4654670 for bucket 107 bucket 114: 90% bucket 125: 50% bucket 113: 90% bucket 126: 50% Sorting block time: 00:00:04 Returning block of 4683256 for bucket 108 Getting block 135 of 209 Reserving size (4887258) for bucket 135 Calculating Z arrays for bucket 135 Entering block accumulator loop for bucket 135: bucket 131: 40% bucket 131: 20% Getting block 136 of 209 Reserving size (4887258) for bucket 136 Calculating Z arrays for bucket 136 Entering block accumulator loop for bucket 136: bucket 113: 90% bucket 127: 50% bucket 129: 30% bucket 117: 80% bucket 132: 40% bucket 112: 100% Sorting block of length 4616103 for bucket 112 (Using difference cover) bucket 111: 100% Sorting block of length 1812533 for bucket 111 (Using difference cover) bucket 129: 50% bucket 130: 30% Sorting block time: 00:00:01 Returning block of 1086520 for bucket 111 Getting block 137 of 209 Reserving size (4887258) for bucket 137 Calculating Z arrays for bucket 137 Entering block accumulator loop for bucket 137: bucket 127: 40% bucket 132: 20% bucket 125: 60% bucket 121: 60% bucket 133: 30% bucket 119: 70% bucket 133: 20% bucket 134: 20% Sorting block time: 00:00:04 Returning block of 4228651 for bucket 110 bucket 116: 80% bucket 128: 40% bucket 126: 40% bucket 114: 100% Sorting block of length 4801695 for bucket 114 (Using difference cover) bucket 130: 60% bucket 119: 70% Getting block 138 of 209 Reserving size (4887258) for bucket 138 Calculating Z arrays for bucket 138 Entering block accumulator loop for bucket 138: bucket 115: 100% Sorting block of length 2960144 for bucket 115 (Using difference cover) bucket 118: 70% bucket 114: 100% Sorting block of length 4118934 for bucket 114 (Using difference cover) bucket 122: 70% bucket 135: 20% bucket 124: 60% bucket 123: 60% bucket 117: 80% bucket 112: 100% Sorting block of length 4103567 for bucket 112 (Using difference cover) bucket 118: 80% bucket 122: 60% bucket 120: 80% bucket 123: 60% bucket 121: 70% bucket 120: 70% bucket 128: 60% Sorting block time: 00:00:03 Returning block of 2856229 for bucket 109 bucket 115: 90% bucket 134: 40% bucket 116: 100% Sorting block of length 2456628 for bucket 116 (Using difference cover) bucket 124: 60% bucket 125: 60% bucket 132: 50% bucket 113: 100% Sorting block of length 3541396 for bucket 113 (Using difference cover) bucket 135: 10% bucket 131: 30% bucket 126: 60% bucket 113: 100% Sorting block of length 3723806 for bucket 113 (Using difference cover) bucket 131: 50% bucket 129: 40% bucket 130: 40% bucket 136: 10% bucket 128: 50% bucket 117: 90% bucket 127: 50% bucket 132: 30% bucket 137: 10% bucket 129: 60% bucket 127: 60% Sorting block time: 00:00:02 Returning block of 1812534 for bucket 111 Getting block 136 of 196 Reserving size (4887258) for bucket 136 Calculating Z arrays for bucket 136 Entering block accumulator loop for bucket 136: bucket 128: 70% Getting block 137 of 196 Reserving size (4887258) for bucket 137 Calculating Z arrays for bucket 137 Entering block accumulator loop for bucket 137: bucket 121: 70% bucket 133: 30% bucket 134: 30% bucket 125: 70% bucket 133: 40% bucket 119: 80% bucket 118: 90% bucket 116: 90% bucket 119: 80% bucket 126: 50% bucket 138: 10% bucket 135: 30% bucket 130: 70% Sorting block time: 00:00:04 Returning block of 4314972 for bucket 110 bucket 124: 70% bucket 122: 80% bucket 123: 70% bucket 128: 60% bucket 120: 80% bucket 122: 70% bucket 118: 80% Getting block 138 of 196 Reserving size (4887258) for bucket 138 Calculating Z arrays for bucket 138 Entering block accumulator loop for bucket 138: bucket 120: 90% bucket 115: 100% Sorting block of length 1636136 for bucket 115 (Using difference cover) bucket 117: 90% bucket 123: 70% bucket 121: 80% bucket 125: 70% bucket 132: 60% bucket 134: 50% bucket 135: 20% bucket 129: 50% bucket 131: 40% bucket 124: 70% bucket 130: 50% bucket 131: 60% Sorting block time: 00:00:02 Returning block of 2456629 for bucket 116 bucket 127: 60% bucket 117: 100% Sorting block of length 4035357 for bucket 117 (Using difference cover) bucket 126: 70% bucket 132: 40% bucket 136: 20% bucket 134: 40% Getting block 139 of 209 Reserving size (4887258) for bucket 139 Calculating Z arrays for bucket 139 Entering block accumulator loop for bucket 139: bucket 137: 20% Sorting block time: 00:00:03 Returning block of 2960145 for bucket 115 Getting block 140 of 209 Reserving size (4887258) for bucket 140 Calculating Z arrays for bucket 140 Entering block accumulator loop for bucket 140: bucket 127: 70% bucket 136: 10% bucket 129: 70% bucket 133: 40% bucket 121: 80% bucket 131: 50% bucket 128: 80% bucket 118: 100% Sorting block of length 2088695 for bucket 118 (Using difference cover) bucket 119: 90% bucket 123: 80% Sorting block time: 00:00:05 Returning block of 4616104 for bucket 112 bucket 138: 20% bucket 137: 10% bucket 126: 60% bucket 125: 80% bucket 116: 100% Sorting block of length 4746528 for bucket 116 (Using difference cover) bucket 135: 40% Getting block 141 of 209 Reserving size (4887258) for bucket 141 Calculating Z arrays for bucket 141 Entering block accumulator loop for bucket 141: bucket 133: 50% bucket 132: 70% bucket 128: 70% bucket 119: 90% bucket 130: 80% bucket 120: 90% bucket 124: 80% Sorting block time: 00:00:02 Returning block of 1636137 for bucket 115 bucket 122: 90% bucket 138: 10% bucket 135: 30% Getting block 139 of 196 Reserving size (4887258) for bucket 139 Calculating Z arrays for bucket 139 Entering block accumulator loop for bucket 139: Sorting block time: 00:00:04 Returning block of 4118935 for bucket 114 bucket 122: 80% bucket 129: 60% bucket 120: 100% Sorting block of length 4388378 for bucket 120 (Using difference cover) bucket 125: 80% bucket 130: 60% bucket 118: 90% Getting block 142 of 209 Reserving size (4887258) for bucket 142 Calculating Z arrays for bucket 142 Entering block accumulator loop for bucket 142: bucket 117: 100% Sorting block of length 3861495 for bucket 117 (Using difference cover) bucket 127: 70% bucket 123: 80% bucket 134: 60% bucket 121: 90% bucket 132: 50% Sorting block time: 00:00:05 Returning block of 4103568 for bucket 112 bucket 134: 50% bucket 137: 30% Sorting block time: 00:00:04 Returning block of 3723807 for bucket 113 bucket 131: 70% bucket 136: 30% bucket 124: 80% Getting block 143 of 209 Reserving size (4887258) for bucket 143 Calculating Z arrays for bucket 143 Entering block accumulator loop for bucket 143: Getting block 140 of 196 Reserving size (4887258) for bucket 140 Calculating Z arrays for bucket 140 Entering block accumulator loop for bucket 140: bucket 126: 80% bucket 139: 10% bucket 140: 10% bucket 131: 60% bucket 133: 50% bucket 119: 100% Sorting block of length 4646690 for bucket 119 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4801696 for bucket 114 bucket 121: 90% bucket 136: 20% bucket 129: 80% bucket 123: 90% bucket 127: 80% bucket 128: 90% Getting block 141 of 196 Reserving size (4887258) for bucket 141 Calculating Z arrays for bucket 141 Entering block accumulator loop for bucket 141: bucket 138: 30% bucket 135: 50% Sorting block time: 00:00:02 Returning block of 2088696 for bucket 118 Getting block 144 of 209 Reserving size (4887258) for bucket 144 Calculating Z arrays for bucket 144 Entering block accumulator loop for bucket 144: bucket 126: 70% bucket 141: 10% bucket 120: 100% Sorting block of length 2700530 for bucket 120 (Using difference cover) bucket 128: 80% bucket 137: 20% bucket 122: 90% bucket 125: 90% bucket 137: 40% bucket 124: 90% bucket 138: 20% bucket 132: 80% bucket 119: 100% Sorting block of length 2691737 for bucket 119 (Using difference cover) bucket 130: 90% bucket 129: 70% bucket 135: 40% bucket 133: 60% bucket 122: 100% Sorting block of length 4824975 for bucket 122 (Using difference cover) bucket 130: 70% bucket 140: 20% bucket 142: 10% bucket 125: 90% bucket 127: 80% bucket 132: 60% Sorting block time: 00:00:05 Returning block of 3541397 for bucket 113 bucket 134: 60% bucket 139: 10% Getting block 142 of 196 Reserving size (4887258) for bucket 142 Calculating Z arrays for bucket 142 Entering block accumulator loop for bucket 142: bucket 121: 100% Sorting block of length 4391300 for bucket 121 (Using difference cover) bucket 118: 100% Sorting block of length 4548976 for bucket 118 (Using difference cover) bucket 134: 70% bucket 131: 80% bucket 123: 90% bucket 143: 10% bucket 136: 40% bucket 131: 70% bucket 126: 90% bucket 139: 20% bucket 133: 60% bucket 123: 100% Sorting block of length 4021358 for bucket 123 (Using difference cover) bucket 140: 10% bucket 124: 90% bucket 121: 100% Sorting block of length 4577431 for bucket 121 (Using difference cover) bucket 125: 100% Sorting block of length 4356979 for bucket 125 (Using difference cover) bucket 129: 90% Sorting block time: 00:00:04 Returning block of 4035358 for bucket 117 bucket 136: 30% bucket 128: 90% bucket 138: 40% bucket 128: 100% Sorting block of length 4813723 for bucket 128 (Using difference cover) bucket 125: 100% Sorting block of length 4358956 for bucket 125 (Using difference cover) bucket 135: 60% bucket 127: 90% bucket 126: 80% bucket 141: 20% bucket 141: 10% Getting block 145 of 209 Reserving size (4887258) for bucket 145 Calculating Z arrays for bucket 145 Entering block accumulator loop for bucket 145: bucket 144: 10% bucket 137: 50% bucket 129: 80% bucket 130: 80% bucket 140: 30% bucket 122: 100% Sorting block of length 3380675 for bucket 122 (Using difference cover) bucket 124: 100% Sorting block of length 1160370 for bucket 124 (Using difference cover) bucket 135: 50% bucket 137: 30% bucket 138: 30% bucket 132: 90% Sorting block time: 00:00:02 Returning block of 2700531 for bucket 120 bucket 130: 100% Sorting block of length 3857437 for bucket 130 (Using difference cover) bucket 127: 90% bucket 142: 20% bucket 132: 70% Getting block 146 of 209 Reserving size (4887258) for bucket 146 Calculating Z arrays for bucket 146 Entering block accumulator loop for bucket 146: bucket 134: 70% bucket 133: 70% Sorting block time: 00:00:04 Returning block of 3861496 for bucket 117 bucket 139: 20% bucket 142: 10% bucket 134: 80% Getting block 143 of 196 Reserving size (4887258) for bucket 143 Calculating Z arrays for bucket 143 Entering block accumulator loop for bucket 143: Sorting block time: 00:00:04 Returning block of 4746529 for bucket 116 bucket 133: 70% bucket 131: 80% bucket 136: 50% bucket 131: 90% bucket 143: 20% bucket 126: 100% Sorting block of length 3017665 for bucket 126 (Using difference cover) Sorting block time: 00:00:03 Returning block of 2691738 for bucket 119 bucket 123: 100% Sorting block of length 3919559 for bucket 123 (Using difference cover) Getting block 144 of 196 Reserving size (4887258) for bucket 144 Calculating Z arrays for bucket 144 Entering block accumulator loop for bucket 144: bucket 129: 100% Sorting block of length 4775341 for bucket 129 (Using difference cover) bucket 139: 30% bucket 145: 10% Getting block 145 of 196 Reserving size (4887258) for bucket 145 Calculating Z arrays for bucket 145 Entering block accumulator loop for bucket 145: bucket 140: 20% bucket 124: 100% Sorting block of length 3973491 for bucket 124 (Using difference cover) bucket 137: 60% bucket 128: 100% Sorting block of length 4550291 for bucket 128 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4388379 for bucket 120 Sorting block time: 00:00:04 Returning block of 4646691 for bucket 119 bucket 130: 90% bucket 138: 40% bucket 138: 50% Sorting block time: 00:00:01 Returning block of 1160371 for bucket 124 bucket 141: 30% Getting block 146 of 196 Reserving size (4887258) for bucket 146 Calculating Z arrays for bucket 146 Entering block accumulator loop for bucket 146: Getting block 147 of 209 Reserving size (4887258) for bucket 147 Calculating Z arrays for bucket 147 Entering block accumulator loop for bucket 147: bucket 126: 90% bucket 141: 20% Getting block 148 of 209 Reserving size (4887258) for bucket 148 Calculating Z arrays for bucket 148 Entering block accumulator loop for bucket 148: bucket 136: 40% bucket 135: 70% bucket 129: 90% bucket 127: 100% Sorting block of length 2197438 for bucket 127 (Using difference cover) bucket 144: 20% bucket 140: 40% bucket 127: 100% Sorting block of length 3317120 for bucket 127 (Using difference cover) bucket 135: 60% bucket 142: 30% bucket 132: 80% bucket 137: 40% bucket 132: 100% Sorting block of length 4531976 for bucket 132 (Using difference cover) bucket 134: 80% bucket 146: 10% bucket 133: 80% bucket 137: 70% bucket 133: 80% bucket 131: 90% bucket 143: 10% bucket 139: 30% bucket 134: 90% bucket 136: 60% bucket 142: 20% bucket 143: 30% bucket 131: 100% Sorting block of length 1605728 for bucket 131 (Using difference cover) bucket 135: 70% bucket 139: 40% bucket 130: 100% Sorting block of length 3222185 for bucket 130 (Using difference cover) bucket 144: 10% bucket 138: 50% bucket 145: 20% bucket 145: 10% Sorting block time: 00:00:05 Returning block of 4548977 for bucket 118 Sorting block time: 00:00:04 Returning block of 4021359 for bucket 123 bucket 138: 60% Sorting block time: 00:00:04 Returning block of 4577432 for bucket 121 bucket 140: 30% bucket 129: 100% Sorting block of length 4227852 for bucket 129 (Using difference cover) bucket 141: 40% bucket 126: 100% Sorting block of length 4593187 for bucket 126 (Using difference cover) Getting block 149 of 209 Reserving size (4887258) for bucket 149 Calculating Z arrays for bucket 149 Entering block accumulator loop for bucket 149: Getting block 147 of 196 Reserving size (4887258) for bucket 147 Calculating Z arrays for bucket 147 Entering block accumulator loop for bucket 147: bucket 148: 10% bucket 141: 30% bucket 146: 10% Getting block 150 of 209 Reserving size (4887258) for bucket 150 Calculating Z arrays for bucket 150 Entering block accumulator loop for bucket 150: Sorting block time: 00:00:03 Returning block of 3380676 for bucket 122 bucket 140: 50% bucket 144: 30% bucket 135: 80% Sorting block time: 00:00:04 Returning block of 4356980 for bucket 125 bucket 136: 50% bucket 147: 10% Sorting block time: 00:00:05 Returning block of 4391301 for bucket 121 Sorting block time: 00:00:04 Returning block of 4813724 for bucket 128 Getting block 151 of 209 Reserving size (4887258) for bucket 151 Calculating Z arrays for bucket 151 Entering block accumulator loop for bucket 151: bucket 137: 50% bucket 132: 90% bucket 142: 40% Getting block 152 of 209 Reserving size (4887258) for bucket 152 Calculating Z arrays for bucket 152 Entering block accumulator loop for bucket 152: bucket 134: 90% Getting block 148 of 196 Reserving size (4887258) for bucket 148 Calculating Z arrays for bucket 148 Entering block accumulator loop for bucket 148: Getting block 149 of 196 Reserving size (4887258) for bucket 149 Calculating Z arrays for bucket 149 Entering block accumulator loop for bucket 149: Sorting block time: 00:00:05 Returning block of 4824976 for bucket 122 Sorting block time: 00:00:03 Returning block of 3857438 for bucket 130 Sorting block time: 00:00:02 Returning block of 3017666 for bucket 126 Sorting block time: 00:00:02 Returning block of 2197439 for bucket 127 Getting block 150 of 196 Reserving size (4887258) for bucket 150 Calculating Z arrays for bucket 150 Entering block accumulator loop for bucket 150: bucket 146: 20% Getting block 151 of 196 Reserving size (4887258) for bucket 151 Calculating Z arrays for bucket 151 Entering block accumulator loop for bucket 151: Getting block 152 of 196 Reserving size (4887258) for bucket 152 Calculating Z arrays for bucket 152 Entering block accumulator loop for bucket 152: Getting block 153 of 196 Reserving size (4887258) for bucket 153 Calculating Z arrays for bucket 153 Entering block accumulator loop for bucket 153: bucket 133: 90% bucket 131: 100% Sorting block of length 4729983 for bucket 131 (Using difference cover) bucket 137: 80% Sorting block time: 00:00:02 Returning block of 1605729 for bucket 131 Sorting block time: 00:00:05 Returning block of 4358957 for bucket 125 Getting block 154 of 196 Reserving size (4887258) for bucket 154 Calculating Z arrays for bucket 154 Entering block accumulator loop for bucket 154: bucket 143: 20% Getting block 155 of 196 Reserving size (4887258) for bucket 155 Calculating Z arrays for bucket 155 Entering block accumulator loop for bucket 155: bucket 135: 80% bucket 136: 70% bucket 143: 40% bucket 134: 100% Sorting block of length 4685421 for bucket 134 (Using difference cover) bucket 139: 40% bucket 133: 90% bucket 149: 10% bucket 142: 30% bucket 139: 50% Sorting block time: 00:00:03 Returning block of 3317121 for bucket 127 bucket 138: 60% bucket 145: 30% bucket 138: 70% bucket 144: 20% Getting block 153 of 209 Reserving size (4887258) for bucket 153 Calculating Z arrays for bucket 153 Entering block accumulator loop for bucket 153: bucket 141: 50% bucket 145: 20% bucket 132: 100% Sorting block of length 2946430 for bucket 132 (Using difference cover) bucket 141: 40% bucket 148: 20% Sorting block time: 00:00:04 Returning block of 3919560 for bucket 123 bucket 140: 40% bucket 140: 60% bucket 147: 10% bucket 146: 20% Sorting block time: 00:00:04 Returning block of 4550292 for bucket 128 bucket 144: 40% Getting block 156 of 196 Reserving size (4887258) for bucket 156 Calculating Z arrays for bucket 156 Entering block accumulator loop for bucket 156: bucket 136: 60% bucket 147: 20% bucket 134: 100% Sorting block of length 1530516 for bucket 134 (Using difference cover) bucket 135: 90% bucket 151: 10% bucket 137: 60% Getting block 154 of 209 Reserving size (4887258) for bucket 154 Calculating Z arrays for bucket 154 Entering block accumulator loop for bucket 154: Sorting block time: 00:00:03 Returning block of 3222186 for bucket 130 bucket 152: 10% Getting block 155 of 209 Reserving size (4887258) for bucket 155 Calculating Z arrays for bucket 155 Entering block accumulator loop for bucket 155: bucket 150: 10% bucket 149: 10% bucket 142: 50% bucket 148: 10% Sorting block time: 00:00:04 Returning block of 4775342 for bucket 129 bucket 133: 100% Sorting block of length 4416674 for bucket 133 (Using difference cover) bucket 146: 30% bucket 151: 10% bucket 150: 10% Sorting block time: 00:00:03 Returning block of 4531977 for bucket 132 bucket 152: 10% bucket 149: 20% Getting block 157 of 196 Reserving size (4887258) for bucket 157 Calculating Z arrays for bucket 157 Entering block accumulator loop for bucket 157: bucket 153: 10% Sorting block time: 00:00:05 Returning block of 3973492 for bucket 124 bucket 137: 90% Getting block 158 of 196 Reserving size (4887258) for bucket 158 Calculating Z arrays for bucket 158 Entering block accumulator loop for bucket 158: Getting block 159 of 196 Reserving size (4887258) for bucket 159 Calculating Z arrays for bucket 159 Entering block accumulator loop for bucket 159: Sorting block time: 00:00:01 Returning block of 2946431 for bucket 132 bucket 143: 30% bucket 154: 10% bucket 135: 90% bucket 155: 10% Getting block 156 of 209 Reserving size (4887258) for bucket 156 Calculating Z arrays for bucket 156 Entering block accumulator loop for bucket 156: bucket 136: 80% bucket 143: 50% bucket 139: 50% bucket 133: 100% Sorting block of length 4849415 for bucket 133 (Using difference cover) bucket 139: 60% bucket 141: 60% Sorting block time: 00:00:01 Returning block of 1530517 for bucket 134 bucket 138: 80% Getting block 157 of 209 Reserving size (4887258) for bucket 157 Calculating Z arrays for bucket 157 bucket 142: 40% Entering block accumulator loop for bucket 157: bucket 145: 40% bucket 153: 10% bucket 138: 70% bucket 148: 30% Sorting block time: 00:00:03 Returning block of 4227853 for bucket 129 bucket 144: 30% bucket 145: 30% bucket 140: 70% bucket 141: 50% bucket 149: 20% bucket 144: 50% bucket 146: 30% Getting block 158 of 209 Reserving size (4887258) for bucket 158 Calculating Z arrays for bucket 158 Entering block accumulator loop for bucket 158: bucket 147: 20% bucket 140: 50% bucket 151: 20% bucket 147: 30% bucket 136: 70% bucket 135: 100% Sorting block of length 3979568 for bucket 135 (Using difference cover) bucket 152: 20% bucket 154: 10% bucket 156: 10% bucket 151: 20% bucket 142: 60% bucket 137: 70% bucket 155: 10% bucket 135: 100% Sorting block of length 3671533 for bucket 135 (Using difference cover) bucket 148: 20% bucket 146: 40% Sorting block time: 00:00:04 Returning block of 4593188 for bucket 126 bucket 149: 30% bucket 150: 20% bucket 137: 100% Sorting block of length 4492393 for bucket 137 (Using difference cover) bucket 150: 20% Getting block 159 of 209 Reserving size (4887258) for bucket 159 Calculating Z arrays for bucket 159 Entering block accumulator loop for bucket 159: bucket 152: 20% Sorting block time: 00:00:03 Returning block of 4729984 for bucket 131 bucket 157: 10% bucket 153: 20% bucket 158: 10% Getting block 160 of 209 Reserving size (4887258) for bucket 160 Calculating Z arrays for bucket 160 Entering block accumulator loop for bucket 160: bucket 142: 50% bucket 143: 40% bucket 159: 10% bucket 156: 10% bucket 138: 80% bucket 136: 90% bucket 155: 20% bucket 154: 20% bucket 141: 70% bucket 143: 60% bucket 138: 90% bucket 139: 60% bucket 153: 20% bucket 145: 50% bucket 148: 40% bucket 151: 30% bucket 140: 80% bucket 139: 70% bucket 144: 60% bucket 142: 70% bucket 154: 20% bucket 149: 30% bucket 158: 10% bucket 141: 60% bucket 144: 40% bucket 146: 40% bucket 157: 10% bucket 152: 30% bucket 147: 30% bucket 145: 40% bucket 147: 40% bucket 136: 80% bucket 151: 30% bucket 148: 30% bucket 140: 60% bucket 156: 20% Sorting block time: 00:00:05 Returning block of 4685422 for bucket 134 bucket 155: 20% Sorting block time: 00:00:04 Returning block of 4416675 for bucket 133 Getting block 160 of 196 Reserving size (4887258) for bucket 160 Calculating Z arrays for bucket 160 Entering block accumulator loop for bucket 160: bucket 137: 80% bucket 146: 50% bucket 158: 20% bucket 149: 40% Getting block 161 of 209 Reserving size (4887258) for bucket 161 Calculating Z arrays for bucket 161 Entering block accumulator loop for bucket 161: bucket 150: 30% bucket 142: 60% bucket 153: 30% bucket 159: 10% bucket 157: 20% bucket 138: 90% bucket 156: 20% bucket 152: 30% bucket 150: 30% bucket 149: 40% bucket 143: 50% bucket 138: 100% Sorting block of length 2179432 for bucket 138 (Using difference cover) bucket 141: 80% bucket 154: 30% bucket 154: 30% bucket 136: 100% Sorting block of length 4580564 for bucket 136 (Using difference cover) Sorting block time: 00:00:03 Returning block of 3671534 for bucket 135 bucket 160: 10% bucket 155: 30% bucket 143: 70% bucket 159: 20% Getting block 162 of 209 Reserving size (4887258) for bucket 162 Calculating Z arrays for bucket 162 Entering block accumulator loop for bucket 162: bucket 142: 80% bucket 153: 30% bucket 151: 40% bucket 140: 90% bucket 148: 50% bucket 145: 60% bucket 144: 50% bucket 139: 80% bucket 144: 70% bucket 139: 70% bucket 158: 20% Sorting block time: 00:00:03 Returning block of 3979569 for bucket 135 bucket 146: 50% bucket 152: 40% bucket 141: 70% Getting block 161 of 196 Reserving size (4887258) for bucket 161 Calculating Z arrays for bucket 161 Entering block accumulator loop for bucket 161: bucket 147: 40% bucket 136: 90% bucket 148: 40% bucket 147: 50% bucket 145: 50% bucket 157: 20% bucket 160: 10% bucket 151: 40% bucket 155: 30% bucket 156: 30% Sorting block time: 00:00:04 Returning block of 4492394 for bucket 137 Sorting block time: 00:00:05 Returning block of 4849416 for bucket 133 bucket 140: 70% bucket 138: 100% Sorting block of length 3941794 for bucket 138 (Using difference cover) bucket 149: 50% bucket 158: 30% bucket 146: 60% bucket 150: 40% bucket 137: 90% Getting block 163 of 209 Reserving size (4887258) for bucket 163 Calculating Z arrays for bucket 163 Entering block accumulator loop for bucket 163: bucket 159: 20% bucket 161: 10% Getting block 162 of 196 Reserving size (4887258) for bucket 162 Calculating Z arrays for bucket 162 Entering block accumulator loop for bucket 162: bucket 142: 70% bucket 140: 100% Sorting block of length 1816743 for bucket 140 (Using difference cover) bucket 162: 10% bucket 153: 40% bucket 151: 50% bucket 156: 30% bucket 154: 40% bucket 157: 30% bucket 141: 90% bucket 149: 50% bucket 143: 60% bucket 154: 40% bucket 142: 90% bucket 155: 40% Sorting block time: 00:00:02 Returning block of 2179433 for bucket 138 bucket 152: 40% bucket 152: 50% bucket 143: 80% Getting block 164 of 209 Reserving size (4887258) for bucket 164 Calculating Z arrays for bucket 164 Entering block accumulator loop for bucket 164: bucket 160: 20% bucket 148: 60% bucket 150: 40% bucket 159: 30% bucket 153: 40% bucket 145: 70% bucket 160: 20% bucket 144: 60% bucket 158: 30% bucket 144: 80% bucket 139: 90% bucket 146: 60% bucket 141: 80% bucket 139: 80% bucket 149: 60% bucket 161: 10% bucket 148: 50% bucket 136: 100% Sorting block of length 4337190 for bucket 136 (Using difference cover) bucket 147: 60% Sorting block time: 00:00:01 Returning block of 1816744 for bucket 140 bucket 151: 50% bucket 155: 40% bucket 147: 50% bucket 145: 60% Getting block 165 of 209 Reserving size (4887258) for bucket 165 Calculating Z arrays for bucket 165 Entering block accumulator loop for bucket 165: bucket 156: 40% bucket 157: 30% bucket 141: 100% Sorting block of length 4595882 for bucket 141 (Using difference cover) bucket 158: 40% bucket 150: 50% bucket 159: 30% bucket 146: 70% bucket 164: 10% bucket 163: 10% bucket 154: 50% bucket 140: 80% bucket 153: 50% bucket 162: 20% bucket 155: 50% bucket 162: 10% bucket 151: 60% bucket 161: 20% bucket 156: 40% bucket 152: 60% bucket 137: 100% Sorting block of length 4762070 for bucket 137 (Using difference cover) bucket 149: 60% bucket 142: 100% Sorting block of length 2325015 for bucket 142 (Using difference cover) bucket 142: 80% bucket 154: 50% bucket 157: 40% bucket 143: 70% bucket 160: 30% bucket 143: 90% bucket 148: 70% bucket 144: 70% bucket 141: 90% bucket 152: 50% bucket 153: 50% bucket 158: 40% bucket 160: 30% bucket 159: 40% bucket 145: 80% bucket 149: 70% bucket 146: 70% bucket 150: 50% bucket 144: 90% bucket 139: 100% Sorting block of length 3240611 for bucket 139 (Using difference cover) bucket 152: 70% bucket 148: 60% bucket 151: 60% bucket 155: 50% bucket 139: 90% bucket 161: 20% Sorting block time: 00:00:04 Returning block of 4580565 for bucket 136 bucket 147: 60% bucket 165: 10% Sorting block time: 00:00:03 Returning block of 3941795 for bucket 138 bucket 147: 70% bucket 145: 70% bucket 157: 40% Getting block 166 of 209 Reserving size (4887258) for bucket 166 Calculating Z arrays for bucket 166 Entering block accumulator loop for bucket 166: bucket 158: 50% bucket 156: 50% Getting block 163 of 196 Reserving size (4887258) for bucket 163 Calculating Z arrays for bucket 163 Entering block accumulator loop for bucket 163: bucket 150: 60% bucket 146: 80% bucket 159: 40% bucket 153: 60% bucket 154: 60% bucket 164: 20% bucket 155: 60% bucket 162: 30% bucket 163: 20% bucket 151: 70% bucket 156: 50% bucket 161: 30% bucket 162: 20% bucket 149: 70% bucket 140: 90% Sorting block time: 00:00:02 Returning block of 2325016 for bucket 142 Getting block 167 of 209 Reserving size (4887258) for bucket 167 Calculating Z arrays for bucket 167 Entering block accumulator loop for bucket 167: bucket 157: 50% bucket 143: 80% bucket 154: 60% bucket 143: 100% Sorting block of length 4063354 for bucket 143 (Using difference cover) bucket 142: 90% bucket 160: 40% bucket 148: 80% bucket 149: 80% bucket 153: 60% bucket 141: 100% Sorting block of length 3249438 for bucket 141 (Using difference cover) bucket 144: 80% bucket 158: 50% bucket 152: 60% bucket 160: 40% bucket 145: 90% bucket 159: 50% bucket 144: 100% Sorting block of length 4635319 for bucket 144 (Using difference cover) bucket 146: 80% Sorting block time: 00:00:03 Returning block of 4595883 for bucket 141 bucket 151: 70% bucket 152: 80% Getting block 168 of 209 Reserving size (4887258) for bucket 168 Calculating Z arrays for bucket 168 Entering block accumulator loop for bucket 168: bucket 150: 60% bucket 155: 60% bucket 148: 70% bucket 154: 70% bucket 161: 30% bucket 147: 70% bucket 139: 100% Sorting block of length 2139150 for bucket 139 (Using difference cover) bucket 165: 20% bucket 157: 50% bucket 147: 80% Sorting block time: 00:00:04 Returning block of 4337191 for bucket 136 bucket 166: 10% bucket 158: 60% bucket 163: 10% bucket 145: 80% bucket 164: 30% bucket 150: 70% bucket 162: 40% bucket 146: 90% Getting block 164 of 196 Reserving size (4887258) for bucket 164 Calculating Z arrays for bucket 164 Entering block accumulator loop for bucket 164: bucket 156: 60% bucket 159: 50% bucket 155: 70% bucket 148: 90% bucket 156: 60% bucket 163: 30% Sorting block time: 00:00:03 Returning block of 3240612 for bucket 139 bucket 151: 80% bucket 162: 30% bucket 161: 40% bucket 153: 70% Getting block 169 of 209 Reserving size (4887258) for bucket 169 Calculating Z arrays for bucket 169 Entering block accumulator loop for bucket 169: bucket 149: 80% bucket 157: 60% bucket 149: 90% bucket 140: 100% Sorting block of length 4606906 for bucket 140 (Using difference cover) bucket 143: 90% bucket 167: 10% bucket 160: 50% bucket 154: 70% bucket 145: 100% Sorting block of length 4299622 for bucket 145 (Using difference cover) bucket 153: 70% bucket 142: 100% Sorting block of length 3733300 for bucket 142 (Using difference cover) bucket 158: 60% bucket 144: 90% bucket 160: 50% bucket 152: 70% bucket 159: 60% bucket 159: 60% bucket 146: 90% bucket 152: 90% bucket 155: 80% bucket 168: 10% bucket 155: 70% bucket 151: 80% bucket 154: 80% bucket 148: 80% bucket 150: 70% bucket 147: 80% bucket 161: 40% bucket 157: 60% bucket 165: 30% bucket 147: 90% bucket 166: 20% bucket 146: 100% Sorting block of length 1964966 for bucket 146 (Using difference cover) bucket 162: 50% bucket 158: 70% bucket 164: 40% bucket 163: 20% bucket 145: 90% bucket 148: 100% Sorting block of length 2609040 for bucket 148 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4762071 for bucket 137 bucket 164: 10% bucket 151: 90% bucket 156: 70% Sorting block time: 00:00:04 Returning block of 4063355 for bucket 143 bucket 162: 40% bucket 169: 10% bucket 161: 50% Getting block 165 of 196 Reserving size (4887258) for bucket 165 Calculating Z arrays for bucket 165 Entering block accumulator loop for bucket 165: bucket 163: 40% bucket 150: 80% bucket 149: 90% Getting block 170 of 209 Reserving size (4887258) for bucket 170 Calculating Z arrays for bucket 170 Entering block accumulator loop for bucket 170: bucket 156: 70% bucket 149: 100% Sorting block of length 4035806 for bucket 149 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3249439 for bucket 141 Sorting block time: 00:00:03 Returning block of 2139151 for bucket 139 bucket 143: 100% Sorting block of length 4297548 for bucket 143 (Using difference cover) bucket 157: 70% bucket 167: 20% Getting block 166 of 196 Reserving size (4887258) for bucket 166 Calculating Z arrays for bucket 166 Entering block accumulator loop for bucket 166: bucket 153: 80% Getting block 167 of 196 Reserving size (4887258) for bucket 167 Calculating Z arrays for bucket 167 Entering block accumulator loop for bucket 167: bucket 153: 80% bucket 158: 70% bucket 160: 60% bucket 144: 100% Sorting block of length 4818687 for bucket 144 (Using difference cover) bucket 154: 80% bucket 160: 60% bucket 159: 70% bucket 152: 80% bucket 152: 100% Sorting block of length 3654870 for bucket 152 (Using difference cover) bucket 159: 70% bucket 146: 100% Sorting block of length 2599099 for bucket 146 (Using difference cover) bucket 168: 20% bucket 151: 90% bucket 155: 80% bucket 154: 90% bucket 155: 90% bucket 148: 90% Sorting block time: 00:00:02 Returning block of 1964967 for bucket 146 bucket 165: 40% bucket 166: 30% bucket 157: 70% Getting block 171 of 209 Reserving size (4887258) for bucket 171 Calculating Z arrays for bucket 171 Entering block accumulator loop for bucket 171: bucket 147: 100% Sorting block of length 4771068 for bucket 147 (Using difference cover) bucket 147: 90% bucket 162: 60% bucket 161: 50% bucket 164: 50% bucket 145: 100% Sorting block of length 3024497 for bucket 145 (Using difference cover) bucket 163: 30% bucket 150: 80% bucket 165: 10% bucket 158: 80% bucket 151: 100% Sorting block of length 2671996 for bucket 151 (Using difference cover) bucket 156: 80% bucket 150: 90% Sorting block time: 00:00:04 Returning block of 4635320 for bucket 144 bucket 169: 20% bucket 161: 60% Sorting block time: 00:00:02 Returning block of 2609041 for bucket 148 bucket 162: 50% bucket 170: 10% bucket 163: 50% Getting block 172 of 209 Reserving size (4887258) for bucket 172 Calculating Z arrays for bucket 172 Entering block accumulator loop for bucket 172: bucket 159: 80% bucket 149: 100% Sorting block of length 2092417 for bucket 149 (Using difference cover) bucket 164: 20% Getting block 173 of 209 Reserving size (4887258) for bucket 173 Calculating Z arrays for bucket 173 Entering block accumulator loop for bucket 173: bucket 156: 80% bucket 167: 30% bucket 166: 10% bucket 153: 90% bucket 157: 80% bucket 153: 90% bucket 158: 80% bucket 167: 10% bucket 160: 70% Sorting block time: 00:00:04 Returning block of 4606907 for bucket 140 bucket 154: 90% Sorting block time: 00:00:04 Returning block of 3733301 for bucket 142 bucket 152: 90% bucket 160: 70% Getting block 168 of 196 Reserving size (4887258) for bucket 168 Calculating Z arrays for bucket 168 Entering block accumulator loop for bucket 168: bucket 168: 30% Getting block 169 of 196 Reserving size (4887258) for bucket 169 Calculating Z arrays for bucket 169 Entering block accumulator loop for bucket 169: bucket 159: 80% bucket 151: 100% Sorting block of length 4781388 for bucket 151 (Using difference cover) bucket 155: 90% bucket 156: 90% bucket 155: 100% Sorting block of length 4429779 for bucket 155 (Using difference cover) bucket 165: 20% bucket 165: 50% bucket 171: 10% bucket 148: 100% Sorting block of length 5401428 for bucket 148 (Using difference cover) bucket 166: 40% bucket 159: 90% bucket 162: 70% bucket 147: 100% Sorting block of length 4050254 for bucket 147 (Using difference cover) bucket 157: 80% bucket 164: 60% bucket 154: 100% Sorting block of length 4059778 for bucket 154 (Using difference cover) bucket 163: 40% bucket 161: 60% bucket 158: 90% bucket 169: 30% bucket 150: 100% Sorting block of length 2792499 for bucket 150 (Using difference cover) bucket 170: 20% Sorting block time: 00:00:03 Returning block of 2599100 for bucket 146 bucket 172: 10% bucket 161: 70% bucket 150: 90% bucket 162: 60% Sorting block time: 00:00:03 Returning block of 4035807 for bucket 149 Getting block 170 of 196 Reserving size (4887258) for bucket 170 Calculating Z arrays for bucket 170 Entering block accumulator loop for bucket 170: bucket 163: 60% bucket 157: 90% bucket 164: 30% Getting block 174 of 209 Reserving size (4887258) for bucket 174 Calculating Z arrays for bucket 174 Entering block accumulator loop for bucket 174: bucket 167: 40% bucket 153: 100% Sorting block of length 1690038 for bucket 153 (Using difference cover) bucket 156: 90% bucket 173: 10% bucket 158: 90% bucket 166: 20% bucket 153: 100% Sorting block of length 4777929 for bucket 153 (Using difference cover) Sorting block time: 00:00:06 Returning block of 4299623 for bucket 145 bucket 167: 20% Sorting block time: 00:00:02 Returning block of 2092418 for bucket 149 Getting block 171 of 196 Reserving size (4887258) for bucket 171 Calculating Z arrays for bucket 171 Entering block accumulator loop for bucket 171: Getting block 175 of 209 Reserving size (4887258) for bucket 175 Calculating Z arrays for bucket 175 Entering block accumulator loop for bucket 175: bucket 160: 80% bucket 152: 100% Sorting block of length 2514988 for bucket 152 (Using difference cover) bucket 168: 40% Sorting block time: 00:00:04 Returning block of 3654871 for bucket 152 bucket 154: 100% Sorting block of length 4618432 for bucket 154 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4297549 for bucket 143 Sorting block time: 00:00:03 Returning block of 3024498 for bucket 145 bucket 160: 80% bucket 169: 10% bucket 168: 10% Getting block 176 of 209 Reserving size (4887258) for bucket 176 Calculating Z arrays for bucket 176 Entering block accumulator loop for bucket 176: bucket 159: 90% Getting block 172 of 196 Reserving size (4887258) for bucket 172 Calculating Z arrays for bucket 172 Entering block accumulator loop for bucket 172: Getting block 173 of 196 Reserving size (4887258) for bucket 173 Calculating Z arrays for bucket 173 Entering block accumulator loop for bucket 173: bucket 159: 100% Sorting block of length 4824889 for bucket 159 (Using difference cover) Sorting block time: 00:00:03 Returning block of 2671997 for bucket 151 bucket 155: 100% Sorting block of length 4616066 for bucket 155 (Using difference cover) bucket 156: 100% Sorting block of length 3698965 for bucket 156 (Using difference cover) bucket 164: 70% Getting block 174 of 196 Reserving size (4887258) for bucket 174 Calculating Z arrays for bucket 174 Entering block accumulator loop for bucket 174: bucket 171: 20% bucket 165: 60% bucket 165: 30% bucket 166: 50% bucket 162: 80% bucket 157: 90% bucket 163: 50% bucket 170: 30% bucket 158: 100% Sorting block of length 3942508 for bucket 158 (Using difference cover) bucket 161: 70% bucket 172: 20% Sorting block time: 00:00:04 Returning block of 4771069 for bucket 147 bucket 161: 80% Sorting block time: 00:00:01 Returning block of 1690039 for bucket 153 bucket 157: 100% Sorting block of length 4169058 for bucket 157 (Using difference cover) bucket 169: 40% bucket 162: 70% Getting block 177 of 209 Reserving size (4887258) for bucket 177 Calculating Z arrays for bucket 177 Entering block accumulator loop for bucket 177: Getting block 178 of 209 Reserving size (4887258) for bucket 178 Calculating Z arrays for bucket 178 Entering block accumulator loop for bucket 178: bucket 163: 70% Sorting block time: 00:00:05 Returning block of 4818688 for bucket 144 bucket 170: 10% bucket 164: 40% bucket 167: 50% bucket 174: 10% bucket 150: 100% Sorting block of length 4386297 for bucket 150 (Using difference cover) bucket 173: 20% bucket 158: 100% Sorting block of length 3450477 for bucket 158 (Using difference cover) bucket 159: 100% Sorting block of length 1795251 for bucket 159 (Using difference cover) bucket 166: 30% Getting block 175 of 196 Reserving size (4887258) for bucket 175 Calculating Z arrays for bucket 175 Entering block accumulator loop for bucket 175: bucket 156: 100% Sorting block of length 3340100 for bucket 156 (Using difference cover) bucket 167: 30% bucket 175: 10% bucket 168: 50% bucket 171: 10% bucket 160: 90% bucket 173: 10% bucket 160: 90% bucket 176: 10% bucket 169: 20% bucket 168: 20% bucket 172: 10% bucket 171: 30% bucket 164: 80% bucket 165: 70% bucket 166: 60% bucket 174: 10% bucket 165: 40% bucket 162: 90% Sorting block time: 00:00:03 Returning block of 2792500 for bucket 150 bucket 157: 100% Sorting block of length 1980353 for bucket 157 (Using difference cover) bucket 170: 40% Getting block 176 of 196 Reserving size (4887258) for bucket 176 Calculating Z arrays for bucket 176 Entering block accumulator loop for bucket 176: bucket 163: 60% bucket 172: 30% Sorting block time: 00:00:02 Returning block of 1795252 for bucket 159 Sorting block time: 00:00:04 Returning block of 4059779 for bucket 154 Getting block 177 of 196 Reserving size (4887258) for bucket 177 Calculating Z arrays for bucket 177 Entering block accumulator loop for bucket 177: Sorting block time: 00:00:03 Returning block of 2514989 for bucket 152 bucket 169: 50% bucket 161: 90% Getting block 179 of 209 Reserving size (4887258) for bucket 179 Calculating Z arrays for bucket 179 Entering block accumulator loop for bucket 179: bucket 161: 80% Getting block 178 of 196 Reserving size (4887258) for bucket 178 Calculating Z arrays for bucket 178 Entering block accumulator loop for bucket 178: bucket 167: 60% bucket 162: 80% bucket 174: 20% bucket 163: 80% bucket 164: 50% bucket 173: 30% bucket 170: 20% Sorting block time: 00:00:04 Returning block of 4050255 for bucket 147 bucket 177: 10% bucket 178: 10% Sorting block time: 00:00:04 Returning block of 4429780 for bucket 155 bucket 166: 40% Getting block 179 of 196 Reserving size (4887258) for bucket 179 Calculating Z arrays for bucket 179 Entering block accumulator loop for bucket 179: Getting block 180 of 196 Reserving size (4887258) for bucket 180 Calculating Z arrays for bucket 180 Entering block accumulator loop for bucket 180: bucket 175: 10% bucket 167: 40% bucket 168: 60% bucket 175: 20% bucket 173: 20% Sorting block time: 00:00:06 Returning block of 4781389 for bucket 151 bucket 171: 20% bucket 160: 100% Sorting block of length 4515568 for bucket 160 (Using difference cover) bucket 160: 100% Sorting block of length 4219809 for bucket 160 (Using difference cover) bucket 176: 20% Sorting block time: 00:00:04 Returning block of 3698966 for bucket 156 Getting block 180 of 209 Reserving size (4887258) for bucket 180 Calculating Z arrays for bucket 180 Entering block accumulator loop for bucket 180: bucket 169: 30% bucket 171: 40% bucket 172: 20% bucket 168: 30% Getting block 181 of 209 Reserving size (4887258) for bucket 181 Calculating Z arrays for bucket 181 Entering block accumulator loop for bucket 181: Sorting block time: 00:00:05 Returning block of 5401429 for bucket 148 bucket 164: 90% bucket 165: 80% bucket 166: 70% bucket 162: 100% Sorting block of length 3304395 for bucket 162 (Using difference cover) bucket 165: 50% bucket 174: 20% Getting block 181 of 196 Reserving size (4887258) for bucket 181 Calculating Z arrays for bucket 181 Entering block accumulator loop for bucket 181: bucket 170: 50% bucket 172: 40% Sorting block time: 00:00:04 Returning block of 4777930 for bucket 153 Sorting block time: 00:00:02 Returning block of 1980354 for bucket 157 bucket 176: 10% Getting block 182 of 209 Reserving size (4887258) for bucket 182 Calculating Z arrays for bucket 182 Entering block accumulator loop for bucket 182: bucket 163: 70% bucket 169: 60% Sorting block time: 00:00:04 Returning block of 4169059 for bucket 157 Sorting block time: 00:00:03 Returning block of 3340101 for bucket 156 bucket 179: 10% Getting block 182 of 196 Reserving size (4887258) for bucket 182 Calculating Z arrays for bucket 182 Entering block accumulator loop for bucket 182: bucket 175: 30% bucket 177: 10% bucket 161: 100% Sorting block of length 4286268 for bucket 161 (Using difference cover) Getting block 183 of 196 Reserving size (4887258) for bucket 183 Calculating Z arrays for bucket 183 Entering block accumulator loop for bucket 183: Getting block 184 of 196 Reserving size (4887258) for bucket 184 Calculating Z arrays for bucket 184 Entering block accumulator loop for bucket 184: bucket 178: 10% bucket 167: 70% bucket 173: 40% bucket 174: 30% bucket 162: 90% bucket 161: 90% bucket 164: 60% bucket 163: 90% bucket 177: 20% Sorting block time: 00:00:04 Returning block of 3942509 for bucket 158 Sorting block time: 00:00:05 Returning block of 4824890 for bucket 159 bucket 170: 30% bucket 178: 20% bucket 173: 30% Sorting block time: 00:00:04 Returning block of 3450478 for bucket 158 Getting block 185 of 196 Reserving size (4887258) for bucket 185 Calculating Z arrays for bucket 185 Entering block accumulator loop for bucket 185: Getting block 183 of 209 Reserving size (4887258) for bucket 183 Calculating Z arrays for bucket 183 Entering block accumulator loop for bucket 183: Getting block 184 of 209 Reserving size (4887258) for bucket 184 Calculating Z arrays for bucket 184 Entering block accumulator loop for bucket 184: bucket 166: 50% bucket 179: 10% Sorting block time: 00:00:05 Returning block of 4616067 for bucket 155 Sorting block time: 00:00:04 Returning block of 4386298 for bucket 150 bucket 168: 70% bucket 180: 10% bucket 175: 20% bucket 167: 50% Sorting block time: 00:00:05 Returning block of 4618433 for bucket 154 Getting block 185 of 209 Reserving size (4887258) for bucket 185 Calculating Z arrays for bucket 185 Entering block accumulator loop for bucket 185: Getting block 186 of 209 Reserving size (4887258) for bucket 186 Calculating Z arrays for bucket 186 Entering block accumulator loop for bucket 186: bucket 180: 10% bucket 176: 30% bucket 171: 30% Getting block 186 of 196 Reserving size (4887258) for bucket 186 Calculating Z arrays for bucket 186 Entering block accumulator loop for bucket 186: bucket 171: 50% bucket 169: 70% bucket 181: 10% bucket 169: 40% bucket 164: 100% Sorting block of length 2642721 for bucket 164 (Using difference cover) bucket 172: 30% bucket 168: 40% bucket 165: 90% bucket 175: 40% bucket 166: 80% bucket 170: 60% bucket 165: 60% bucket 181: 10% bucket 174: 30% bucket 182: 10% bucket 172: 50% bucket 182: 10% bucket 176: 20% bucket 163: 80% bucket 179: 20% bucket 173: 50% bucket 184: 10% bucket 183: 10% bucket 177: 20% bucket 167: 80% bucket 174: 40% bucket 178: 20% bucket 162: 100% Sorting block of length 4213526 for bucket 162 (Using difference cover) bucket 163: 100% Sorting block of length 4490038 for bucket 163 (Using difference cover) bucket 164: 70% bucket 161: 100% Sorting block of length 4848969 for bucket 161 (Using difference cover) bucket 178: 30% bucket 177: 30% bucket 183: 10% bucket 170: 40% bucket 184: 10% bucket 185: 10% bucket 168: 80% bucket 166: 60% bucket 173: 40% bucket 179: 20% bucket 185: 10% bucket 186: 10% bucket 180: 20% bucket 175: 30% bucket 180: 20% bucket 171: 60% bucket 176: 40% bucket 169: 80% bucket 181: 20% bucket 186: 10% Sorting block time: 00:00:03 Returning block of 3304396 for bucket 162 bucket 171: 40% bucket 167: 60% bucket 175: 50% Getting block 187 of 209 Reserving size (4887258) for bucket 187 Calculating Z arrays for bucket 187 Entering block accumulator loop for bucket 187: bucket 169: 50% bucket 172: 40% bucket 165: 100% Sorting block of length 2584934 for bucket 165 (Using difference cover) bucket 170: 70% bucket 168: 50% bucket 166: 90% bucket 181: 20% bucket 172: 60% bucket 182: 20% bucket 165: 70% bucket 174: 40% Sorting block time: 00:00:04 Returning block of 4515569 for bucket 160 Sorting block time: 00:00:04 Returning block of 4219810 for bucket 160 bucket 182: 20% bucket 179: 30% Sorting block time: 00:00:02 Returning block of 2642722 for bucket 164 Getting block 188 of 209 Reserving size (4887258) for bucket 188 Calculating Z arrays for bucket 188 Entering block accumulator loop for bucket 188: bucket 176: 30% bucket 163: 90% Getting block 189 of 209 Reserving size (4887258) for bucket 189 Calculating Z arrays for bucket 189 Entering block accumulator loop for bucket 189: Getting block 187 of 196 Reserving size (4887258) for bucket 187 Calculating Z arrays for bucket 187 Entering block accumulator loop for bucket 187: bucket 173: 60% bucket 174: 50% bucket 167: 90% bucket 184: 20% bucket 183: 20% bucket 177: 30% bucket 178: 30% bucket 178: 40% bucket 177: 40% bucket 164: 80% bucket 183: 20% bucket 184: 20% bucket 168: 90% bucket 170: 50% bucket 185: 20% Sorting block time: 00:00:04 Returning block of 4286269 for bucket 161 bucket 166: 70% bucket 173: 50% bucket 186: 20% bucket 179: 30% bucket 185: 20% bucket 180: 30% bucket 171: 70% bucket 180: 30% bucket 175: 40% Getting block 190 of 209 Reserving size (4887258) for bucket 190 Calculating Z arrays for bucket 190 Entering block accumulator loop for bucket 190: bucket 169: 90% bucket 176: 50% bucket 181: 30% bucket 175: 60% bucket 186: 20% bucket 187: 10% bucket 167: 70% bucket 171: 50% bucket 170: 80% bucket 172: 50% bucket 169: 60% bucket 166: 100% Sorting block of length 3710859 for bucket 166 (Using difference cover) bucket 174: 50% bucket 168: 60% bucket 172: 70% bucket 182: 30% bucket 181: 30% bucket 179: 40% bucket 188: 10% bucket 165: 80% bucket 182: 30% bucket 189: 10% bucket 173: 70% bucket 163: 100% Sorting block of length 3167694 for bucket 163 (Using difference cover) bucket 176: 40% Sorting block time: 00:00:02 Returning block of 2584935 for bucket 165 bucket 187: 10% bucket 167: 100% Sorting block of length 2645711 for bucket 167 (Using difference cover) bucket 174: 60% Getting block 191 of 209 Reserving size (4887258) for bucket 191 Calculating Z arrays for bucket 191 bucket 184: 30% Entering block accumulator loop for bucket 191: bucket 183: 30% bucket 178: 40% bucket 183: 30% bucket 177: 40% bucket 178: 50% bucket 177: 50% bucket 164: 90% bucket 184: 30% bucket 168: 100% Sorting block of length 3925382 for bucket 168 (Using difference cover) bucket 171: 80% bucket 185: 30% bucket 170: 60% bucket 185: 30% bucket 186: 30% bucket 173: 60% bucket 166: 80% bucket 180: 40% bucket 190: 10% bucket 179: 40% Sorting block time: 00:00:04 Returning block of 4490039 for bucket 163 bucket 169: 100% Sorting block of length 4704769 for bucket 169 (Using difference cover) bucket 181: 40% bucket 176: 60% bucket 175: 70% bucket 180: 40% bucket 175: 50% Sorting block time: 00:00:04 Returning block of 4213527 for bucket 162 bucket 187: 20% Getting block 192 of 209 Reserving size (4887258) for bucket 192 Calculating Z arrays for bucket 192 Entering block accumulator loop for bucket 192: bucket 170: 90% bucket 186: 30% Getting block 188 of 196 Reserving size (4887258) for bucket 188 Calculating Z arrays for bucket 188 Entering block accumulator loop for bucket 188: bucket 167: 80% bucket 171: 60% bucket 172: 60% bucket 172: 80% bucket 182: 40% bucket 169: 70% bucket 174: 60% bucket 168: 70% bucket 179: 50% bucket 189: 20% Sorting block time: 00:00:05 Returning block of 4848970 for bucket 161 bucket 181: 40% bucket 188: 20% bucket 165: 90% bucket 182: 40% bucket 173: 80% Getting block 189 of 196 Reserving size (4887258) for bucket 189 Calculating Z arrays for bucket 189 Entering block accumulator loop for bucket 189: bucket 176: 50% bucket 174: 70% bucket 191: 10% bucket 187: 20% bucket 183: 40% bucket 184: 40% bucket 178: 60% bucket 183: 40% bucket 178: 50% bucket 184: 40% bucket 177: 50% bucket 177: 60% Sorting block time: 00:00:03 Returning block of 3710860 for bucket 166 bucket 171: 90% bucket 185: 40% Getting block 193 of 209 Reserving size (4887258) for bucket 193 Calculating Z arrays for bucket 193 Entering block accumulator loop for bucket 193: bucket 164: 100% Sorting block of length 3445712 for bucket 164 (Using difference cover) bucket 185: 40% bucket 180: 50% bucket 190: 20% bucket 186: 40% bucket 170: 70% bucket 173: 70% bucket 181: 50% bucket 166: 90% bucket 179: 50% Sorting block time: 00:00:03 Returning block of 2645712 for bucket 167 bucket 175: 80% bucket 187: 30% bucket 176: 70% bucket 170: 100% Sorting block of length 4589913 for bucket 170 (Using difference cover) bucket 192: 10% Getting block 194 of 209 Reserving size (4887258) for bucket 194 Calculating Z arrays for bucket 194 Entering block accumulator loop for bucket 194: bucket 175: 60% bucket 174: 70% bucket 180: 50% bucket 186: 40% bucket 172: 90% bucket 188: 10% bucket 167: 90% bucket 182: 50% bucket 172: 70% Sorting block time: 00:00:03 Returning block of 3167695 for bucket 163 bucket 171: 70% Getting block 190 of 196 Reserving size (4887258) for bucket 190 Calculating Z arrays for bucket 190 Entering block accumulator loop for bucket 190: bucket 169: 80% bucket 179: 60% bucket 168: 80% bucket 189: 30% bucket 181: 50% bucket 188: 30% bucket 173: 90% bucket 165: 100% Sorting block of length 4303265 for bucket 165 (Using difference cover) bucket 182: 50% bucket 191: 20% bucket 174: 80% bucket 189: 10% bucket 176: 60% bucket 183: 50% bucket 187: 30% bucket 184: 50% bucket 178: 70% bucket 184: 50% bucket 183: 50% bucket 178: 60% bucket 171: 100% Sorting block of length 4054974 for bucket 171 (Using difference cover) bucket 177: 70% bucket 177: 60% bucket 185: 50% bucket 193: 10% bucket 180: 60% bucket 190: 30% bucket 185: 50% bucket 186: 50% bucket 181: 60% Sorting block time: 00:00:04 Returning block of 3925383 for bucket 168 bucket 173: 80% bucket 166: 100% Sorting block of length 3886876 for bucket 166 (Using difference cover) Getting block 195 of 209 Reserving size (4887258) for bucket 195 Calculating Z arrays for bucket 195 Entering block accumulator loop for bucket 195: bucket 170: 80% bucket 187: 40% bucket 194: 10% bucket 175: 90% bucket 179: 60% bucket 192: 20% bucket 176: 80% bucket 175: 70% bucket 172: 100% Sorting block of length 4421007 for bucket 172 (Using difference cover) bucket 186: 50% bucket 182: 60% bucket 180: 60% bucket 174: 80% bucket 167: 100% Sorting block of length 2180424 for bucket 167 (Using difference cover) bucket 188: 20% bucket 172: 80% bucket 171: 80% bucket 179: 70% bucket 190: 10% bucket 189: 40% bucket 169: 90% Sorting block time: 00:00:04 Returning block of 4704770 for bucket 169 bucket 188: 40% bucket 168: 90% bucket 173: 100% Sorting block of length 2694425 for bucket 173 (Using difference cover) Getting block 196 of 209 Reserving size (4887258) for bucket 196 Calculating Z arrays for bucket 196 Entering block accumulator loop for bucket 196: bucket 181: 60% bucket 182: 60% bucket 191: 30% bucket 183: 60% bucket 174: 90% bucket 180: 70% bucket 189: 20% bucket 176: 70% bucket 184: 60% bucket 192: 30% bucket 184: 60% bucket 187: 40% bucket 183: 60% bucket 178: 80% bucket 178: 70% bucket 177: 70% bucket 177: 80% bucket 190: 40% bucket 193: 20% bucket 181: 70% bucket 186: 60% bucket 185: 60% Sorting block time: 00:00:04 Returning block of 3445713 for bucket 164 bucket 195: 10% bucket 194: 20% bucket 187: 50% bucket 185: 60% Getting block 191 of 196 Reserving size (4887258) for bucket 191 Calculating Z arrays for bucket 191 Entering block accumulator loop for bucket 191: bucket 175: 100% Sorting block of length 2494463 for bucket 175 (Using difference cover) bucket 173: 90% bucket 176: 90% bucket 179: 70% bucket 182: 70% bucket 175: 80% bucket 186: 60% bucket 180: 70% bucket 174: 90% bucket 188: 30% bucket 170: 90% bucket 179: 80% bucket 172: 90% bucket 180: 80% Sorting block time: 00:00:04 Returning block of 4589914 for bucket 170 bucket 190: 20% bucket 171: 90% bucket 188: 50% bucket 169: 100% Sorting block of length 2494635 for bucket 169 (Using difference cover) bucket 196: 10% bucket 192: 40% bucket 168: 100% Sorting block of length 4247346 for bucket 168 (Using difference cover) bucket 191: 40% Getting block 197 of 209 Reserving size (4887258) for bucket 197 Calculating Z arrays for bucket 197 Entering block accumulator loop for bucket 197: bucket 183: 70% bucket 181: 70% bucket 182: 70% bucket 174: 100% Sorting block of length 3562692 for bucket 174 (Using difference cover) bucket 189: 50% bucket 189: 30% Sorting block time: 00:00:02 Returning block of 2180425 for bucket 167 bucket 184: 70% bucket 176: 80% Getting block 192 of 196 Reserving size (4887258) for bucket 192 Calculating Z arrays for bucket 192 Entering block accumulator loop for bucket 192: bucket 184: 70% bucket 183: 70% bucket 187: 50% bucket 178: 90% bucket 190: 50% bucket 177: 90% bucket 178: 80% Sorting block time: 00:00:03 Returning block of 2694426 for bucket 173 bucket 193: 30% bucket 181: 80% bucket 186: 70% bucket 177: 80% bucket 195: 20% bucket 194: 30% Getting block 198 of 209 Reserving size (4887258) for bucket 198 Calculating Z arrays for bucket 198 Entering block accumulator loop for bucket 198: bucket 187: 60% bucket 185: 70% bucket 185: 70% bucket 179: 80% bucket 191: 10% bucket 173: 100% Sorting block of length 3819948 for bucket 173 (Using difference cover) bucket 176: 100% Sorting block of length 4044496 for bucket 176 (Using difference cover) bucket 182: 80% Sorting block time: 00:00:04 Returning block of 3886877 for bucket 166 bucket 175: 90% bucket 186: 70% Getting block 193 of 196 Reserving size (4887258) for bucket 193 Calculating Z arrays for bucket 193 Entering block accumulator loop for bucket 193: Sorting block time: 00:00:04 Returning block of 4303266 for bucket 165 bucket 174: 100% Sorting block of length 3604547 for bucket 174 (Using difference cover) bucket 180: 80% bucket 180: 90% Sorting block time: 00:00:03 Returning block of 2494464 for bucket 175 bucket 179: 90% bucket 188: 40% bucket 172: 100% Sorting block of length 1721069 for bucket 172 (Using difference cover) bucket 188: 60% Getting block 194 of 196 Reserving size (4887258) for bucket 194 Calculating Z arrays for bucket 194 Entering block accumulator loop for bucket 194: Getting block 199 of 209 Reserving size (4887258) for bucket 199 Calculating Z arrays for bucket 199 Entering block accumulator loop for bucket 199: bucket 170: 100% Sorting block of length 4725207 for bucket 170 (Using difference cover) bucket 196: 20% bucket 190: 30% bucket 197: 10% bucket 171: 100% Sorting block of length 4123045 for bucket 171 (Using difference cover) bucket 192: 50% Sorting block time: 00:00:05 Returning block of 4054975 for bucket 171 bucket 183: 80% bucket 189: 60% bucket 191: 50% Getting block 200 of 209 Reserving size (4887258) for bucket 200 Calculating Z arrays for bucket 200 Entering block accumulator loop for bucket 200: bucket 181: 80% bucket 182: 80% bucket 189: 40% bucket 184: 80% bucket 176: 90% bucket 178: 100% Sorting block of length 4647043 for bucket 178 (Using difference cover) bucket 192: 10% bucket 184: 80% bucket 190: 60% bucket 195: 30% bucket 177: 100% Sorting block of length 3785875 for bucket 177 (Using difference cover) bucket 187: 60% bucket 181: 90% bucket 194: 40% bucket 186: 80% bucket 193: 40% Sorting block time: 00:00:02 Returning block of 2494636 for bucket 169 bucket 183: 80% bucket 178: 90% bucket 198: 10% bucket 187: 70% Getting block 195 of 196 Reserving size (4887258) for bucket 195 Calculating Z arrays for bucket 195 Entering block accumulator loop for bucket 195: bucket 177: 90% bucket 185: 80% bucket 185: 80% bucket 179: 90% bucket 191: 20% bucket 182: 90% bucket 180: 100% Sorting block of length 4846282 for bucket 180 (Using difference cover) bucket 175: 100% Sorting block of length 4113481 for bucket 175 (Using difference cover) bucket 186: 80% bucket 179: 100% Sorting block of length 3110000 for bucket 179 (Using difference cover) bucket 193: 10% bucket 199: 10% bucket 196: 30% bucket 180: 90% bucket 188: 70% bucket 197: 20% bucket 188: 50% bucket 194: 10% Sorting block time: 00:00:01 Returning block of 1721070 for bucket 172 bucket 192: 60% bucket 190: 40% Getting block 196 of 196 Reserving size (4887258) for bucket 196 Calculating Z arrays for bucket 196 Entering block accumulator loop for bucket 196: bucket 183: 90% Sorting block time: 00:00:04 Returning block of 3562693 for bucket 174 bucket 200: 10% Sorting block time: 00:00:06 Returning block of 4421008 for bucket 172 bucket 189: 70% bucket 191: 60% bucket 184: 90% Getting block 201 of 209 Reserving size (4887258) for bucket 201 Calculating Z arrays for bucket 201 Entering block accumulator loop for bucket 201: bucket 182: 90% Getting block 202 of 209 Reserving size (4887258) for bucket 202 Calculating Z arrays for bucket 202 Entering block accumulator loop for bucket 202: bucket 181: 90% bucket 189: 50% bucket 195: 40% bucket 194: 50% bucket 190: 70% bucket 185: 90% bucket 184: 90% bucket 176: 100% Sorting block of length 4331210 for bucket 176 (Using difference cover) bucket 192: 20% bucket 186: 90% bucket 198: 20% bucket 193: 50% bucket 181: 100% Sorting block of length 2312274 for bucket 181 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4247347 for bucket 168 bucket 183: 90% bucket 178: 100% Sorting block of length 2324275 for bucket 178 (Using difference cover) bucket 187: 80% bucket 187: 70% bucket 177: 100% Sorting block of length 4242914 for bucket 177 (Using difference cover) bucket 185: 90% bucket 195: 10% bucket 179: 100% Sorting block of length 4186691 for bucket 179 (Using difference cover) bucket 182: 100% Sorting block of length 3440924 for bucket 182 (Using difference cover) bucket 191: 30% bucket 199: 20% bucket 196: 10% bucket 196: 40% Sorting block time: 00:00:04 Returning block of 3819949 for bucket 173 bucket 186: 90% bucket 197: 30% bucket 200: 20% bucket 184: 100% Sorting block of length 4313237 for bucket 184 (Using difference cover) bucket 180: 100% Sorting block of length 3586710 for bucket 180 (Using difference cover) bucket 193: 20% bucket 192: 70% bucket 188: 80% bucket 188: 60% bucket 183: 100% Sorting block of length 4626469 for bucket 183 (Using difference cover) bucket 194: 20% bucket 191: 70% bucket 189: 80% bucket 201: 10% Sorting block time: 00:00:04 Returning block of 4044497 for bucket 176 bucket 182: 100% Sorting block of length 4864473 for bucket 182 (Using difference cover) Sorting block time: 00:00:03 Returning block of 3785876 for bucket 177 bucket 190: 50% Sorting block time: 00:00:05 Returning block of 3604548 for bucket 174 bucket 181: 100% Sorting block of length 3485442 for bucket 181 (Using difference cover) Getting block 203 of 209 Reserving size (4887258) for bucket 203 Calculating Z arrays for bucket 203 Entering block accumulator loop for bucket 203: bucket 192: 30% Getting block 204 of 209 Reserving size (4887258) for bucket 204 Calculating Z arrays for bucket 204 Entering block accumulator loop for bucket 204: bucket 185: 100% Sorting block of length 2331603 for bucket 185 (Using difference cover) bucket 202: 10% bucket 194: 60% bucket 195: 50% bucket 189: 60% bucket 193: 60% bucket 190: 80% bucket 199: 30% bucket 198: 30% bucket 186: 100% Sorting block of length 3701263 for bucket 186 (Using difference cover) bucket 184: 100% Sorting block of length 4095622 for bucket 184 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4725208 for bucket 170 bucket 183: 100% Sorting block of length 2081610 for bucket 183 (Using difference cover) bucket 196: 20% Sorting block time: 00:00:04 Returning block of 4123046 for bucket 171 bucket 187: 90% bucket 185: 100% Sorting block of length 2925185 for bucket 185 (Using difference cover) bucket 187: 80% Sorting block time: 00:00:02 Returning block of 2312275 for bucket 181 Sorting block time: 00:00:02 Returning block of 2324276 for bucket 178 Getting block 205 of 209 Reserving size (4887258) for bucket 205 Calculating Z arrays for bucket 205 Entering block accumulator loop for bucket 205: bucket 200: 30% bucket 197: 40% bucket 191: 40% bucket 195: 20% bucket 189: 90% bucket 196: 50% Sorting block time: 00:00:04 Returning block of 3110001 for bucket 179 Sorting block time: 00:00:05 Returning block of 4647044 for bucket 178 bucket 192: 40% Getting block 206 of 209 Reserving size (4887258) for bucket 206 Calculating Z arrays for bucket 206 Entering block accumulator loop for bucket 206: bucket 186: 100% Sorting block of length 2574235 for bucket 186 (Using difference cover) bucket 193: 70% bucket 188: 90% bucket 192: 80% bucket 189: 70% bucket 204: 10% bucket 191: 80% Getting block 207 of 209 Reserving size (4887258) for bucket 207 Calculating Z arrays for bucket 207 Entering block accumulator loop for bucket 207: bucket 193: 30% Sorting block time: 00:00:04 Returning block of 4113482 for bucket 175 bucket 201: 20% bucket 194: 30% bucket 199: 40% bucket 188: 70% bucket 203: 10% bucket 190: 90% bucket 202: 20% bucket 189: 100% Sorting block of length 1787411 for bucket 189 (Using difference cover) bucket 195: 60% bucket 194: 70% bucket 190: 60% bucket 196: 30% Sorting block time: 00:00:02 Returning block of 3440925 for bucket 182 bucket 198: 40% Getting block 208 of 209 Reserving size (4887258) for bucket 208 Calculating Z arrays for bucket 208 Entering block accumulator loop for bucket 208: Sorting block time: 00:00:04 Returning block of 4242915 for bucket 177 bucket 197: 50% Sorting block time: 00:00:05 Returning block of 4846283 for bucket 180 Sorting block time: 00:00:02 Returning block of 2331604 for bucket 185 bucket 187: 100% Sorting block of length 2457427 for bucket 187 (Using difference cover) bucket 200: 40% Getting block 209 of 209 Reserving size (4887258) for bucket 209 Calculating Z arrays for bucket 209 Entering block accumulator loop for bucket 209: bucket 205: 10% bucket 199: 50% bucket 187: 90% Sorting block time: 00:00:02 Returning block of 3485443 for bucket 181 Sorting block time: 00:00:02 Returning block of 3701264 for bucket 186 Sorting block time: 00:00:03 Returning block of 3586711 for bucket 180 Sorting block time: 00:00:03 Returning block of 4186692 for bucket 179 Sorting block time: 00:00:02 Returning block of 2081611 for bucket 183 Sorting block time: 00:00:04 Returning block of 4331211 for bucket 176 bucket 196: 60% bucket 191: 50% Sorting block time: 00:00:01 Returning block of 1787412 for bucket 189 bucket 195: 70% bucket 195: 30% bucket 193: 80% bucket 191: 90% bucket 196: 40% Sorting block time: 00:00:03 Returning block of 4313238 for bucket 184 bucket 206: 10% bucket 204: 20% bucket 188: 100% Sorting block of length 4697198 for bucket 188 (Using difference cover) bucket 192: 50% bucket 207: 10% bucket 202: 30% bucket 208: 10% Sorting block time: 00:00:03 Returning block of 4095623 for bucket 184 bucket 190: 100% Sorting block of length 4216963 for bucket 190 (Using difference cover) bucket 201: 30% bucket 192: 90% bucket 188: 80% bucket 203: 20% bucket 197: 60% bucket 193: 40% bucket 189: 80% Sorting block time: 00:00:04 Returning block of 4864474 for bucket 182 bucket 194: 40% bucket 194: 80% bucket 199: 60% bucket 209: 10% bucket 196: 50% bucket 205: 20% bucket 190: 70% bucket 198: 50% bucket 200: 50% bucket 207: 20% bucket 193: 90% Sorting block time: 00:00:03 Returning block of 2925186 for bucket 185 bucket 192: 60% Sorting block time: 00:00:02 Returning block of 2574236 for bucket 186 bucket 191: 100% Sorting block of length 3474694 for bucket 191 (Using difference cover) bucket 196: 70% bucket 187: 100% Sorting block of length 4618338 for bucket 187 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2457428 for bucket 187 bucket 208: 20% bucket 202: 40% bucket 197: 70% bucket 195: 40% bucket 204: 30% Sorting block time: 00:00:05 Returning block of 4626470 for bucket 183 bucket 188: 90% bucket 195: 80% bucket 201: 40% bucket 209: 20% bucket 196: 60% bucket 203: 30% bucket 191: 60% bucket 194: 90% bucket 192: 100% Sorting block of length 2115176 for bucket 192 (Using difference cover) bucket 193: 50% bucket 199: 70% bucket 200: 60% bucket 207: 30% bucket 206: 20% bucket 189: 90% bucket 205: 30% bucket 194: 50% bucket 196: 80% bucket 190: 80% bucket 193: 100% Sorting block of length 3811785 for bucket 193 (Using difference cover) bucket 209: 30% bucket 198: 60% bucket 208: 30% Sorting block time: 00:00:01 Returning block of 4697199 for bucket 188 bucket 197: 80% bucket 196: 70% bucket 195: 90% bucket 195: 50% bucket 192: 70% bucket 204: 40% bucket 188: 100% Sorting block of length 1173514 for bucket 188 (Using difference cover) bucket 202: 50% bucket 199: 80% bucket 203: 40% bucket 207: 40% bucket 194: 100% Sorting block of length 3803151 for bucket 194 (Using difference cover) bucket 201: 50% bucket 193: 60% bucket 191: 70% bucket 200: 70% bucket 189: 100% Sorting block of length 4239991 for bucket 189 (Using difference cover) bucket 209: 40% bucket 205: 40% bucket 196: 90% Sorting block time: 00:00:02 Returning block of 3474695 for bucket 191 bucket 196: 80% Sorting block time: 00:00:01 Returning block of 2115177 for bucket 192 bucket 194: 60% bucket 198: 70% bucket 206: 30% bucket 208: 40% bucket 190: 90% bucket 195: 100% Sorting block of length 3108819 for bucket 195 (Using difference cover) bucket 197: 90% Sorting block time: 00:00:01 Returning block of 1173515 for bucket 188 bucket 195: 60% Sorting block time: 00:00:03 Returning block of 4216964 for bucket 190 bucket 204: 50% bucket 192: 80% bucket 209: 50% bucket 199: 90% bucket 207: 50% bucket 202: 60% bucket 196: 90% bucket 201: 60% bucket 203: 50% Sorting block time: 00:00:02 Returning block of 4618339 for bucket 187 bucket 200: 80% bucket 191: 80% bucket 196: 100% Sorting block of length 2976295 for bucket 196 (Using difference cover) bucket 205: 50% bucket 193: 70% bucket 198: 80% bucket 208: 50% bucket 209: 60% bucket 206: 40% bucket 194: 70% Sorting block time: 00:00:02 Returning block of 3811786 for bucket 193 bucket 197: 100% Sorting block of length 3688489 for bucket 197 (Using difference cover) bucket 190: 100% Sorting block of length 4253809 for bucket 190 (Using difference cover) bucket 204: 60% bucket 196: 100% Sorting block of length 1264426 for bucket 196 (Using difference cover) bucket 207: 60% bucket 195: 70% bucket 199: 100% Sorting block of length 3400000 for bucket 199 (Using difference cover) bucket 192: 90% bucket 202: 70% bucket 201: 70% bucket 203: 60% bucket 200: 90% bucket 209: 70% bucket 205: 60% Sorting block time: 00:00:02 Returning block of 3108820 for bucket 195 bucket 191: 90% bucket 208: 60% bucket 193: 80% Sorting block time: 00:00:02 Returning block of 3803152 for bucket 194 Sorting block time: 00:00:02 Returning block of 4239992 for bucket 189 bucket 198: 90% bucket 206: 50% bucket 194: 80% bucket 204: 70% bucket 207: 70% bucket 209: 80% bucket 202: 80% bucket 195: 80% bucket 192: 100% Sorting block of length 2477178 for bucket 192 (Using difference cover) bucket 201: 80% bucket 203: 70% Sorting block time: 00:00:02 Returning block of 2976296 for bucket 196 bucket 200: 100% Sorting block of length 2483422 for bucket 200 (Using difference cover) bucket 205: 70% bucket 208: 70% bucket 191: 100% Sorting block of length 2859653 for bucket 191 (Using difference cover) bucket 198: 100% Sorting block of length 4693310 for bucket 198 (Using difference cover) bucket 193: 90% bucket 209: 90% bucket 206: 60% Sorting block time: 00:00:01 Returning block of 3400001 for bucket 199 Sorting block time: 00:00:02 Returning block of 3688490 for bucket 197 bucket 204: 80% bucket 207: 80% bucket 194: 90% bucket 202: 90% bucket 203: 80% bucket 195: 90% bucket 201: 90% Sorting block time: 00:00:02 Returning block of 4253810 for bucket 190 bucket 209: 100% Sorting block of length 152109 for bucket 209 (Using difference cover) Sorting block time: 00:00:00 Returning block of 152110 for bucket 209 bucket 205: 80% bucket 208: 80% bucket 206: 70% bucket 193: 100% Sorting block of length 4052596 for bucket 193 (Using difference cover) Sorting block time: 00:00:01 Returning block of 2483423 for bucket 200 bucket 204: 90% bucket 207: 90% bucket 202: 100% Sorting block of length 4862037 for bucket 202 (Using difference cover) bucket 194: 100% Sorting block of length 3066471 for bucket 194 (Using difference cover) bucket 203: 90% bucket 201: 100% Sorting block of length 4629353 for bucket 201 (Using difference cover) bucket 195: 100% Sorting block of length 4874747 for bucket 195 (Using difference cover) bucket 205: 90% Sorting block time: 00:00:02 Returning block of 2477179 for bucket 192 Sorting block time: 00:00:03 Returning block of 1264427 for bucket 196 bucket 208: 90% bucket 206: 80% bucket 204: 100% Sorting block of length 3340315 for bucket 204 (Using difference cover) bucket 207: 100% Sorting block of length 3986782 for bucket 207 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2859654 for bucket 191 bucket 203: 100% Sorting block of length 4349518 for bucket 203 (Using difference cover) Sorting block time: 00:00:02 Returning block of 4693311 for bucket 198 bucket 205: 100% Sorting block of length 4009857 for bucket 205 (Using difference cover) bucket 208: 100% Sorting block of length 4832795 for bucket 208 (Using difference cover) bucket 206: 90% Sorting block time: 00:00:02 Returning block of 4862038 for bucket 202 bucket 206: 100% Sorting block of length 4704980 for bucket 206 (Using difference cover) Sorting block time: 00:00:01 Returning block of 3340316 for bucket 204 Sorting block time: 00:00:03 Returning block of 4052597 for bucket 193 Sorting block time: 00:00:03 Returning block of 4629354 for bucket 201 Sorting block time: 00:00:02 Returning block of 3986783 for bucket 207 Sorting block time: 00:00:03 Returning block of 3066472 for bucket 194 Sorting block time: 00:00:02 Returning block of 4349519 for bucket 203 Sorting block time: 00:00:02 Returning block of 4009858 for bucket 205 Sorting block time: 00:00:02 Returning block of 4832796 for bucket 208 Sorting block time: 00:00:02 Returning block of 4704981 for bucket 206 Sorting block time: 00:00:04 Returning block of 4874748 for bucket 195 Exited Ebwt loop fchr[A]: 0 fchr[C]: 218041673 fchr[G]: 218041673 fchr[T]: 365007388 fchr[$]: 729830598 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 247662946 bytes to primary EBWT file: BS_CT.1.bt2 Wrote 182457656 bytes to secondary EBWT file: BS_CT.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 729830598 bwtLen: 729830599 sz: 182457650 bwtSz: 182457650 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 45614413 offsSz: 182457652 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3801202 numLines: 3801202 ebwtTotLen: 243276928 ebwtTotSz: 243276928 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:03:31 Reading reference sizes Exited Ebwt loop fchr[A]: 0 fchr[C]: 365007388 fchr[G]: 512126086 fchr[T]: 512126086 fchr[$]: 729830598 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 247662946 bytes to primary EBWT file: BS_GA.1.bt2 Wrote 182457656 bytes to secondary EBWT file: BS_GA.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 729830598 bwtLen: 729830599 sz: 182457650 bwtSz: 182457650 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 45614413 offsSz: 182457652 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3801202 numLines: 3801202 ebwtTotLen: 243276928 ebwtTotSz: 243276928 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:03:31 Reading reference sizes Time reading reference sizes: 00:00:06 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time reading reference sizes: 00:00:06 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:03 Time to reverse reference sequence: 00:00:01 bmax according to bmaxDivN setting: 6516344 Using parameters --bmax 4887258 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 4887258 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples Time to join reference sequences: 00:00:04 Time to reverse reference sequence: 00:00:00 bmax according to bmaxDivN setting: 6516344 Using parameters --bmax 4887258 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 4887258 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:07 Allocating rank array Ranking v-sort output V-Sorting samples time: 00:00:07 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:04 Invoking Larsson-Sadakane on ranks Ranking v-sort output time: 00:00:05 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:06 Sanity-checking and returning Building samples Reserving space for 300 sample suffixes Generating random suffixes QSorting 300 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 300 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Invoking Larsson-Sadakane on ranks time: 00:00:06 Sanity-checking and returning Building samples Reserving space for 300 sample suffixes Generating random suffixes QSorting 300 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 300 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Split 35, merged 133; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 48, merged 133; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 18, merged 13; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 25, merged 21; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 10, merged 12; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 13, merged 21; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 6, merged 6; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 7, merged 7; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 6, merged 5; iterating... Avg bucket size: 3.52575e+06 (target: 4887257) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 207 Reserving size (4887258) for bucket 1 Getting block 2 of 207 Getting block 3 of 207 Getting block 4 of 207 Calculating Z arrays for bucket 1 Reserving size (4887258) for bucket 2 Getting block 5 of 207 Reserving size (4887258) for bucket 3 Getting block 6 of 207 Reserving size (4887258) for bucket 4 Getting block 7 of 207 Getting block 8 of 207 Getting block 9 of 207 Getting block 10 of 207 Getting block 11 of 207 Getting block 12 of 207 Getting block 13 of 207 Getting block 14 of 207 Getting block 15 of 207 Getting block 16 of 207 Getting block 17 of 207 Getting block 18 of 207 Getting block 19 of 207 Getting block 20 of 207 Getting block 21 of 207 Getting block 22 of 207 Getting block 23 of 207 Getting block 24 of 207 Getting block 25 of 207 Entering block accumulator loop for bucket 1: Calculating Z arrays for bucket 2 Reserving size (4887258) for bucket 5 Getting block 26 of 207 Calculating Z arrays for bucket 3 Reserving size (4887258) for bucket 6 Calculating Z arrays for bucket 4 Reserving size (4887258) for bucket 7 Reserving size (4887258) for bucket 8 Reserving size (4887258) for bucket 9 Reserving size (4887258) for bucket 10 Reserving size (4887258) for bucket 11 Reserving size (4887258) for bucket 12 Reserving size (4887258) for bucket 13 Reserving size (4887258) for bucket 14 Reserving size (4887258) for bucket 15 Reserving size (4887258) for bucket 16 Reserving size (4887258) for bucket 17 Reserving size (4887258) for bucket 18 Reserving size (4887258) for bucket 19 Reserving size (4887258) for bucket 20 Reserving size (4887258) for bucket 21 Reserving size (4887258) for bucket 22 Reserving size (4887258) for bucket 23 Reserving size (4887258) for bucket 24 Reserving size (4887258) for bucket 25 Entering block accumulator loop for bucket 2: Calculating Z arrays for bucket 5 Reserving size (4887258) for bucket 26 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 3: Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 4: Calculating Z arrays for bucket 8 Calculating Z arrays for bucket 9 Calculating Z arrays for bucket 10 Calculating Z arrays for bucket 11 Calculating Z arrays for bucket 12 Calculating Z arrays for bucket 13 Calculating Z arrays for bucket 14 Calculating Z arrays for bucket 15 Calculating Z arrays for bucket 16 Calculating Z arrays for bucket 17 Calculating Z arrays for bucket 18 Calculating Z arrays for bucket 19 Calculating Z arrays for bucket 20 Calculating Z arrays for bucket 21 Calculating Z arrays for bucket 22 Calculating Z arrays for bucket 23 Calculating Z arrays for bucket 24 Calculating Z arrays for bucket 25 Calculating Z arrays for bucket 26 Entering block accumulator loop for bucket 5: Entering block accumulator loop for bucket 6: Entering block accumulator loop for bucket 7: Entering block accumulator loop for bucket 8: Entering block accumulator loop for bucket 9: Entering block accumulator loop for bucket 10: Entering block accumulator loop for bucket 11: Entering block accumulator loop for bucket 12: Entering block accumulator loop for bucket 13: Entering block accumulator loop for bucket 14: Entering block accumulator loop for bucket 15: Entering block accumulator loop for bucket 16: Entering block accumulator loop for bucket 17: Entering block accumulator loop for bucket 18: Entering block accumulator loop for bucket 19: Entering block accumulator loop for bucket 20: Entering block accumulator loop for bucket 21: Entering block accumulator loop for bucket 22: Entering block accumulator loop for bucket 23: Entering block accumulator loop for bucket 24: Entering block accumulator loop for bucket 25: Entering block accumulator loop for bucket 26: Getting block 27 of 207 Reserving size (4887258) for bucket 27 Calculating Z arrays for bucket 27 Entering block accumulator loop for bucket 27: bucket 15: 10% bucket 20: 10% bucket 2: 10% bucket 1: 10% bucket 3: 10% bucket 4: 10% bucket 17: 10% bucket 9: 10% bucket 5: 10% bucket 10: 10% bucket 12: 10% bucket 13: 10% bucket 14: 10% bucket 7: 10% bucket 19: 10% bucket 6: 10% bucket 8: 10% bucket 18: 10% bucket 16: 10% bucket 22: 10% bucket 26: 10% bucket 21: 10% bucket 23: 10% bucket 27: 10% bucket 2: 20% bucket 11: 10% bucket 25: 10% bucket 24: 10% bucket 15: 20% bucket 2: 30% bucket 20: 20% bucket 1: 20% bucket 13: 20% bucket 3: 20% bucket 4: 20% bucket 9: 20% bucket 5: 20% bucket 10: 20% bucket 12: 20% bucket 8: 20% bucket 17: 20% bucket 7: 20% bucket 6: 20% bucket 19: 20% bucket 18: 20% bucket 14: 20% bucket 22: 20% bucket 16: 20% bucket 15: 30% bucket 26: 20% bucket 21: 20% bucket 23: 20% bucket 27: 20% bucket 2: 40% bucket 11: 20% bucket 24: 20% bucket 25: 20% bucket 13: 30% bucket 1: 30% bucket 3: 30% bucket 20: 30% bucket 9: 30% bucket 4: 30% bucket 27: 30% bucket 7: 30% bucket 5: 30% bucket 22: 30% bucket 12: 30% bucket 16: 30% bucket 23: 30% bucket 19: 30% bucket 15: 40% bucket 2: 50% bucket 11: 30% bucket 6: 30% bucket 26: 30% bucket 14: 30% bucket 1: 40% bucket 10: 30% bucket 18: 30% bucket 21: 30% bucket 17: 30% bucket 8: 30% bucket 3: 40% Splitting and merging Splitting and merging time: 00:00:00 Split 4, merged 5; iterating... Avg bucket size: 3.45891e+06 (target: 4887257) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 211 Reserving size (4887258) for bucket 1 Getting block 2 of 211 Getting block 3 of 211 Getting block 4 of 211 Getting block 5 of 211 Getting block 6 of 211 Getting block 7 of 211 Getting block 8 of 211 Getting block 9 of 211 Getting block 10 of 211 Getting block 11 of 211 Getting block 12 of 211 Getting block 13 of 211 Getting block 14 of 211 Getting block 15 of 211 Calculating Z arrays for bucket 1 Reserving size (4887258) for bucket 2 Reserving size (4887258) for bucket 3 Reserving size (4887258) for bucket 4 Getting block 16 of 211 Getting block 17 of 211 Getting block 18 of 211 Reserving size (4887258) for bucket 5 Reserving size (4887258) for bucket 6 Reserving size (4887258) for bucket 7 Reserving size (4887258) for bucket 8 Reserving size (4887258) for bucket 9 Reserving size (4887258) for bucket 10 Reserving size (4887258) for bucket 11 Reserving size (4887258) for bucket 12 Reserving size (4887258) for bucket 13 Reserving size (4887258) for bucket 14 Reserving size (4887258) for bucket 15 Getting block 19 of 211 Getting block 20 of 211 Getting block 21 of 211 Getting block 22 of 211 Entering block accumulator loop for bucket 1: Getting block 23 of 211 Getting block 24 of 211 Calculating Z arrays for bucket 2 Calculating Z arrays for bucket 3 Calculating Z arrays for bucket 4 Reserving size (4887258) for bucket 16 Reserving size (4887258) for bucket 17 Reserving size (4887258) for bucket 18 Getting block 25 of 211 Getting block 26 of 211 Calculating Z arrays for bucket 5 Calculating Z arrays for bucket 6 Calculating Z arrays for bucket 7 Calculating Z arrays for bucket 8 Calculating Z arrays for bucket 9 Calculating Z arrays for bucket 10 Calculating Z arrays for bucket 11 Calculating Z arrays for bucket 12 Calculating Z arrays for bucket 13 Calculating Z arrays for bucket 14 Calculating Z arrays for bucket 15 Reserving size (4887258) for bucket 19 Reserving size (4887258) for bucket 20 Reserving size (4887258) for bucket 21 Reserving size (4887258) for bucket 22 Reserving size (4887258) for bucket 23 Reserving size (4887258) for bucket 24 Entering block accumulator loop for bucket 2: Entering block accumulator loop for bucket 3: Calculating Z arrays for bucket 16 Entering block accumulator loop for bucket 4: Calculating Z arrays for bucket 17 Calculating Z arrays for bucket 18 Reserving size (4887258) for bucket 25 Reserving size (4887258) for bucket 26 Entering block accumulator loop for bucket 5: Entering block accumulator loop for bucket 6: Entering block accumulator loop for bucket 7: Entering block accumulator loop for bucket 8: Entering block accumulator loop for bucket 9: Entering block accumulator loop for bucket 10: Entering block accumulator loop for bucket 11: Entering block accumulator loop for bucket 12: Entering block accumulator loop for bucket 13: Calculating Z arrays for bucket 19 Entering block accumulator loop for bucket 14: Calculating Z arrays for bucket 20 Entering block accumulator loop for bucket 15: Calculating Z arrays for bucket 21 Calculating Z arrays for bucket 22 Calculating Z arrays for bucket 23 Calculating Z arrays for bucket 24 Entering block accumulator loop for bucket 16: Calculating Z arrays for bucket 25 Entering block accumulator loop for bucket 17: Entering block accumulator loop for bucket 18: Calculating Z arrays for bucket 26 Entering block accumulator loop for bucket 19: Entering block accumulator loop for bucket 20: Entering block accumulator loop for bucket 21: Entering block accumulator loop for bucket 22: Entering block accumulator loop for bucket 23: Entering block accumulator loop for bucket 24: Entering block accumulator loop for bucket 25: Entering block accumulator loop for bucket 26: Getting block 27 of 211 Reserving size (4887258) for bucket 27 Calculating Z arrays for bucket 27 Entering block accumulator loop for bucket 27: bucket 9: 40% bucket 25: 30% bucket 20: 40% bucket 13: 40% bucket 27: 40% bucket 4: 40% bucket 24: 30% bucket 14: 40% bucket 8: 40% bucket 7: 40% bucket 22: 40% bucket 16: 40% bucket 18: 40% bucket 5: 40% bucket 9: 50% bucket 2: 60% bucket 12: 40% bucket 19: 40% bucket 1: 50% bucket 15: 50% bucket 23: 40% bucket 6: 40% bucket 27: 50% bucket 11: 40% bucket 3: 50% bucket 10: 40% bucket 26: 40% bucket 6: 10% bucket 21: 40% bucket 2: 10% bucket 1: 10% bucket 9: 10% bucket 8: 10% bucket 13: 50% bucket 7: 10% bucket 12: 10% bucket 17: 40% bucket 25: 40% bucket 11: 10% bucket 15: 10% bucket 14: 10% bucket 19: 10% bucket 16: 10% bucket 4: 50% bucket 20: 10% bucket 3: 10% bucket 24: 10% bucket 4: 10% bucket 22: 10% bucket 20: 50% bucket 5: 10% bucket 17: 10% bucket 13: 10% bucket 10: 10% bucket 23: 10% bucket 21: 10% bucket 18: 10% bucket 27: 10% bucket 26: 10% bucket 25: 10% bucket 8: 50% bucket 14: 50% bucket 7: 50% bucket 1: 60% bucket 24: 40% bucket 5: 50% bucket 2: 70% bucket 9: 60% bucket 18: 50% bucket 22: 50% bucket 16: 50% bucket 8: 20% bucket 12: 50% bucket 19: 50% bucket 6: 50% bucket 15: 60% bucket 20: 60% bucket 3: 60% bucket 27: 60% bucket 23: 50% bucket 10: 50% bucket 11: 50% bucket 6: 20% bucket 13: 60% bucket 21: 50% bucket 4: 60% bucket 26: 50% bucket 1: 20% bucket 2: 20% bucket 9: 20% bucket 7: 20% bucket 17: 50% bucket 11: 20% bucket 12: 20% bucket 25: 50% bucket 14: 20% bucket 15: 20% bucket 3: 20% bucket 4: 20% bucket 16: 20% bucket 5: 20% bucket 10: 20% bucket 19: 20% bucket 20: 20% bucket 13: 20% bucket 24: 20% bucket 17: 20% bucket 22: 20% bucket 15: 70% bucket 1: 70% bucket 23: 20% bucket 22: 60% bucket 21: 20% bucket 8: 60% bucket 18: 20% bucket 20: 70% bucket 7: 60% bucket 5: 60% bucket 2: 80% bucket 14: 60% bucket 26: 20% bucket 8: 30% bucket 27: 20% bucket 25: 20% bucket 9: 70% bucket 3: 70% bucket 24: 50% bucket 16: 60% bucket 18: 60% bucket 12: 60% bucket 6: 60% bucket 12: 30% bucket 19: 60% bucket 10: 60% bucket 11: 60% bucket 4: 70% bucket 23: 60% bucket 13: 70% bucket 27: 70% bucket 3: 80% bucket 1: 30% bucket 2: 30% bucket 6: 30% bucket 21: 60% bucket 9: 30% bucket 26: 60% bucket 7: 30% bucket 3: 30% bucket 5: 30% bucket 4: 30% bucket 17: 60% bucket 25: 60% bucket 1: 80% bucket 2: 90% bucket 16: 30% bucket 15: 30% bucket 5: 70% bucket 11: 30% bucket 15: 80% bucket 10: 30% bucket 19: 30% bucket 13: 30% bucket 14: 30% bucket 7: 70% bucket 24: 30% bucket 20: 30% bucket 20: 80% bucket 17: 30% bucket 22: 70% bucket 22: 30% bucket 14: 70% bucket 19: 70% bucket 23: 30% bucket 8: 70% bucket 18: 30% bucket 8: 40% bucket 9: 80% bucket 21: 30% bucket 27: 80% bucket 16: 70% bucket 6: 70% bucket 18: 70% bucket 24: 60% bucket 27: 30% bucket 9: 40% bucket 25: 30% bucket 12: 40% bucket 3: 90% bucket 12: 70% bucket 4: 80% bucket 11: 70% bucket 23: 70% bucket 26: 30% bucket 13: 80% bucket 19: 80% bucket 6: 40% bucket 1: 40% bucket 10: 70% bucket 2: 40% bucket 21: 70% bucket 1: 90% bucket 2: 100% Sorting block of length 2546598 for bucket 2 (Using difference cover) bucket 5: 80% bucket 26: 70% bucket 7: 40% bucket 3: 40% bucket 11: 40% bucket 5: 40% bucket 4: 40% bucket 14: 40% bucket 7: 80% bucket 4: 90% bucket 16: 40% bucket 17: 70% bucket 15: 90% bucket 20: 90% bucket 25: 70% bucket 15: 40% bucket 10: 40% bucket 13: 40% bucket 19: 40% bucket 22: 80% bucket 14: 80% bucket 9: 90% bucket 24: 40% bucket 20: 40% bucket 17: 40% bucket 8: 50% bucket 9: 50% bucket 8: 80% bucket 22: 40% bucket 3: 100% Sorting block of length 3857598 for bucket 3 (Using difference cover) bucket 6: 80% bucket 27: 90% bucket 18: 40% bucket 23: 40% bucket 21: 40% bucket 16: 80% bucket 18: 80% bucket 12: 80% bucket 24: 70% bucket 12: 50% bucket 27: 40% bucket 25: 40% bucket 11: 80% bucket 13: 90% bucket 16: 50% bucket 19: 90% bucket 23: 80% bucket 1: 100% Sorting block of length 3927122 for bucket 1 (Using difference cover) bucket 26: 40% bucket 20: 100% Sorting block of length 1631807 for bucket 20 (Using difference cover) bucket 10: 80% bucket 6: 50% bucket 1: 50% bucket 2: 50% bucket 5: 90% bucket 4: 100% Sorting block of length 4775633 for bucket 4 (Using difference cover) bucket 21: 80% bucket 7: 90% bucket 7: 50% bucket 5: 50% bucket 12: 60% bucket 26: 80% bucket 11: 50% bucket 3: 50% bucket 15: 100% Sorting block of length 1848608 for bucket 15 (Using difference cover) bucket 14: 50% bucket 4: 50% bucket 22: 50% bucket 17: 80% bucket 9: 100% Sorting block of length 3038794 for bucket 9 (Using difference cover) bucket 10: 50% bucket 15: 50% bucket 6: 90% bucket 13: 50% bucket 14: 90% bucket 8: 90% bucket 19: 50% bucket 22: 90% bucket 8: 60% bucket 21: 50% bucket 9: 60% bucket 27: 50% bucket 17: 50% bucket 24: 50% bucket 25: 80% bucket 20: 50% bucket 16: 90% bucket 12: 90% bucket 18: 90% bucket 18: 50% bucket 27: 100% Sorting block of length 4808906 for bucket 27 (Using difference cover) bucket 23: 50% Sorting block time: 00:00:02 Returning block of 2546599 for bucket 2 bucket 11: 90% bucket 16: 60% Getting block 28 of 207 Reserving size (4887258) for bucket 28 Calculating Z arrays for bucket 28 Entering block accumulator loop for bucket 28: bucket 24: 80% bucket 13: 100% Sorting block of length 3774673 for bucket 13 (Using difference cover) bucket 25: 50% bucket 19: 100% Sorting block of length 4328298 for bucket 19 (Using difference cover) bucket 23: 90% bucket 5: 100% Sorting block of length 1827526 for bucket 5 (Using difference cover) bucket 10: 90% bucket 1: 60% bucket 6: 60% bucket 2: 60% bucket 15: 60% bucket 26: 50% bucket 7: 100% Sorting block of length 4658131 for bucket 7 (Using difference cover) bucket 21: 90% bucket 12: 70% bucket 12: 100% Sorting block of length 4849840 for bucket 12 (Using difference cover) bucket 7: 60% bucket 26: 90% bucket 5: 60% bucket 3: 60% bucket 22: 60% Sorting block time: 00:00:01 Returning block of 1631808 for bucket 20 bucket 4: 60% bucket 6: 100% Sorting block of length 3710687 for bucket 6 (Using difference cover) bucket 11: 60% bucket 8: 100% Sorting block of length 3143797 for bucket 8 (Using difference cover) bucket 14: 60% Getting block 29 of 207 Reserving size (4887258) for bucket 29 Calculating Z arrays for bucket 29 Entering block accumulator loop for bucket 29: bucket 14: 100% Sorting block of length 4183981 for bucket 14 (Using difference cover) bucket 17: 90% bucket 10: 60% bucket 13: 60% bucket 19: 60% bucket 21: 60% bucket 22: 100% Sorting block of length 2316032 for bucket 22 (Using difference cover) bucket 8: 70% bucket 9: 70% bucket 16: 100% Sorting block of length 3539747 for bucket 16 (Using difference cover) bucket 23: 100% Sorting block of length 4622681 for bucket 23 (Using difference cover) bucket 18: 100% Sorting block of length 4282657 for bucket 18 (Using difference cover) bucket 11: 100% Sorting block of length 4280832 for bucket 11 (Using difference cover) bucket 17: 60% bucket 24: 60% bucket 25: 90% bucket 27: 60% bucket 20: 60% Sorting block time: 00:00:02 Returning block of 1848609 for bucket 15 bucket 18: 60% bucket 23: 60% Getting block 30 of 207 Reserving size (4887258) for bucket 30 Calculating Z arrays for bucket 30 Entering block accumulator loop for bucket 30: bucket 16: 70% bucket 28: 10% bucket 24: 90% bucket 10: 100% Sorting block of length 4228606 for bucket 10 (Using difference cover) bucket 11: 70% bucket 6: 70% bucket 15: 70% bucket 25: 60% bucket 1: 70% bucket 2: 70% bucket 21: 100% Sorting block of length 3421644 for bucket 21 (Using difference cover) bucket 26: 60% bucket 12: 80% bucket 5: 70% Sorting block time: 00:00:03 Returning block of 3927123 for bucket 1 bucket 14: 70% bucket 7: 70% Sorting block time: 00:00:04 Returning block of 3857599 for bucket 3 bucket 3: 70% bucket 26: 100% Sorting block of length 1215386 for bucket 26 (Using difference cover) bucket 4: 70% Sorting block time: 00:00:02 Returning block of 1827527 for bucket 5 Getting block 31 of 207 Reserving size (4887258) for bucket 31 Calculating Z arrays for bucket 31 Entering block accumulator loop for bucket 31: bucket 22: 70% Getting block 32 of 207 Reserving size (4887258) for bucket 32 Calculating Z arrays for bucket 32 Entering block accumulator loop for bucket 32: Getting block 33 of 207 Reserving size (4887258) for bucket 33 Calculating Z arrays for bucket 33 Entering block accumulator loop for bucket 33: bucket 29: 10% bucket 17: 100% Sorting block of length 4759019 for bucket 17 (Using difference cover) Sorting block time: 00:00:03 Returning block of 3038795 for bucket 9 bucket 10: 70% bucket 13: 70% bucket 9: 80% bucket 19: 70% bucket 8: 80% Getting block 34 of 207 Reserving size (4887258) for bucket 34 Calculating Z arrays for bucket 34 Entering block accumulator loop for bucket 34: bucket 21: 70% bucket 11: 80% bucket 24: 70% bucket 6: 80% bucket 20: 70% bucket 18: 70% bucket 17: 70% bucket 30: 10% bucket 14: 80% bucket 28: 20% bucket 23: 70% bucket 16: 80% bucket 27: 70% bucket 25: 100% Sorting block of length 4039189 for bucket 25 (Using difference cover) bucket 24: 100% Sorting block of length 2268228 for bucket 24 (Using difference cover) bucket 25: 70% Sorting block time: 00:00:01 Returning block of 1215387 for bucket 26 bucket 1: 80% bucket 15: 80% Getting block 35 of 207 Reserving size (4887258) for bucket 35 Calculating Z arrays for bucket 35 Entering block accumulator loop for bucket 35: Sorting block time: 00:00:02 Returning block of 2316033 for bucket 22 bucket 2: 80% Getting block 36 of 207 Reserving size (4887258) for bucket 36 Calculating Z arrays for bucket 36 Entering block accumulator loop for bucket 36: bucket 12: 90% bucket 5: 80% bucket 7: 80% bucket 3: 80% bucket 26: 70% bucket 4: 80% bucket 24: 80% bucket 6: 90% Sorting block time: 00:00:03 Returning block of 3774674 for bucket 13 bucket 31: 10% bucket 22: 80% bucket 32: 10% bucket 33: 10% Sorting block time: 00:00:04 Returning block of 4808907 for bucket 27 bucket 29: 20% bucket 11: 90% bucket 10: 80% bucket 8: 90% bucket 13: 80% Getting block 37 of 207 Reserving size (4887258) for bucket 37 Calculating Z arrays for bucket 37 Entering block accumulator loop for bucket 37: bucket 19: 80% Sorting block time: 00:00:03 Returning block of 3143798 for bucket 8 bucket 34: 10% Getting block 38 of 207 Reserving size (4887258) for bucket 38 Calculating Z arrays for bucket 38 Entering block accumulator loop for bucket 38: bucket 9: 90% bucket 21: 80% Getting block 39 of 207 Reserving size (4887258) for bucket 39 Calculating Z arrays for bucket 39 Entering block accumulator loop for bucket 39: Sorting block time: 00:00:05 Returning block of 4775634 for bucket 4 bucket 14: 90% bucket 30: 20% bucket 28: 30% bucket 20: 80% bucket 18: 80% bucket 17: 80% Getting block 40 of 207 Reserving size (4887258) for bucket 40 Calculating Z arrays for bucket 40 Entering block accumulator loop for bucket 40: bucket 16: 90% bucket 23: 80% bucket 12: 100% Sorting block of length 2693198 for bucket 12 (Using difference cover) bucket 27: 80% bucket 1: 90% bucket 11: 100% Sorting block of length 3086975 for bucket 11 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3710688 for bucket 6 bucket 15: 90% bucket 2: 90% bucket 35: 10% bucket 25: 80% Getting block 41 of 207 Reserving size (4887258) for bucket 41 Calculating Z arrays for bucket 41 Entering block accumulator loop for bucket 41: bucket 36: 10% bucket 5: 90% bucket 7: 90% Sorting block time: 00:00:02 Returning block of 2268229 for bucket 24 bucket 3: 90% Sorting block time: 00:00:04 Returning block of 4658132 for bucket 7 Sorting block time: 00:00:03 Returning block of 4282658 for bucket 18 bucket 6: 100% Sorting block of length 4083477 for bucket 6 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4849841 for bucket 12 bucket 4: 90% bucket 26: 80% Getting block 42 of 207 Reserving size (4887258) for bucket 42 Calculating Z arrays for bucket 42 Entering block accumulator loop for bucket 42: bucket 24: 90% bucket 22: 90% bucket 38: 10% Sorting block time: 00:00:03 Returning block of 3421645 for bucket 21 Getting block 43 of 207 Reserving size (4887258) for bucket 43 Calculating Z arrays for bucket 43 Entering block accumulator loop for bucket 43: bucket 14: 100% Sorting block of length 2381989 for bucket 14 (Using difference cover) bucket 8: 100% Sorting block of length 4566351 for bucket 8 (Using difference cover) bucket 29: 30% bucket 34: 20% Getting block 45 of 207 Getting block 44 of 207 Reserving size (4887258) for bucket 45 Reserving size (4887258) for bucket 44 Calculating Z arrays for bucket 45 Calculating Z arrays for bucket 44 Entering block accumulator loop for bucket 45: Entering block accumulator loop for bucket 44: bucket 28: 40% bucket 10: 90% bucket 33: 20% bucket 31: 20% bucket 32: 20% bucket 37: 10% Sorting block time: 00:00:05 Returning block of 4328299 for bucket 19 Sorting block time: 00:00:04 Returning block of 3539748 for bucket 16 bucket 19: 90% Getting block 46 of 207 Reserving size (4887258) for bucket 46 Calculating Z arrays for bucket 46 Entering block accumulator loop for bucket 46: Sorting block time: 00:00:04 Returning block of 4280833 for bucket 11 bucket 13: 90% bucket 21: 90% Getting block 47 of 207 Reserving size (4887258) for bucket 47 Calculating Z arrays for bucket 47 Entering block accumulator loop for bucket 47: bucket 9: 100% Sorting block of length 1298222 for bucket 9 (Using difference cover) Getting block 48 of 207 Reserving size (4887258) for bucket 48 Calculating Z arrays for bucket 48 Entering block accumulator loop for bucket 48: bucket 39: 10% Getting block 49 of 207 Reserving size (4887258) for bucket 49 Calculating Z arrays for bucket 49 Entering block accumulator loop for bucket 49: bucket 30: 30% Sorting block time: 00:00:04 Returning block of 4622682 for bucket 23 bucket 20: 90% bucket 18: 90% bucket 16: 100% Sorting block of length 1765162 for bucket 16 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4183982 for bucket 14 bucket 40: 10% bucket 17: 90% bucket 1: 100% Sorting block of length 929665 for bucket 1 (Using difference cover) Getting block 50 of 207 Reserving size (4887258) for bucket 50 Calculating Z arrays for bucket 50 Entering block accumulator loop for bucket 50: bucket 35: 20% bucket 36: 20% Getting block 51 of 207 Reserving size (4887258) for bucket 51 Calculating Z arrays for bucket 51 Entering block accumulator loop for bucket 51: bucket 38: 20% bucket 15: 100% Sorting block of length 3567069 for bucket 15 (Using difference cover) bucket 3: 100% Sorting block of length 741883 for bucket 3 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4228607 for bucket 10 bucket 23: 90% bucket 2: 100% Sorting block of length 4830827 for bucket 2 (Using difference cover) bucket 25: 90% bucket 27: 90% bucket 5: 100% Sorting block of length 4803051 for bucket 5 (Using difference cover) Getting block 52 of 207 Reserving size (4887258) for bucket 52 Calculating Z arrays for bucket 52 Entering block accumulator loop for bucket 52: bucket 31: 30% bucket 7: 100% Sorting block of length 3425182 for bucket 7 (Using difference cover) bucket 41: 10% bucket 4: 100% Sorting block of length 816832 for bucket 4 (Using difference cover) bucket 22: 100% Sorting block of length 2799843 for bucket 22 (Using difference cover) bucket 24: 100% Sorting block of length 2728703 for bucket 24 (Using difference cover) bucket 26: 90% bucket 21: 100% Sorting block of length 3352070 for bucket 21 (Using difference cover) bucket 42: 10% Sorting block time: 00:00:04 Returning block of 4039190 for bucket 25 bucket 28: 50% bucket 29: 40% bucket 10: 100% Sorting block of length 4674815 for bucket 10 (Using difference cover) bucket 37: 20% bucket 34: 30% Sorting block time: 00:00:01 Returning block of 1298223 for bucket 9 bucket 19: 100% Sorting block of length 2962829 for bucket 19 (Using difference cover) bucket 43: 10% Sorting block time: 00:00:02 Returning block of 3086976 for bucket 11 bucket 32: 30% bucket 33: 30% Getting block 28 of 211 Reserving size (4887258) for bucket 28 Calculating Z arrays for bucket 28 Entering block accumulator loop for bucket 28: Getting block 53 of 207 Reserving size (4887258) for bucket 53 Calculating Z arrays for bucket 53 Entering block accumulator loop for bucket 53: bucket 44: 10% bucket 36: 30% bucket 13: 100% Sorting block of length 3566386 for bucket 13 (Using difference cover) Getting block 29 of 211 Reserving size (4887258) for bucket 29 Calculating Z arrays for bucket 29 Entering block accumulator loop for bucket 29: bucket 46: 10% bucket 30: 40% Sorting block time: 00:00:02 Returning block of 2693199 for bucket 12 bucket 45: 10% bucket 49: 10% Getting block 30 of 211 Reserving size (4887258) for bucket 30 Calculating Z arrays for bucket 30 Entering block accumulator loop for bucket 30: bucket 39: 20% bucket 48: 10% bucket 47: 10% bucket 20: 100% Sorting block of length 4574045 for bucket 20 (Using difference cover) bucket 18: 100% Sorting block of length 2591737 for bucket 18 (Using difference cover) bucket 40: 20% Sorting block time: 00:00:05 Returning block of 4759020 for bucket 17 Sorting block time: 00:00:02 Returning block of 2381990 for bucket 14 Sorting block time: 00:00:02 Returning block of 741884 for bucket 3 Getting block 31 of 211 Reserving size (4887258) for bucket 31 Calculating Z arrays for bucket 31 Entering block accumulator loop for bucket 31: bucket 35: 30% bucket 17: 100% Sorting block of length 3753201 for bucket 17 (Using difference cover) Getting block 32 of 211 Reserving size (4887258) for bucket 32 Calculating Z arrays for bucket 32 Entering block accumulator loop for bucket 32: bucket 38: 30% Sorting block time: 00:00:02 Returning block of 1765163 for bucket 16 bucket 31: 40% bucket 50: 10% Getting block 33 of 211 Reserving size (4887258) for bucket 33 Calculating Z arrays for bucket 33 Entering block accumulator loop for bucket 33: Getting block 54 of 207 Reserving size (4887258) for bucket 54 Calculating Z arrays for bucket 54 Entering block accumulator loop for bucket 54: bucket 41: 20% bucket 25: 100% Sorting block of length 2581912 for bucket 25 (Using difference cover) bucket 27: 100% Sorting block of length 3604366 for bucket 27 (Using difference cover) bucket 23: 100% Sorting block of length 2494799 for bucket 23 (Using difference cover) bucket 51: 10% bucket 37: 30% Sorting block time: 00:00:01 Returning block of 816833 for bucket 4 Getting block 34 of 211 Reserving size (4887258) for bucket 34 Calculating Z arrays for bucket 34 Entering block accumulator loop for bucket 34: bucket 52: 10% bucket 29: 10% bucket 36: 40% bucket 43: 20% bucket 32: 40% bucket 26: 100% Sorting block of length 4370995 for bucket 26 (Using difference cover) bucket 28: 60% bucket 29: 50% bucket 34: 40% bucket 42: 20% bucket 28: 10% bucket 33: 40% bucket 46: 20% bucket 30: 50% bucket 30: 10% bucket 40: 30% bucket 44: 20% bucket 49: 20% bucket 39: 30% bucket 45: 20% bucket 53: 10% bucket 48: 20% bucket 37: 40% Sorting block time: 00:00:04 Returning block of 4083478 for bucket 6 Sorting block time: 00:00:03 Returning block of 4566352 for bucket 8 bucket 35: 40% bucket 47: 20% bucket 38: 40% bucket 32: 10% bucket 31: 10% bucket 31: 50% bucket 33: 10% Getting block 35 of 211 Reserving size (4887258) for bucket 35 Calculating Z arrays for bucket 35 Entering block accumulator loop for bucket 35: Getting block 36 of 211 Reserving size (4887258) for bucket 36 Calculating Z arrays for bucket 36 Entering block accumulator loop for bucket 36: bucket 52: 20% bucket 50: 20% Sorting block time: 00:00:02 Returning block of 2728704 for bucket 24 Sorting block time: 00:00:03 Returning block of 3567070 for bucket 15 bucket 36: 50% bucket 29: 60% Getting block 37 of 211 Reserving size (4887258) for bucket 37 Calculating Z arrays for bucket 37 Entering block accumulator loop for bucket 37: bucket 29: 20% bucket 41: 30% Getting block 38 of 211 Reserving size (4887258) for bucket 38 Calculating Z arrays for bucket 38 Entering block accumulator loop for bucket 38: bucket 54: 10% Sorting block time: 00:00:03 Returning block of 2799844 for bucket 22 Sorting block time: 00:00:03 Returning block of 2962830 for bucket 19 bucket 51: 20% bucket 35: 50% bucket 43: 30% bucket 28: 70% Getting block 39 of 211 Reserving size (4887258) for bucket 39 Calculating Z arrays for bucket 39 Entering block accumulator loop for bucket 39: bucket 34: 10% Getting block 40 of 211 Reserving size (4887258) for bucket 40 Calculating Z arrays for bucket 40 Entering block accumulator loop for bucket 40: bucket 32: 50% bucket 34: 50% bucket 40: 40% Sorting block time: 00:00:03 Returning block of 3425183 for bucket 7 bucket 33: 50% Sorting block time: 00:00:02 Returning block of 2591738 for bucket 18 Sorting block time: 00:00:03 Returning block of 3352071 for bucket 21 bucket 30: 60% bucket 28: 20% bucket 31: 60% bucket 42: 30% Getting block 41 of 211 Reserving size (4887258) for bucket 41 Calculating Z arrays for bucket 41 Entering block accumulator loop for bucket 41: Getting block 42 of 211 Reserving size (4887258) for bucket 42 Calculating Z arrays for bucket 42 Entering block accumulator loop for bucket 42: Getting block 43 of 211 Reserving size (4887258) for bucket 43 Calculating Z arrays for bucket 43 Entering block accumulator loop for bucket 43: bucket 30: 20% bucket 46: 30% Sorting block time: 00:00:02 Returning block of 2494800 for bucket 23 bucket 37: 50% bucket 38: 50% bucket 44: 30% bucket 39: 40% bucket 35: 10% Sorting block time: 00:00:04 Returning block of 3566387 for bucket 13 Getting block 44 of 211 Reserving size (4887258) for bucket 44 Calculating Z arrays for bucket 44 Entering block accumulator loop for bucket 44: bucket 35: 60% bucket 48: 30% bucket 45: 30% bucket 32: 20% bucket 49: 30% bucket 29: 30% bucket 36: 60% bucket 39: 10% Getting block 45 of 211 Reserving size (4887258) for bucket 45 Calculating Z arrays for bucket 45 Entering block accumulator loop for bucket 45: bucket 54: 20% bucket 33: 20% bucket 36: 10% bucket 47: 30% Sorting block time: 00:00:03 Returning block of 2581913 for bucket 25 bucket 53: 20% Sorting block time: 00:00:05 Returning block of 929666 for bucket 1 bucket 31: 20% Getting block 46 of 211 Reserving size (4887258) for bucket 46 Calculating Z arrays for bucket 46 Entering block accumulator loop for bucket 46: bucket 29: 70% Getting block 47 of 211 Reserving size (4887258) for bucket 47 Calculating Z arrays for bucket 47 Entering block accumulator loop for bucket 47: bucket 37: 10% bucket 38: 10% bucket 50: 30% Sorting block time: 00:00:04 Returning block of 4674816 for bucket 10 bucket 52: 30% bucket 41: 40% Getting block 48 of 211 Reserving size (4887258) for bucket 48 Calculating Z arrays for bucket 48 Entering block accumulator loop for bucket 48: bucket 28: 80% bucket 32: 60% bucket 40: 10% bucket 43: 40% bucket 34: 60% bucket 40: 50% bucket 34: 20% bucket 33: 60% bucket 51: 30% Sorting block time: 00:00:04 Returning block of 3753202 for bucket 17 Sorting block time: 00:00:04 Returning block of 3604367 for bucket 27 bucket 30: 70% bucket 31: 70% bucket 28: 30% Getting block 49 of 211 Reserving size (4887258) for bucket 49 Calculating Z arrays for bucket 49 Entering block accumulator loop for bucket 49: Getting block 50 of 211 Reserving size (4887258) for bucket 50 Calculating Z arrays for bucket 50 Entering block accumulator loop for bucket 50: bucket 30: 30% bucket 35: 20% bucket 43: 10% bucket 37: 60% bucket 38: 20% bucket 36: 70% bucket 42: 10% bucket 42: 40% Sorting block time: 00:00:05 Returning block of 4574046 for bucket 20 bucket 41: 10% bucket 38: 60% bucket 29: 40% Sorting block time: 00:00:05 Returning block of 4803052 for bucket 5 bucket 35: 70% bucket 46: 40% Sorting block time: 00:00:04 Returning block of 4370996 for bucket 26 bucket 39: 20% bucket 37: 20% bucket 32: 30% Getting block 51 of 211 Reserving size (4887258) for bucket 51 Calculating Z arrays for bucket 51 Entering block accumulator loop for bucket 51: bucket 49: 40% bucket 54: 30% Getting block 52 of 211 Reserving size (4887258) for bucket 52 Calculating Z arrays for bucket 52 Entering block accumulator loop for bucket 52: bucket 44: 40% bucket 39: 50% bucket 48: 40% bucket 36: 20% Getting block 53 of 211 Reserving size (4887258) for bucket 53 Calculating Z arrays for bucket 53 Entering block accumulator loop for bucket 53: bucket 33: 30% bucket 44: 10% bucket 29: 80% bucket 45: 40% bucket 31: 30% bucket 47: 10% bucket 45: 10% bucket 47: 40% bucket 46: 10% bucket 53: 30% bucket 28: 90% bucket 50: 40% bucket 32: 70% bucket 41: 50% bucket 48: 10% bucket 34: 70% bucket 40: 20% bucket 40: 60% bucket 43: 50% bucket 52: 40% bucket 33: 70% bucket 30: 40% bucket 34: 30% bucket 30: 80% bucket 31: 80% bucket 28: 40% bucket 51: 40% bucket 37: 70% bucket 50: 10% bucket 49: 10% bucket 35: 30% bucket 43: 20% bucket 36: 80% bucket 38: 30% bucket 29: 90% bucket 38: 70% bucket 29: 50% bucket 39: 30% bucket 42: 50% bucket 42: 20% bucket 37: 30% bucket 35: 80% bucket 41: 20% bucket 32: 40% bucket 46: 50% bucket 39: 60% bucket 51: 10% bucket 49: 50% bucket 52: 10% bucket 44: 50% bucket 33: 40% bucket 36: 30% Sorting block time: 00:00:08 Returning block of 4830828 for bucket 2 bucket 48: 50% bucket 31: 40% bucket 53: 10% bucket 54: 40% bucket 44: 20% bucket 45: 50% bucket 47: 50% bucket 45: 20% bucket 47: 20% bucket 28: 100% Sorting block of length 4187486 for bucket 28 (Using difference cover) bucket 46: 20% Getting block 54 of 211 Reserving size (4887258) for bucket 54 Calculating Z arrays for bucket 54 Entering block accumulator loop for bucket 54: bucket 32: 80% bucket 30: 50% bucket 40: 70% bucket 50: 50% bucket 41: 60% bucket 53: 40% bucket 33: 80% bucket 34: 80% bucket 39: 40% bucket 43: 60% bucket 48: 20% bucket 40: 30% bucket 30: 90% bucket 52: 50% bucket 28: 50% bucket 38: 40% bucket 34: 40% bucket 31: 90% bucket 50: 20% bucket 37: 80% bucket 45: 60% bucket 36: 90% bucket 29: 100% Sorting block of length 4466105 for bucket 29 (Using difference cover) bucket 38: 80% bucket 35: 40% bucket 29: 60% bucket 49: 20% bucket 51: 50% bucket 43: 30% bucket 35: 90% bucket 37: 40% bucket 42: 60% bucket 32: 50% bucket 39: 70% bucket 42: 30% bucket 41: 30% bucket 33: 50% bucket 31: 50% bucket 36: 40% bucket 46: 60% bucket 49: 60% bucket 52: 20% bucket 44: 60% bucket 48: 60% bucket 51: 20% bucket 44: 30% bucket 47: 60% bucket 32: 90% bucket 54: 50% bucket 30: 60% bucket 53: 20% bucket 46: 30% bucket 50: 30% bucket 40: 80% bucket 33: 90% bucket 34: 90% bucket 47: 30% bucket 45: 30% bucket 50: 60% bucket 54: 10% bucket 30: 100% bucket 39: 50% Sorting block of length 3751865 for bucket 30 (Using difference cover) bucket 48: 30% bucket 43: 70% bucket 37: 50% bucket 41: 70% bucket 31: 100% Sorting block of length 3330476 for bucket 31 (Using difference cover) bucket 53: 50% bucket 40: 40% bucket 37: 90% bucket 38: 50% bucket 36: 100% Sorting block of length 4701620 for bucket 36 (Using difference cover) bucket 34: 50% bucket 28: 60% bucket 38: 90% bucket 29: 70% bucket 35: 100% Sorting block of length 4533434 for bucket 35 (Using difference cover) bucket 52: 60% bucket 35: 50% bucket 45: 70% bucket 43: 40% bucket 49: 30% bucket 42: 40% bucket 32: 60% bucket 51: 60% bucket 39: 80% bucket 33: 60% bucket 42: 70% bucket 46: 70% bucket 31: 60% bucket 36: 50% bucket 44: 40% bucket 49: 70% bucket 41: 40% bucket 48: 70% bucket 52: 30% bucket 44: 70% bucket 51: 30% bucket 30: 70% bucket 33: 100% Sorting block of length 2847834 for bucket 33 (Using difference cover) bucket 47: 70% bucket 40: 90% bucket 32: 100% Sorting block of length 4066217 for bucket 32 (Using difference cover) bucket 38: 100% Sorting block of length 4209914 for bucket 38 (Using difference cover) bucket 34: 100% Sorting block of length 4385001 for bucket 34 (Using difference cover) bucket 54: 60% bucket 50: 40% bucket 47: 40% bucket 46: 40% bucket 53: 30% bucket 50: 70% bucket 45: 40% bucket 37: 60% bucket 48: 40% bucket 39: 60% bucket 43: 80% bucket 40: 50% bucket 37: 100% Sorting block of length 4854711 for bucket 37 (Using difference cover) bucket 41: 80% bucket 35: 60% bucket 54: 20% bucket 38: 60% bucket 34: 60% bucket 53: 60% bucket 29: 80% bucket 28: 70% Sorting block time: 00:00:04 Returning block of 4187487 for bucket 28 bucket 32: 70% bucket 43: 50% Getting block 55 of 207 Reserving size (4887258) for bucket 55 Calculating Z arrays for bucket 55 Entering block accumulator loop for bucket 55: bucket 49: 40% bucket 42: 50% bucket 52: 70% bucket 45: 80% bucket 33: 70% bucket 39: 90% bucket 51: 70% bucket 31: 70% bucket 36: 60% bucket 42: 80% bucket 44: 50% bucket 46: 80% bucket 44: 80% Sorting block time: 00:00:03 Returning block of 4466106 for bucket 29 bucket 41: 50% bucket 48: 80% bucket 49: 80% bucket 30: 80% bucket 40: 60% bucket 35: 70% bucket 52: 40% bucket 51: 40% bucket 47: 50% bucket 40: 100% Sorting block of length 3925316 for bucket 40 (Using difference cover) Getting block 56 of 207 Reserving size (4887258) for bucket 56 Calculating Z arrays for bucket 56 Entering block accumulator loop for bucket 56: Sorting block time: 00:00:03 Returning block of 3330477 for bucket 31 bucket 47: 80% bucket 50: 50% Getting block 57 of 207 Reserving size (4887258) for bucket 57 Calculating Z arrays for bucket 57 Entering block accumulator loop for bucket 57: bucket 46: 50% bucket 37: 70% bucket 39: 70% bucket 43: 90% bucket 50: 80% bucket 54: 30% bucket 45: 50% bucket 48: 50% bucket 38: 70% bucket 53: 40% bucket 41: 90% bucket 54: 70% bucket 29: 90% bucket 34: 70% bucket 39: 100% Sorting block of length 3862064 for bucket 39 (Using difference cover) bucket 32: 80% bucket 28: 80% bucket 43: 60% Sorting block time: 00:00:03 Returning block of 2847835 for bucket 33 Sorting block time: 00:00:04 Returning block of 3751866 for bucket 30 bucket 53: 70% bucket 42: 60% bucket 33: 80% bucket 49: 50% Getting block 58 of 207 Reserving size (4887258) for bucket 58 Calculating Z arrays for bucket 58 Entering block accumulator loop for bucket 58: bucket 55: 10% Getting block 59 of 207 Reserving size (4887258) for bucket 59 Calculating Z arrays for bucket 59 Entering block accumulator loop for bucket 59: bucket 31: 80% bucket 47: 60% bucket 52: 80% bucket 45: 90% bucket 36: 70% bucket 51: 80% bucket 42: 90% bucket 40: 70% bucket 44: 90% bucket 30: 90% bucket 44: 60% bucket 46: 90% bucket 51: 50% bucket 35: 80% bucket 48: 90% bucket 52: 50% bucket 41: 60% Sorting block time: 00:00:04 Returning block of 4701621 for bucket 36 bucket 49: 90% bucket 47: 90% bucket 50: 60% bucket 56: 10% Getting block 60 of 207 Reserving size (4887258) for bucket 60 Calculating Z arrays for bucket 60 Entering block accumulator loop for bucket 60: Sorting block time: 00:00:04 Returning block of 4533435 for bucket 35 bucket 46: 60% bucket 37: 80% bucket 57: 10% bucket 43: 100% Sorting block of length 2583631 for bucket 43 (Using difference cover) bucket 54: 40% bucket 39: 80% bucket 45: 60% bucket 38: 80% bucket 50: 90% bucket 41: 100% Sorting block of length 4411498 for bucket 41 (Using difference cover) bucket 29: 100% Sorting block of length 954052 for bucket 29 (Using difference cover) bucket 48: 60% Getting block 61 of 207 Reserving size (4887258) for bucket 61 Calculating Z arrays for bucket 61 Entering block accumulator loop for bucket 61: bucket 53: 50% bucket 34: 80% bucket 54: 80% bucket 32: 90% bucket 28: 90% bucket 43: 70% Sorting block time: 00:00:04 Returning block of 4066218 for bucket 32 bucket 33: 90% bucket 42: 70% bucket 31: 90% bucket 49: 60% Getting block 62 of 207 Reserving size (4887258) for bucket 62 Calculating Z arrays for bucket 62 Entering block accumulator loop for bucket 62: bucket 47: 70% bucket 36: 80% bucket 55: 20% bucket 58: 10% bucket 53: 80% bucket 45: 100% Sorting block of length 3818506 for bucket 45 (Using difference cover) bucket 52: 90% bucket 59: 10% bucket 42: 100% Sorting block of length 3992688 for bucket 42 (Using difference cover) bucket 51: 90% bucket 30: 100% Sorting block of length 3970385 for bucket 30 (Using difference cover) bucket 40: 80% Sorting block time: 00:00:01 Returning block of 954053 for bucket 29 bucket 35: 90% bucket 44: 70% Getting block 55 of 211 Reserving size (4887258) for bucket 55 Calculating Z arrays for bucket 55 Entering block accumulator loop for bucket 55: bucket 44: 100% Sorting block of length 4843891 for bucket 44 (Using difference cover) bucket 46: 100% Sorting block of length 2239464 for bucket 46 (Using difference cover) bucket 51: 60% Sorting block time: 00:00:05 Returning block of 4385002 for bucket 34 bucket 48: 100% Sorting block of length 3313016 for bucket 48 (Using difference cover) bucket 52: 60% bucket 41: 70% bucket 54: 90% bucket 49: 100% Sorting block of length 2061790 for bucket 49 (Using difference cover) Getting block 63 of 207 Reserving size (4887258) for bucket 63 Calculating Z arrays for bucket 63 Entering block accumulator loop for bucket 63: bucket 50: 70% bucket 47: 100% Sorting block of length 2855687 for bucket 47 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4209915 for bucket 38 bucket 37: 90% bucket 46: 70% bucket 60: 10% bucket 61: 10% bucket 39: 90% bucket 56: 20% bucket 38: 90% bucket 54: 50% bucket 57: 20% Getting block 64 of 207 Reserving size (4887258) for bucket 64 Calculating Z arrays for bucket 64 Entering block accumulator loop for bucket 64: bucket 45: 70% bucket 48: 70% bucket 34: 90% bucket 50: 100% Sorting block of length 4243459 for bucket 50 (Using difference cover) bucket 53: 60% bucket 32: 100% Sorting block of length 3550345 for bucket 32 (Using difference cover) Sorting block time: 00:00:03 Returning block of 3925317 for bucket 40 bucket 33: 100% Sorting block of length 4418115 for bucket 33 (Using difference cover) Getting block 65 of 207 Reserving size (4887258) for bucket 65 Calculating Z arrays for bucket 65 Entering block accumulator loop for bucket 65: bucket 43: 80% bucket 28: 100% Sorting block of length 4023103 for bucket 28 (Using difference cover) bucket 31: 100% Sorting block of length 4064182 for bucket 31 (Using difference cover) bucket 42: 80% bucket 62: 10% Sorting block time: 00:00:02 Returning block of 2583632 for bucket 43 bucket 49: 70% bucket 47: 80% bucket 36: 90% Getting block 66 of 207 Reserving size (4887258) for bucket 66 Calculating Z arrays for bucket 66 Entering block accumulator loop for bucket 66: bucket 40: 90% bucket 55: 30% bucket 51: 100% Sorting block of length 4385302 for bucket 51 (Using difference cover) bucket 58: 20% bucket 35: 100% Sorting block of length 3451690 for bucket 35 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3862065 for bucket 39 bucket 52: 100% Sorting block of length 4443944 for bucket 52 (Using difference cover) bucket 44: 80% bucket 55: 10% bucket 53: 90% bucket 59: 20% bucket 51: 70% bucket 63: 10% bucket 41: 80% Getting block 67 of 207 Reserving size (4887258) for bucket 67 Calculating Z arrays for bucket 67 Entering block accumulator loop for bucket 67: bucket 52: 70% bucket 54: 100% Sorting block of length 3007643 for bucket 54 (Using difference cover) bucket 50: 80% bucket 37: 100% Sorting block of length 3701310 for bucket 37 (Using difference cover) bucket 61: 20% bucket 46: 80% bucket 64: 10% bucket 38: 100% Sorting block of length 1986403 for bucket 38 (Using difference cover) bucket 39: 100% Sorting block of length 4648001 for bucket 39 (Using difference cover) bucket 34: 100% Sorting block of length 2315272 for bucket 34 (Using difference cover) bucket 54: 60% bucket 48: 80% bucket 45: 80% bucket 60: 20% bucket 57: 30% bucket 56: 30% bucket 53: 70% Sorting block time: 00:00:07 Returning block of 4854712 for bucket 37 Sorting block time: 00:00:02 Returning block of 2061791 for bucket 49 bucket 49: 80% bucket 65: 10% Getting block 68 of 207 Reserving size (4887258) for bucket 68 Calculating Z arrays for bucket 68 Entering block accumulator loop for bucket 68: bucket 43: 90% Getting block 69 of 207 Reserving size (4887258) for bucket 69 Calculating Z arrays for bucket 69 Entering block accumulator loop for bucket 69: bucket 62: 20% bucket 42: 90% bucket 66: 10% Sorting block time: 00:00:02 Returning block of 2239465 for bucket 46 bucket 36: 100% Sorting block of length 4464037 for bucket 36 (Using difference cover) bucket 47: 90% Getting block 70 of 207 Reserving size (4887258) for bucket 70 Calculating Z arrays for bucket 70 Entering block accumulator loop for bucket 70: bucket 40: 100% Sorting block of length 4132933 for bucket 40 (Using difference cover) bucket 55: 40% bucket 67: 10% bucket 44: 90% bucket 63: 20% bucket 58: 30% bucket 41: 90% Sorting block time: 00:00:03 Returning block of 2855688 for bucket 47 bucket 51: 80% bucket 52: 80% bucket 53: 100% Sorting block of length 3108137 for bucket 53 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4411499 for bucket 41 Getting block 71 of 207 Reserving size (4887258) for bucket 71 Calculating Z arrays for bucket 71 Entering block accumulator loop for bucket 71: Sorting block time: 00:00:04 Returning block of 3818507 for bucket 45 bucket 61: 30% Sorting block time: 00:00:04 Returning block of 3970386 for bucket 30 bucket 50: 90% Sorting block time: 00:00:03 Returning block of 3313017 for bucket 48 bucket 64: 20% bucket 46: 90% bucket 55: 20% Getting block 72 of 207 Reserving size (4887258) for bucket 72 Calculating Z arrays for bucket 72 Entering block accumulator loop for bucket 72: Getting block 73 of 207 Reserving size (4887258) for bucket 73 Calculating Z arrays for bucket 73 Entering block accumulator loop for bucket 73: Getting block 56 of 211 Reserving size (4887258) for bucket 56 Calculating Z arrays for bucket 56 Entering block accumulator loop for bucket 56: Getting block 74 of 207 Reserving size (4887258) for bucket 74 Calculating Z arrays for bucket 74 Entering block accumulator loop for bucket 74: bucket 49: 90% bucket 45: 90% bucket 54: 70% bucket 48: 90% bucket 68: 10% Sorting block time: 00:00:04 Returning block of 3992689 for bucket 42 bucket 65: 20% bucket 59: 30% bucket 57: 40% bucket 60: 30% bucket 56: 40% Getting block 75 of 207 Reserving size (4887258) for bucket 75 Calculating Z arrays for bucket 75 Entering block accumulator loop for bucket 75: bucket 53: 80% bucket 69: 10% bucket 62: 30% bucket 43: 100% Sorting block of length 4735443 for bucket 43 (Using difference cover) bucket 66: 20% Sorting block time: 00:00:04 Returning block of 3550346 for bucket 32 Sorting block time: 00:00:02 Returning block of 2315273 for bucket 34 bucket 42: 100% Sorting block of length 2341108 for bucket 42 (Using difference cover) Getting block 57 of 211 Reserving size (4887258) for bucket 57 Calculating Z arrays for bucket 57 Entering block accumulator loop for bucket 57: Sorting block time: 00:00:02 Returning block of 1986404 for bucket 38 Getting block 58 of 211 Reserving size (4887258) for bucket 58 Calculating Z arrays for bucket 58 Entering block accumulator loop for bucket 58: bucket 70: 10% bucket 47: 100% Sorting block of length 790923 for bucket 47 (Using difference cover) Getting block 59 of 211 Reserving size (4887258) for bucket 59 Calculating Z arrays for bucket 59 Entering block accumulator loop for bucket 59: Sorting block time: 00:00:04 Returning block of 4843892 for bucket 44 bucket 63: 30% Sorting block time: 00:00:03 Returning block of 4064183 for bucket 31 bucket 67: 20% bucket 44: 100% Sorting block of length 4511822 for bucket 44 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4243460 for bucket 50 bucket 55: 50% bucket 41: 100% Sorting block of length 4536291 for bucket 41 (Using difference cover) Getting block 60 of 211 Reserving size (4887258) for bucket 60 Calculating Z arrays for bucket 60 Entering block accumulator loop for bucket 60: Getting block 76 of 207 Reserving size (4887258) for bucket 76 Calculating Z arrays for bucket 76 Entering block accumulator loop for bucket 76: bucket 51: 90% bucket 52: 90% Sorting block time: 00:00:04 Returning block of 3007644 for bucket 54 bucket 71: 10% bucket 61: 40% Getting block 77 of 207 Reserving size (4887258) for bucket 77 Calculating Z arrays for bucket 77 Entering block accumulator loop for bucket 77: Sorting block time: 00:00:04 Returning block of 3451691 for bucket 35 bucket 46: 100% Sorting block of length 4425420 for bucket 46 (Using difference cover) bucket 58: 40% bucket 64: 30% Getting block 78 of 207 Reserving size (4887258) for bucket 78 Calculating Z arrays for bucket 78 Entering block accumulator loop for bucket 78: Getting block 61 of 211 Reserving size (4887258) for bucket 61 Calculating Z arrays for bucket 61 Entering block accumulator loop for bucket 61: bucket 50: 100% Sorting block of length 2818768 for bucket 50 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4023104 for bucket 28 Sorting block time: 00:00:01 Returning block of 790924 for bucket 47 bucket 72: 10% Getting block 62 of 211 Reserving size (4887258) for bucket 62 Calculating Z arrays for bucket 62 Entering block accumulator loop for bucket 62: bucket 73: 10% bucket 55: 30% bucket 74: 10% bucket 56: 10% bucket 48: 100% Sorting block of length 4586098 for bucket 48 (Using difference cover) Getting block 63 of 211 Reserving size (4887258) for bucket 63 Calculating Z arrays for bucket 63 Entering block accumulator loop for bucket 63: bucket 45: 100% Sorting block of length 1993811 for bucket 45 (Using difference cover) bucket 54: 80% bucket 65: 30% Sorting block time: 00:00:03 Returning block of 3701311 for bucket 37 bucket 68: 20% bucket 49: 100% Sorting block of length 2191747 for bucket 49 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4418116 for bucket 33 bucket 75: 10% Getting block 64 of 211 Reserving size (4887258) for bucket 64 Calculating Z arrays for bucket 64 Entering block accumulator loop for bucket 64: bucket 69: 20% bucket 57: 50% Getting block 65 of 211 Reserving size (4887258) for bucket 65 Calculating Z arrays for bucket 65 Entering block accumulator loop for bucket 65: bucket 56: 50% bucket 59: 40% bucket 60: 40% bucket 66: 30% bucket 62: 40% bucket 53: 90% bucket 57: 10% bucket 58: 10% bucket 70: 20% Sorting block time: 00:00:05 Returning block of 4443945 for bucket 52 bucket 59: 10% bucket 63: 40% Getting block 79 of 207 Reserving size (4887258) for bucket 79 Calculating Z arrays for bucket 79 Entering block accumulator loop for bucket 79: bucket 67: 30% Sorting block time: 00:00:03 Returning block of 3108138 for bucket 53 bucket 76: 10% bucket 77: 10% Sorting block time: 00:00:02 Returning block of 2341109 for bucket 42 bucket 61: 50% bucket 55: 60% Getting block 80 of 207 Reserving size (4887258) for bucket 80 Calculating Z arrays for bucket 80 Entering block accumulator loop for bucket 80: bucket 51: 100% Sorting block of length 4722674 for bucket 51 (Using difference cover) Getting block 66 of 211 Reserving size (4887258) for bucket 66 Calculating Z arrays for bucket 66 Entering block accumulator loop for bucket 66: bucket 64: 40% bucket 60: 10% Sorting block time: 00:00:04 Returning block of 4648002 for bucket 39 Sorting block time: 00:00:05 Returning block of 4385303 for bucket 51 bucket 78: 10% Sorting block time: 00:00:03 Returning block of 4132934 for bucket 40 bucket 71: 20% bucket 52: 100% Sorting block of length 2898961 for bucket 52 (Using difference cover) bucket 58: 50% Getting block 67 of 211 Reserving size (4887258) for bucket 67 Calculating Z arrays for bucket 67 Entering block accumulator loop for bucket 67: Getting block 68 of 211 Reserving size (4887258) for bucket 68 Calculating Z arrays for bucket 68 Entering block accumulator loop for bucket 68: bucket 61: 10% bucket 72: 20% Getting block 81 of 207 Reserving size (4887258) for bucket 81 Calculating Z arrays for bucket 81 Entering block accumulator loop for bucket 81: bucket 62: 10% bucket 74: 20% bucket 69: 30% bucket 65: 40% bucket 56: 20% bucket 55: 40% bucket 68: 30% bucket 63: 10% bucket 54: 90% Sorting block time: 00:00:02 Returning block of 1993812 for bucket 45 bucket 73: 20% bucket 75: 20% Getting block 69 of 211 Reserving size (4887258) for bucket 69 Calculating Z arrays for bucket 69 Entering block accumulator loop for bucket 69: bucket 64: 10% bucket 66: 40% bucket 57: 60% Sorting block time: 00:00:05 Returning block of 4464038 for bucket 36 bucket 65: 10% bucket 62: 50% bucket 60: 50% bucket 56: 60% bucket 59: 50% bucket 53: 100% Sorting block of length 3781438 for bucket 53 (Using difference cover) Getting block 70 of 211 Reserving size (4887258) for bucket 70 Calculating Z arrays for bucket 70 Entering block accumulator loop for bucket 70: Sorting block time: 00:00:02 Returning block of 2191748 for bucket 49 bucket 70: 30% bucket 57: 20% bucket 58: 20% bucket 63: 50% bucket 79: 10% Getting block 71 of 211 Reserving size (4887258) for bucket 71 Calculating Z arrays for bucket 71 Entering block accumulator loop for bucket 71: bucket 59: 20% Sorting block time: 00:00:02 Returning block of 2818769 for bucket 50 bucket 67: 40% bucket 76: 20% Getting block 72 of 211 Reserving size (4887258) for bucket 72 Calculating Z arrays for bucket 72 Entering block accumulator loop for bucket 72: bucket 77: 20% bucket 61: 60% bucket 80: 10% bucket 64: 50% bucket 78: 20% bucket 55: 70% bucket 66: 10% bucket 71: 30% bucket 81: 10% bucket 65: 50% bucket 60: 20% bucket 69: 40% bucket 67: 10% bucket 61: 20% bucket 58: 60% bucket 74: 30% bucket 68: 10% bucket 72: 30% bucket 62: 20% bucket 68: 40% bucket 69: 10% bucket 55: 50% bucket 56: 30% bucket 54: 100% Sorting block of length 3908388 for bucket 54 (Using difference cover) bucket 73: 30% bucket 63: 20% bucket 66: 50% bucket 75: 30% bucket 67: 50% Sorting block time: 00:00:04 Returning block of 4735444 for bucket 43 bucket 62: 60% bucket 64: 20% Sorting block time: 00:00:05 Returning block of 4536292 for bucket 41 bucket 77: 30% Sorting block time: 00:00:05 Returning block of 4511823 for bucket 44 bucket 65: 20% Getting block 73 of 211 Reserving size (4887258) for bucket 73 Calculating Z arrays for bucket 73 Entering block accumulator loop for bucket 73: bucket 57: 70% Getting block 74 of 211 Reserving size (4887258) for bucket 74 Calculating Z arrays for bucket 74 Entering block accumulator loop for bucket 74: bucket 79: 20% Sorting block time: 00:00:04 Returning block of 4425421 for bucket 46 Getting block 75 of 211 Reserving size (4887258) for bucket 75 Calculating Z arrays for bucket 75 Entering block accumulator loop for bucket 75: bucket 70: 40% bucket 60: 60% Sorting block time: 00:00:04 Returning block of 4586099 for bucket 48 bucket 56: 70% bucket 59: 60% bucket 57: 30% bucket 63: 60% bucket 76: 30% Getting block 76 of 211 Reserving size (4887258) for bucket 76 Calculating Z arrays for bucket 76 Entering block accumulator loop for bucket 76: Getting block 77 of 211 Reserving size (4887258) for bucket 77 Calculating Z arrays for bucket 77 Entering block accumulator loop for bucket 77: bucket 59: 30% bucket 61: 70% bucket 58: 30% bucket 80: 20% bucket 70: 10% bucket 66: 20% bucket 71: 10% Sorting block time: 00:00:03 Returning block of 2898962 for bucket 52 bucket 78: 30% bucket 72: 10% bucket 64: 60% Getting block 78 of 211 Reserving size (4887258) for bucket 78 Calculating Z arrays for bucket 78 Entering block accumulator loop for bucket 78: bucket 71: 40% bucket 69: 50% bucket 81: 20% bucket 65: 60% bucket 55: 80% bucket 73: 40% bucket 75: 40% bucket 74: 40% bucket 60: 30% bucket 62: 30% bucket 68: 50% bucket 66: 60% bucket 72: 40% bucket 67: 60% bucket 74: 10% bucket 61: 30% bucket 58: 70% bucket 69: 20% bucket 56: 40% bucket 63: 30% bucket 55: 60% bucket 68: 20% bucket 62: 70% bucket 67: 20% bucket 77: 40% bucket 60: 70% Sorting block time: 00:00:04 Returning block of 4722675 for bucket 51 bucket 64: 30% bucket 79: 30% bucket 57: 40% bucket 70: 50% bucket 57: 80% bucket 76: 40% Getting block 79 of 211 Reserving size (4887258) for bucket 79 Calculating Z arrays for bucket 79 Entering block accumulator loop for bucket 79: bucket 63: 70% bucket 65: 30% bucket 75: 10% bucket 73: 10% bucket 61: 80% bucket 80: 30% bucket 55: 90% bucket 59: 70% bucket 76: 10% Sorting block time: 00:00:04 Returning block of 3781439 for bucket 53 bucket 70: 20% bucket 78: 40% bucket 56: 80% bucket 77: 10% bucket 58: 40% bucket 66: 30% Getting block 80 of 211 Reserving size (4887258) for bucket 80 Calculating Z arrays for bucket 80 Entering block accumulator loop for bucket 80: bucket 59: 40% bucket 71: 50% bucket 64: 70% bucket 63: 40% bucket 69: 60% bucket 71: 20% bucket 65: 70% bucket 78: 10% bucket 75: 50% bucket 72: 20% bucket 73: 50% bucket 81: 30% bucket 74: 50% bucket 66: 70% bucket 57: 50% bucket 67: 70% bucket 74: 20% bucket 62: 40% bucket 68: 60% bucket 72: 50% bucket 58: 80% bucket 77: 50% bucket 69: 30% bucket 61: 40% bucket 60: 40% bucket 56: 50% bucket 62: 80% bucket 55: 70% bucket 75: 20% bucket 79: 40% bucket 76: 50% bucket 68: 30% Sorting block time: 00:00:04 Returning block of 3908389 for bucket 54 bucket 70: 60% bucket 67: 30% bucket 63: 80% bucket 60: 80% bucket 61: 90% Getting block 81 of 211 Reserving size (4887258) for bucket 81 Calculating Z arrays for bucket 81 Entering block accumulator loop for bucket 81: bucket 57: 90% bucket 79: 10% bucket 64: 40% bucket 78: 50% bucket 80: 40% bucket 63: 50% bucket 65: 40% bucket 55: 100% Sorting block of length 3738073 for bucket 55 (Using difference cover) bucket 69: 70% bucket 73: 20% bucket 76: 20% bucket 59: 80% bucket 64: 80% bucket 71: 60% bucket 66: 40% bucket 59: 50% bucket 80: 10% bucket 66: 80% bucket 58: 50% bucket 65: 80% bucket 77: 20% bucket 56: 90% bucket 70: 30% bucket 81: 40% bucket 75: 60% bucket 72: 60% bucket 67: 80% bucket 73: 60% bucket 71: 30% bucket 74: 60% bucket 57: 60% bucket 78: 20% bucket 72: 30% bucket 62: 50% bucket 74: 30% bucket 68: 70% bucket 62: 90% bucket 77: 60% bucket 79: 50% bucket 58: 90% bucket 60: 50% bucket 76: 60% bucket 56: 60% bucket 75: 30% bucket 69: 40% bucket 66: 50% bucket 55: 80% bucket 63: 90% bucket 61: 50% bucket 70: 70% bucket 81: 10% bucket 69: 80% bucket 61: 100% Sorting block of length 3889264 for bucket 61 (Using difference cover) bucket 68: 40% bucket 63: 60% bucket 78: 60% bucket 80: 50% bucket 67: 40% bucket 60: 90% bucket 65: 50% bucket 57: 100% Sorting block of length 686473 for bucket 57 (Using difference cover) bucket 64: 50% bucket 79: 20% bucket 71: 70% bucket 66: 90% bucket 64: 90% bucket 65: 90% bucket 59: 60% bucket 81: 50% bucket 76: 30% bucket 59: 90% bucket 73: 30% bucket 80: 20% bucket 58: 60% bucket 72: 70% bucket 75: 70% bucket 67: 90% bucket 77: 30% bucket 73: 70% bucket 70: 40% bucket 74: 70% bucket 56: 100% Sorting block of length 4315389 for bucket 56 (Using difference cover) bucket 60: 60% bucket 57: 70% bucket 68: 80% Sorting block time: 00:00:01 Returning block of 686474 for bucket 57 bucket 71: 40% Getting block 82 of 207 Reserving size (4887258) for bucket 82 Calculating Z arrays for bucket 82 Entering block accumulator loop for bucket 82: bucket 62: 100% Sorting block of length 4555867 for bucket 62 (Using difference cover) bucket 62: 60% bucket 79: 60% bucket 72: 40% bucket 78: 30% bucket 76: 70% bucket 74: 40% bucket 77: 70% bucket 56: 70% bucket 66: 60% bucket 58: 100% Sorting block of length 4439885 for bucket 58 (Using difference cover) bucket 69: 50% bucket 63: 100% Sorting block of length 2385580 for bucket 63 (Using difference cover) bucket 70: 80% bucket 75: 40% bucket 55: 90% bucket 81: 20% bucket 69: 90% bucket 78: 70% bucket 68: 50% bucket 61: 60% bucket 80: 60% bucket 63: 70% bucket 67: 50% bucket 77: 40% bucket 71: 80% bucket 65: 100% Sorting block of length 4249867 for bucket 65 (Using difference cover) bucket 64: 100% Sorting block of length 3877329 for bucket 64 (Using difference cover) bucket 64: 60% bucket 81: 60% bucket 66: 100% Sorting block of length 1649907 for bucket 66 (Using difference cover) bucket 60: 100% Sorting block of length 2044132 for bucket 60 (Using difference cover) bucket 65: 60% bucket 67: 100% Sorting block of length 4841139 for bucket 67 (Using difference cover) bucket 79: 30% bucket 75: 80% bucket 80: 30% bucket 59: 70% bucket 73: 80% bucket 58: 70% bucket 76: 40% bucket 57: 80% bucket 76: 80% bucket 74: 80% bucket 59: 100% Sorting block of length 4544515 for bucket 59 (Using difference cover) bucket 72: 80% Sorting block time: 00:00:04 Returning block of 3738074 for bucket 55 bucket 73: 40% bucket 68: 90% bucket 70: 50% bucket 79: 70% Getting block 83 of 207 Reserving size (4887258) for bucket 83 Calculating Z arrays for bucket 83 Entering block accumulator loop for bucket 83: bucket 60: 70% bucket 82: 10% bucket 62: 70% bucket 69: 60% bucket 77: 80% bucket 55: 100% Sorting block of length 3185654 for bucket 55 (Using difference cover) bucket 71: 50% bucket 72: 50% bucket 74: 50% bucket 78: 40% bucket 68: 60% bucket 66: 70% bucket 69: 100% Sorting block of length 3927698 for bucket 69 (Using difference cover) bucket 78: 80% bucket 70: 90% bucket 56: 80% bucket 75: 50% bucket 80: 70% bucket 81: 30% bucket 57: 90% bucket 63: 80% Sorting block time: 00:00:03 Returning block of 3889265 for bucket 61 bucket 71: 90% bucket 61: 70% bucket 74: 90% bucket 81: 70% Getting block 84 of 207 Reserving size (4887258) for bucket 84 Calculating Z arrays for bucket 84 Entering block accumulator loop for bucket 84: bucket 67: 60% bucket 77: 50% bucket 64: 70% bucket 75: 90% Sorting block time: 00:00:03 Returning block of 2385581 for bucket 63 bucket 76: 90% bucket 59: 80% bucket 65: 70% bucket 73: 90% Getting block 85 of 207 Reserving size (4887258) for bucket 85 Calculating Z arrays for bucket 85 Entering block accumulator loop for bucket 85: bucket 80: 40% bucket 68: 100% Sorting block of length 3846609 for bucket 68 (Using difference cover) bucket 79: 40% bucket 79: 80% bucket 58: 80% bucket 72: 90% bucket 76: 50% bucket 82: 20% Sorting block time: 00:00:02 Returning block of 1649908 for bucket 66 Sorting block time: 00:00:03 Returning block of 4555868 for bucket 62 bucket 73: 50% bucket 83: 10% bucket 60: 80% Getting block 86 of 207 Reserving size (4887258) for bucket 86 Calculating Z arrays for bucket 86 Entering block accumulator loop for bucket 86: bucket 70: 60% bucket 62: 80% bucket 77: 90% Getting block 87 of 207 Reserving size (4887258) for bucket 87 Calculating Z arrays for bucket 87 Entering block accumulator loop for bucket 87: bucket 69: 70% bucket 63: 90% bucket 78: 90% bucket 71: 60% bucket 70: 100% Sorting block of length 4559440 for bucket 70 (Using difference cover) bucket 72: 60% bucket 66: 80% bucket 74: 60% bucket 74: 100% Sorting block of length 3827117 for bucket 74 (Using difference cover) bucket 75: 60% bucket 78: 50% bucket 80: 80% bucket 56: 90% bucket 68: 70% bucket 84: 10% Sorting block time: 00:00:03 Returning block of 2044133 for bucket 60 bucket 57: 100% Sorting block of length 4120922 for bucket 57 (Using difference cover) bucket 81: 80% bucket 71: 100% Sorting block of length 1796249 for bucket 71 (Using difference cover) Getting block 88 of 207 Reserving size (4887258) for bucket 88 Calculating Z arrays for bucket 88 Entering block accumulator loop for bucket 88: bucket 81: 40% bucket 61: 80% bucket 76: 100% Sorting block of length 2130252 for bucket 76 (Using difference cover) bucket 75: 100% Sorting block of length 3329581 for bucket 75 (Using difference cover) bucket 65: 80% Sorting block time: 00:00:04 Returning block of 4315390 for bucket 56 bucket 77: 60% bucket 87: 10% bucket 67: 70% bucket 73: 100% Sorting block of length 1725406 for bucket 73 (Using difference cover) bucket 79: 90% bucket 64: 80% bucket 85: 10% Getting block 89 of 207 Reserving size (4887258) for bucket 89 Calculating Z arrays for bucket 89 Entering block accumulator loop for bucket 89: bucket 59: 90% Sorting block time: 00:00:03 Returning block of 3877330 for bucket 64 bucket 80: 50% bucket 72: 100% Sorting block of length 3869889 for bucket 72 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4841140 for bucket 67 bucket 82: 30% Getting block 90 of 207 Reserving size (4887258) for bucket 90 Calculating Z arrays for bucket 90 Entering block accumulator loop for bucket 90: bucket 76: 60% bucket 58: 90% bucket 79: 50% bucket 77: 100% Sorting block of length 4858985 for bucket 77 (Using difference cover) Getting block 91 of 207 Reserving size (4887258) for bucket 91 Calculating Z arrays for bucket 91 Entering block accumulator loop for bucket 91: bucket 83: 20% bucket 62: 90% bucket 86: 10% bucket 60: 90% Sorting block time: 00:00:03 Returning block of 3185655 for bucket 55 bucket 73: 60% bucket 78: 100% Sorting block of length 3497578 for bucket 78 (Using difference cover) bucket 69: 80% Getting block 82 of 211 Reserving size (4887258) for bucket 82 Calculating Z arrays for bucket 82 Entering block accumulator loop for bucket 82: bucket 63: 100% Sorting block of length 4210894 for bucket 63 (Using difference cover) bucket 66: 90% bucket 70: 70% Sorting block time: 00:00:03 Returning block of 3927699 for bucket 69 bucket 71: 70% bucket 80: 90% Getting block 92 of 207 Reserving size (4887258) for bucket 92 Calculating Z arrays for bucket 92 Entering block accumulator loop for bucket 92: bucket 74: 70% bucket 81: 90% bucket 72: 70% bucket 61: 90% bucket 84: 20% bucket 75: 70% bucket 68: 80% Sorting block time: 00:00:01 Returning block of 2130253 for bucket 76 bucket 78: 60% Sorting block time: 00:00:05 Returning block of 4439886 for bucket 58 Getting block 93 of 207 Reserving size (4887258) for bucket 93 Calculating Z arrays for bucket 93 Entering block accumulator loop for bucket 93: bucket 88: 10% bucket 56: 100% Sorting block of length 1903399 for bucket 56 (Using difference cover) bucket 81: 50% Sorting block time: 00:00:02 Returning block of 1796250 for bucket 71 Getting block 94 of 207 Reserving size (4887258) for bucket 94 Calculating Z arrays for bucket 94 Entering block accumulator loop for bucket 94: bucket 65: 90% Getting block 95 of 207 Reserving size (4887258) for bucket 95 Calculating Z arrays for bucket 95 Entering block accumulator loop for bucket 95: bucket 79: 100% Sorting block of length 3485954 for bucket 79 (Using difference cover) bucket 87: 20% bucket 67: 80% Sorting block time: 00:00:03 Returning block of 3846610 for bucket 68 Sorting block time: 00:00:02 Returning block of 1725407 for bucket 73 bucket 77: 70% bucket 64: 90% bucket 85: 20% bucket 89: 10% bucket 59: 100% Sorting block of length 4754309 for bucket 59 (Using difference cover) Getting block 96 of 207 Reserving size (4887258) for bucket 96 Calculating Z arrays for bucket 96 Entering block accumulator loop for bucket 96: bucket 62: 100% Sorting block of length 1058927 for bucket 62 (Using difference cover) bucket 82: 40% Getting block 97 of 207 Reserving size (4887258) for bucket 97 Calculating Z arrays for bucket 97 Entering block accumulator loop for bucket 97: bucket 81: 100% Sorting block of length 4664785 for bucket 81 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4544516 for bucket 59 bucket 80: 60% bucket 90: 10% bucket 91: 10% Sorting block time: 00:00:05 Returning block of 4249868 for bucket 65 bucket 83: 30% bucket 76: 70% Getting block 98 of 207 Reserving size (4887258) for bucket 98 Calculating Z arrays for bucket 98 Entering block accumulator loop for bucket 98: bucket 86: 20% bucket 58: 100% Sorting block of length 1718813 for bucket 58 (Using difference cover) bucket 79: 60% Getting block 99 of 207 Reserving size (4887258) for bucket 99 Calculating Z arrays for bucket 99 Entering block accumulator loop for bucket 99: bucket 69: 90% bucket 60: 100% Sorting block of length 3769902 for bucket 60 (Using difference cover) bucket 73: 70% bucket 66: 100% Sorting block of length 4515453 for bucket 66 (Using difference cover) bucket 80: 100% Sorting block of length 4402934 for bucket 80 (Using difference cover) bucket 75: 80% bucket 82: 10% bucket 92: 10% bucket 71: 80% bucket 68: 90% Sorting block time: 00:00:03 Returning block of 3329582 for bucket 75 bucket 70: 80% bucket 74: 80% Sorting block time: 00:00:01 Returning block of 1058928 for bucket 62 bucket 93: 10% bucket 84: 30% bucket 72: 80% Getting block 83 of 211 Reserving size (4887258) for bucket 83 Calculating Z arrays for bucket 83 Entering block accumulator loop for bucket 83: Getting block 100 of 207 Reserving size (4887258) for bucket 100 Calculating Z arrays for bucket 100 Entering block accumulator loop for bucket 100: bucket 95: 10% bucket 61: 100% Sorting block of length 4533381 for bucket 61 (Using difference cover) bucket 88: 20% bucket 94: 10% bucket 78: 70% bucket 81: 60% Sorting block time: 00:00:02 Returning block of 1903400 for bucket 56 bucket 65: 100% Sorting block of length 4529812 for bucket 65 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3827118 for bucket 74 Getting block 84 of 211 Reserving size (4887258) for bucket 84 Calculating Z arrays for bucket 84 Entering block accumulator loop for bucket 84: Sorting block time: 00:00:05 Returning block of 4559441 for bucket 70 bucket 87: 30% Getting block 101 of 207 Reserving size (4887258) for bucket 101 Calculating Z arrays for bucket 101 Entering block accumulator loop for bucket 101: bucket 92: 20% bucket 82: 50% bucket 96: 10% bucket 98: 10% bucket 67: 90% Getting block 102 of 207 Reserving size (4887258) for bucket 102 Calculating Z arrays for bucket 102 Entering block accumulator loop for bucket 102: Sorting block time: 00:00:03 Returning block of 3497579 for bucket 78 bucket 77: 80% bucket 85: 30% bucket 89: 20% bucket 64: 100% Sorting block of length 1464618 for bucket 64 (Using difference cover) bucket 97: 10% bucket 91: 20% Getting block 103 of 207 Reserving size (4887258) for bucket 103 Calculating Z arrays for bucket 103 Entering block accumulator loop for bucket 103: bucket 80: 70% bucket 90: 20% Sorting block time: 00:00:04 Returning block of 4120923 for bucket 57 bucket 83: 40% bucket 76: 80% Getting block 85 of 211 Reserving size (4887258) for bucket 85 Calculating Z arrays for bucket 85 Entering block accumulator loop for bucket 85: bucket 86: 30% bucket 99: 10% bucket 69: 100% Sorting block of length 4553108 for bucket 69 (Using difference cover) bucket 75: 90% bucket 79: 70% bucket 95: 20% Sorting block time: 00:00:02 Returning block of 3485955 for bucket 79 bucket 73: 80% Sorting block time: 00:00:02 Returning block of 1718814 for bucket 58 Getting block 104 of 207 Reserving size (4887258) for bucket 104 Calculating Z arrays for bucket 104 Entering block accumulator loop for bucket 104: Getting block 86 of 211 Reserving size (4887258) for bucket 86 Calculating Z arrays for bucket 86 Entering block accumulator loop for bucket 86: bucket 78: 80% bucket 68: 100% Sorting block of length 4755681 for bucket 68 (Using difference cover) Sorting block time: 00:00:05 Returning block of 3869890 for bucket 72 bucket 82: 20% bucket 93: 20% Sorting block time: 00:00:04 Returning block of 4210895 for bucket 63 bucket 71: 90% Sorting block time: 00:00:04 Returning block of 4858986 for bucket 77 bucket 84: 40% bucket 100: 10% bucket 94: 20% bucket 74: 90% bucket 81: 70% bucket 83: 10% Getting block 105 of 207 Reserving size (4887258) for bucket 105 Calculating Z arrays for bucket 105 Entering block accumulator loop for bucket 105: bucket 70: 90% bucket 72: 90% Getting block 87 of 211 Reserving size (4887258) for bucket 87 Calculating Z arrays for bucket 87 Entering block accumulator loop for bucket 87: bucket 88: 30% bucket 98: 20% Getting block 106 of 207 Reserving size (4887258) for bucket 106 Calculating Z arrays for bucket 106 Entering block accumulator loop for bucket 106: Sorting block time: 00:00:01 Returning block of 1464619 for bucket 64 bucket 87: 40% bucket 92: 30% bucket 102: 10% Getting block 88 of 211 Reserving size (4887258) for bucket 88 Calculating Z arrays for bucket 88 Entering block accumulator loop for bucket 88: bucket 82: 60% bucket 96: 20% bucket 84: 10% bucket 101: 10% bucket 85: 40% bucket 67: 100% Sorting block of length 4816145 for bucket 67 (Using difference cover) bucket 89: 30% bucket 91: 30% bucket 77: 90% bucket 104: 10% bucket 103: 10% bucket 90: 30% bucket 83: 50% bucket 80: 80% bucket 97: 20% bucket 86: 40% Sorting block time: 00:00:03 Returning block of 3769903 for bucket 60 bucket 95: 30% bucket 76: 90% bucket 85: 10% Sorting block time: 00:00:04 Returning block of 4664786 for bucket 81 bucket 99: 20% bucket 75: 100% Sorting block of length 821695 for bucket 75 (Using difference cover) Getting block 89 of 211 Reserving size (4887258) for bucket 89 Calculating Z arrays for bucket 89 Entering block accumulator loop for bucket 89: bucket 86: 10% bucket 79: 80% Getting block 107 of 207 Reserving size (4887258) for bucket 107 Calculating Z arrays for bucket 107 Entering block accumulator loop for bucket 107: bucket 93: 30% bucket 73: 90% Sorting block time: 00:00:03 Returning block of 4402935 for bucket 80 bucket 78: 90% bucket 94: 30% bucket 84: 50% bucket 100: 20% bucket 74: 100% Sorting block of length 4851706 for bucket 74 (Using difference cover) bucket 81: 80% bucket 82: 30% bucket 83: 20% Getting block 108 of 207 Reserving size (4887258) for bucket 108 Calculating Z arrays for bucket 108 Entering block accumulator loop for bucket 108: Sorting block time: 00:00:05 Returning block of 4754310 for bucket 59 bucket 71: 100% Sorting block of length 4761738 for bucket 71 (Using difference cover) bucket 105: 10% bucket 87: 10% bucket 88: 40% bucket 72: 100% Sorting block of length 1677452 for bucket 72 (Using difference cover) bucket 98: 30% bucket 70: 100% Sorting block of length 2903356 for bucket 70 (Using difference cover) Sorting block time: 00:00:01 Returning block of 821696 for bucket 75 bucket 87: 50% bucket 106: 10% bucket 95: 40% bucket 92: 40% bucket 82: 70% Sorting block time: 00:00:04 Returning block of 4533382 for bucket 61 Getting block 90 of 211 Reserving size (4887258) for bucket 90 Calculating Z arrays for bucket 90 Entering block accumulator loop for bucket 90: bucket 101: 20% bucket 96: 30% bucket 102: 20% bucket 85: 50% bucket 88: 10% bucket 91: 40% bucket 104: 20% bucket 77: 100% Sorting block of length 2678131 for bucket 77 (Using difference cover) bucket 84: 20% Sorting block time: 00:00:04 Returning block of 4515454 for bucket 66 bucket 89: 40% bucket 90: 40% bucket 83: 60% Getting block 91 of 211 Reserving size (4887258) for bucket 91 Calculating Z arrays for bucket 91 Entering block accumulator loop for bucket 91: bucket 97: 30% bucket 80: 90% Sorting block time: 00:00:05 Returning block of 4529813 for bucket 65 Getting block 92 of 211 Reserving size (4887258) for bucket 92 Calculating Z arrays for bucket 92 Entering block accumulator loop for bucket 92: bucket 86: 50% Getting block 93 of 211 Reserving size (4887258) for bucket 93 Calculating Z arrays for bucket 93 Entering block accumulator loop for bucket 93: bucket 103: 20% bucket 92: 50% Getting block 94 of 211 Reserving size (4887258) for bucket 94 Calculating Z arrays for bucket 94 Entering block accumulator loop for bucket 94: bucket 108: 10% bucket 76: 100% Sorting block of length 4415297 for bucket 76 (Using difference cover) bucket 99: 30% bucket 85: 20% bucket 89: 10% bucket 93: 40% bucket 94: 40% bucket 86: 20% bucket 107: 10% bucket 79: 90% bucket 87: 20% bucket 84: 60% bucket 82: 80% bucket 78: 100% Sorting block of length 4468416 for bucket 78 (Using difference cover) bucket 100: 30% bucket 95: 50% bucket 81: 90% bucket 83: 30% bucket 88: 50% bucket 90: 10% bucket 73: 100% Sorting block of length 4132359 for bucket 73 (Using difference cover) bucket 101: 30% bucket 98: 40% bucket 105: 20% bucket 87: 60% bucket 82: 40% Sorting block time: 00:00:02 Returning block of 1677453 for bucket 72 bucket 96: 40% Getting block 95 of 211 Reserving size (4887258) for bucket 95 Calculating Z arrays for bucket 95 Entering block accumulator loop for bucket 95: Sorting block time: 00:00:04 Returning block of 4755682 for bucket 68 Sorting block time: 00:00:05 Returning block of 4553109 for bucket 69 bucket 85: 60% bucket 91: 50% bucket 102: 30% bucket 106: 20% bucket 84: 30% Getting block 96 of 211 Reserving size (4887258) for bucket 96 Calculating Z arrays for bucket 96 Entering block accumulator loop for bucket 96: bucket 83: 70% bucket 90: 50% Getting block 97 of 211 Reserving size (4887258) for bucket 97 Calculating Z arrays for bucket 97 Entering block accumulator loop for bucket 97: bucket 104: 30% bucket 88: 20% bucket 89: 50% bucket 97: 40% bucket 80: 100% Sorting block of length 1904521 for bucket 80 (Using difference cover) bucket 91: 10% bucket 86: 60% bucket 92: 60% Sorting block time: 00:00:02 Returning block of 2903357 for bucket 70 bucket 93: 10% bucket 92: 10% bucket 93: 50% Getting block 98 of 211 Reserving size (4887258) for bucket 98 Calculating Z arrays for bucket 98 Entering block accumulator loop for bucket 98: Sorting block time: 00:00:04 Returning block of 4816146 for bucket 67 bucket 99: 40% bucket 108: 20% bucket 85: 30% bucket 94: 50% bucket 89: 20% Sorting block time: 00:00:03 Returning block of 2678132 for bucket 77 bucket 94: 10% bucket 82: 90% bucket 103: 30% Getting block 99 of 211 Reserving size (4887258) for bucket 99 Calculating Z arrays for bucket 99 Entering block accumulator loop for bucket 99: Getting block 100 of 211 Reserving size (4887258) for bucket 100 Calculating Z arrays for bucket 100 Entering block accumulator loop for bucket 100: bucket 107: 20% bucket 87: 30% bucket 84: 70% bucket 98: 50% bucket 86: 30% bucket 79: 100% Sorting block of length 4692246 for bucket 79 (Using difference cover) bucket 95: 60% bucket 100: 40% bucket 83: 40% bucket 81: 100% Sorting block of length 4058490 for bucket 81 (Using difference cover) bucket 87: 70% bucket 88: 60% bucket 101: 40% bucket 96: 50% bucket 90: 20% bucket 105: 30% bucket 106: 30% bucket 82: 50% bucket 88: 30% bucket 91: 60% bucket 85: 70% bucket 84: 40% bucket 83: 80% bucket 102: 40% bucket 95: 10% bucket 92: 70% Sorting block time: 00:00:04 Returning block of 4761739 for bucket 71 bucket 104: 40% bucket 90: 60% bucket 89: 60% bucket 97: 10% bucket 97: 50% Getting block 101 of 211 Reserving size (4887258) for bucket 101 Calculating Z arrays for bucket 101 Entering block accumulator loop for bucket 101: Sorting block time: 00:00:02 Returning block of 1904522 for bucket 80 bucket 91: 20% bucket 86: 70% bucket 96: 10% Getting block 102 of 211 Reserving size (4887258) for bucket 102 Calculating Z arrays for bucket 102 Entering block accumulator loop for bucket 102: bucket 93: 60% Sorting block time: 00:00:04 Returning block of 4851707 for bucket 74 bucket 93: 20% bucket 108: 30% bucket 82: 100% Sorting block of length 2704194 for bucket 82 (Using difference cover) bucket 94: 60% Getting block 103 of 211 Reserving size (4887258) for bucket 103 Calculating Z arrays for bucket 103 Entering block accumulator loop for bucket 103: bucket 92: 20% bucket 99: 50% bucket 85: 40% bucket 89: 30% bucket 84: 80% bucket 99: 10% bucket 107: 30% bucket 94: 20% bucket 95: 70% bucket 100: 50% bucket 87: 40% bucket 100: 10% bucket 87: 80% Sorting block time: 00:00:04 Returning block of 4415298 for bucket 76 bucket 98: 10% bucket 103: 40% bucket 86: 40% bucket 83: 50% bucket 98: 60% bucket 91: 70% bucket 96: 60% Getting block 104 of 211 Reserving size (4887258) for bucket 104 Calculating Z arrays for bucket 104 Entering block accumulator loop for bucket 104: bucket 84: 50% bucket 88: 70% bucket 101: 50% bucket 92: 80% bucket 106: 40% bucket 90: 30% Sorting block time: 00:00:03 Returning block of 4132360 for bucket 73 bucket 83: 90% bucket 82: 60% bucket 85: 80% bucket 105: 40% bucket 102: 50% bucket 97: 60% Sorting block time: 00:00:04 Returning block of 4468417 for bucket 78 bucket 104: 50% bucket 88: 40% Getting block 105 of 211 Reserving size (4887258) for bucket 105 Calculating Z arrays for bucket 105 Entering block accumulator loop for bucket 105: bucket 90: 70% bucket 95: 20% Getting block 106 of 211 Reserving size (4887258) for bucket 106 Calculating Z arrays for bucket 106 Entering block accumulator loop for bucket 106: bucket 89: 70% bucket 86: 80% bucket 91: 80% bucket 97: 20% bucket 93: 70% bucket 91: 30% bucket 101: 10% bucket 108: 40% bucket 102: 10% Sorting block time: 00:00:03 Returning block of 4058491 for bucket 81 bucket 93: 30% bucket 94: 70% bucket 84: 90% bucket 96: 20% bucket 89: 40% Getting block 107 of 211 Reserving size (4887258) for bucket 107 Calculating Z arrays for bucket 107 Entering block accumulator loop for bucket 107: bucket 85: 50% bucket 103: 10% bucket 98: 20% bucket 99: 20% bucket 99: 60% bucket 107: 40% bucket 95: 80% bucket 92: 30% bucket 100: 60% bucket 87: 90% bucket 87: 50% bucket 104: 10% bucket 96: 70% Sorting block time: 00:00:03 Returning block of 2704195 for bucket 82 bucket 83: 60% bucket 100: 20% bucket 86: 50% bucket 90: 40% bucket 94: 30% bucket 98: 70% Getting block 109 of 207 Reserving size (4887258) for bucket 109 Calculating Z arrays for bucket 109 Entering block accumulator loop for bucket 109: bucket 92: 90% bucket 88: 80% bucket 104: 60% bucket 103: 50% bucket 101: 60% bucket 84: 60% bucket 83: 100% Sorting block of length 5588423 for bucket 83 (Using difference cover) bucket 85: 90% bucket 91: 90% bucket 97: 70% bucket 106: 50% bucket 102: 60% bucket 82: 70% bucket 105: 50% bucket 90: 80% bucket 93: 80% bucket 86: 90% bucket 88: 50% bucket 105: 10% bucket 106: 10% bucket 89: 80% bucket 95: 30% bucket 91: 40% bucket 97: 30% bucket 94: 80% bucket 84: 100% Sorting block of length 2045885 for bucket 84 (Using difference cover) bucket 83: 70% Sorting block time: 00:00:05 Returning block of 4692247 for bucket 79 bucket 108: 50% bucket 93: 40% bucket 101: 20% bucket 89: 50% bucket 102: 20% bucket 85: 60% bucket 98: 80% Getting block 108 of 211 Reserving size (4887258) for bucket 108 Calculating Z arrays for bucket 108 Entering block accumulator loop for bucket 108: bucket 95: 90% bucket 107: 50% bucket 87: 100% Sorting block of length 3137422 for bucket 87 (Using difference cover) bucket 107: 10% bucket 90: 50% bucket 103: 20% bucket 104: 70% bucket 100: 70% bucket 99: 70% bucket 96: 30% bucket 96: 80% bucket 87: 60% bucket 92: 40% bucket 98: 30% bucket 92: 100% Sorting block of length 4794632 for bucket 92 (Using difference cover) bucket 99: 30% bucket 86: 60% bucket 109: 10% bucket 104: 20% bucket 88: 90% bucket 100: 30% bucket 91: 100% Sorting block of length 3917475 for bucket 91 (Using difference cover) bucket 101: 70% bucket 85: 100% Sorting block of length 2648316 for bucket 85 (Using difference cover) bucket 84: 70% bucket 94: 40% bucket 97: 80% bucket 103: 60% bucket 102: 70% bucket 93: 90% bucket 105: 60% bucket 106: 60% bucket 82: 80% bucket 93: 50% bucket 97: 40% bucket 90: 90% bucket 88: 60% bucket 86: 100% Sorting block of length 4399529 for bucket 86 (Using difference cover) bucket 89: 90% bucket 94: 90% bucket 91: 50% bucket 105: 20% bucket 83: 80% bucket 106: 20% bucket 95: 40% bucket 108: 60% Sorting block time: 00:00:02 Returning block of 2045886 for bucket 84 bucket 89: 60% bucket 98: 90% bucket 95: 100% Sorting block of length 6464752 for bucket 95 (Using difference cover) Getting block 110 of 207 Reserving size (4887258) for bucket 110 Calculating Z arrays for bucket 110 Entering block accumulator loop for bucket 110: bucket 101: 30% bucket 85: 70% bucket 107: 60% bucket 96: 90% bucket 104: 80% bucket 99: 80% bucket 100: 80% bucket 90: 60% bucket 102: 30% bucket 108: 10% bucket 92: 50% bucket 87: 70% bucket 103: 30% bucket 107: 20% bucket 96: 40% bucket 98: 40% bucket 99: 40% bucket 86: 70% bucket 88: 100% Sorting block of length 2250560 for bucket 88 (Using difference cover) bucket 109: 20% bucket 101: 80% bucket 97: 90% bucket 84: 80% bucket 104: 30% bucket 100: 40% bucket 94: 50% bucket 93: 100% Sorting block of length 328078 for bucket 93 (Using difference cover) bucket 102: 80% bucket 90: 100% Sorting block of length 2993623 for bucket 90 (Using difference cover) bucket 105: 70% bucket 106: 70% bucket 103: 70% bucket 82: 90% bucket 93: 60% Sorting block time: 00:00:03 Returning block of 3137423 for bucket 87 bucket 97: 50% bucket 89: 100% Sorting block of length 4272884 for bucket 89 (Using difference cover) bucket 94: 100% Sorting block of length 214759 for bucket 94 (Using difference cover) Getting block 111 of 207 Reserving size (4887258) for bucket 111 Calculating Z arrays for bucket 111 Entering block accumulator loop for bucket 111: bucket 88: 70% Sorting block time: 00:00:00 Returning block of 328079 for bucket 93 Getting block 112 of 207 Reserving size (4887258) for bucket 112 Calculating Z arrays for bucket 112 Entering block accumulator loop for bucket 112: Sorting block time: 00:00:02 Returning block of 2648317 for bucket 85 bucket 91: 60% Getting block 113 of 207 Reserving size (4887258) for bucket 113 Calculating Z arrays for bucket 113 Entering block accumulator loop for bucket 113: bucket 83: 90% bucket 89: 70% bucket 105: 30% bucket 100: 90% bucket 108: 70% bucket 96: 100% Sorting block of length 1033660 for bucket 96 (Using difference cover) bucket 98: 100% Sorting block of length 3631795 for bucket 98 (Using difference cover) bucket 95: 50% Sorting block time: 00:00:01 Returning block of 214760 for bucket 94 bucket 110: 10% Getting block 114 of 207 Reserving size (4887258) for bucket 114 Calculating Z arrays for bucket 114 Entering block accumulator loop for bucket 114: bucket 106: 30% bucket 107: 70% bucket 104: 90% bucket 99: 90% bucket 85: 80% Sorting block time: 00:00:03 Returning block of 3917476 for bucket 91 bucket 90: 70% bucket 101: 40% bucket 92: 60% Getting block 115 of 207 Reserving size (4887258) for bucket 115 Calculating Z arrays for bucket 115 Entering block accumulator loop for bucket 115: bucket 108: 20% bucket 87: 80% bucket 102: 40% bucket 103: 40% bucket 96: 50% bucket 86: 80% bucket 109: 30% bucket 107: 30% bucket 97: 100% Sorting block of length 4241854 for bucket 97 (Using difference cover) bucket 99: 50% bucket 98: 50% bucket 101: 90% Sorting block time: 00:00:03 Returning block of 4794633 for bucket 92 bucket 84: 90% Sorting block time: 00:00:05 Returning block of 5588424 for bucket 83 bucket 94: 60% bucket 102: 90% bucket 104: 40% bucket 100: 50% Getting block 116 of 207 Reserving size (4887258) for bucket 116 Calculating Z arrays for bucket 116 Entering block accumulator loop for bucket 116: Sorting block time: 00:00:01 Returning block of 1033661 for bucket 96 Getting block 117 of 207 Reserving size (4887258) for bucket 117 Calculating Z arrays for bucket 117 Entering block accumulator loop for bucket 117: Getting block 118 of 207 Reserving size (4887258) for bucket 118 Calculating Z arrays for bucket 118 Entering block accumulator loop for bucket 118: bucket 113: 10% bucket 105: 80% bucket 103: 80% bucket 106: 80% bucket 82: 100% Sorting block of length 3326406 for bucket 82 (Using difference cover) bucket 100: 100% Sorting block of length 3554577 for bucket 100 (Using difference cover) bucket 93: 70% Sorting block time: 00:00:03 Returning block of 2250561 for bucket 88 bucket 88: 80% bucket 112: 10% bucket 111: 10% bucket 97: 60% Getting block 119 of 207 Reserving size (4887258) for bucket 119 Calculating Z arrays for bucket 119 Entering block accumulator loop for bucket 119: bucket 91: 70% bucket 83: 100% Sorting block of length 4164161 for bucket 83 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4399530 for bucket 86 bucket 108: 80% bucket 89: 80% bucket 105: 40% bucket 110: 20% bucket 99: 100% Sorting block of length 3858438 for bucket 99 (Using difference cover) Getting block 120 of 207 Reserving size (4887258) for bucket 120 Calculating Z arrays for bucket 120 Entering block accumulator loop for bucket 120: Sorting block time: 00:00:03 Returning block of 2993624 for bucket 90 bucket 114: 10% bucket 107: 80% bucket 85: 90% bucket 104: 100% Sorting block of length 552858 for bucket 104 (Using difference cover) bucket 95: 60% Getting block 121 of 207 bucket 90: 80% Reserving size (4887258) for bucket 121 Calculating Z arrays for bucket 121 Entering block accumulator loop for bucket 121: bucket 106: 40% bucket 115: 10% bucket 87: 90% bucket 108: 30% bucket 102: 50% bucket 103: 50% bucket 109: 40% bucket 86: 90% bucket 92: 70% bucket 96: 60% bucket 119: 10% bucket 101: 50% bucket 101: 100% Sorting block of length 4304421 for bucket 101 (Using difference cover) bucket 99: 60% bucket 107: 40% bucket 98: 60% bucket 84: 100% Sorting block of length 3813486 for bucket 84 (Using difference cover) Sorting block time: 00:00:00 Returning block of 552859 for bucket 104 Getting block 122 of 207 Reserving size (4887258) for bucket 122 Calculating Z arrays for bucket 122 Entering block accumulator loop for bucket 122: bucket 102: 100% Sorting block of length 1465830 for bucket 102 (Using difference cover) bucket 116: 10% bucket 118: 10% bucket 117: 10% bucket 94: 70% bucket 105: 90% bucket 113: 20% bucket 106: 90% bucket 103: 90% bucket 104: 50% bucket 100: 60% bucket 93: 80% bucket 112: 20% bucket 88: 90% bucket 111: 20% bucket 85: 100% Sorting block of length 4677028 for bucket 85 (Using difference cover) bucket 97: 70% bucket 91: 80% Sorting block time: 00:00:04 Returning block of 4272885 for bucket 89 bucket 108: 90% bucket 120: 10% Getting block 123 of 207 Reserving size (4887258) for bucket 123 Calculating Z arrays for bucket 123 Entering block accumulator loop for bucket 123: bucket 110: 30% bucket 107: 90% bucket 114: 20% Sorting block time: 00:00:03 Returning block of 3631796 for bucket 98 bucket 121: 10% bucket 89: 90% bucket 105: 50% bucket 90: 90% Getting block 124 of 207 Reserving size (4887258) for bucket 124 Calculating Z arrays for bucket 124 Entering block accumulator loop for bucket 124: bucket 115: 20% bucket 119: 20% bucket 106: 50% bucket 87: 100% Sorting block of length 3576413 for bucket 87 (Using difference cover) bucket 95: 70% bucket 109: 50% Sorting block time: 00:00:02 Returning block of 1465831 for bucket 102 bucket 86: 100% Sorting block of length 2098327 for bucket 86 (Using difference cover) Getting block 125 of 207 Reserving size (4887258) for bucket 125 Calculating Z arrays for bucket 125 Entering block accumulator loop for bucket 125: bucket 108: 40% bucket 92: 80% bucket 103: 60% bucket 102: 60% bucket 96: 70% bucket 101: 60% bucket 122: 10% Sorting block time: 00:00:03 Returning block of 3326407 for bucket 82 bucket 99: 70% bucket 116: 20% bucket 107: 50% bucket 117: 20% bucket 98: 70% Getting block 109 of 211 Reserving size (4887258) for bucket 109 Calculating Z arrays for bucket 109 Entering block accumulator loop for bucket 109: bucket 118: 20% bucket 105: 100% Sorting block of length 4845293 for bucket 105 (Using difference cover) Sorting block time: 00:00:03 Returning block of 3554578 for bucket 100 bucket 106: 100% Sorting block of length 4637122 for bucket 106 (Using difference cover) bucket 113: 30% bucket 94: 80% Sorting block time: 00:00:06 Returning block of 6464753 for bucket 95 Getting block 126 of 207 Reserving size (4887258) for bucket 126 Calculating Z arrays for bucket 126 Entering block accumulator loop for bucket 126: bucket 104: 60% Sorting block time: 00:00:03 Returning block of 4164162 for bucket 83 bucket 93: 90% bucket 103: 100% Sorting block of length 4872795 for bucket 103 (Using difference cover) bucket 112: 30% bucket 100: 70% bucket 88: 100% Sorting block of length 4294404 for bucket 88 (Using difference cover) Getting block 127 of 207 Reserving size (4887258) for bucket 127 Calculating Z arrays for bucket 127 Entering block accumulator loop for bucket 127: Sorting block time: 00:00:05 Returning block of 4241855 for bucket 97 Getting block 110 of 211 Reserving size (4887258) for bucket 110 Calculating Z arrays for bucket 110 Entering block accumulator loop for bucket 110: bucket 91: 90% bucket 97: 80% Getting block 128 of 207 Reserving size (4887258) for bucket 128 Calculating Z arrays for bucket 128 Entering block accumulator loop for bucket 128: bucket 111: 30% bucket 108: 100% Sorting block of length 4139873 for bucket 108 (Using difference cover) bucket 123: 10% bucket 120: 20% bucket 110: 40% bucket 107: 100% Sorting block of length 1313820 for bucket 107 (Using difference cover) bucket 121: 20% bucket 114: 30% bucket 89: 100% Sorting block of length 4239872 for bucket 89 (Using difference cover) bucket 90: 100% Sorting block of length 3735983 for bucket 90 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3858439 for bucket 99 bucket 105: 60% bucket 124: 10% bucket 115: 30% bucket 119: 30% Getting block 129 of 207 Reserving size (4887258) for bucket 129 Calculating Z arrays for bucket 129 Entering block accumulator loop for bucket 129: bucket 109: 60% bucket 95: 80% bucket 106: 60% bucket 125: 10% bucket 92: 90% bucket 108: 50% Sorting block time: 00:00:02 Returning block of 2098328 for bucket 86 bucket 122: 20% bucket 96: 80% bucket 109: 10% bucket 102: 70% bucket 116: 30% Getting block 111 of 211 Reserving size (4887258) for bucket 111 Calculating Z arrays for bucket 111 Entering block accumulator loop for bucket 111: bucket 93: 100% Sorting block of length 2486401 for bucket 93 (Using difference cover) bucket 101: 70% bucket 117: 30% bucket 103: 70% Sorting block time: 00:00:04 Returning block of 4304422 for bucket 101 bucket 99: 80% bucket 98: 80% bucket 118: 30% bucket 113: 40% Getting block 130 of 207 Reserving size (4887258) for bucket 130 Calculating Z arrays for bucket 130 Entering block accumulator loop for bucket 130: bucket 107: 60% bucket 126: 10% bucket 94: 90% Sorting block time: 00:00:04 Returning block of 3813487 for bucket 84 Sorting block time: 00:00:01 Returning block of 1313821 for bucket 107 bucket 112: 40% bucket 110: 10% Getting block 112 of 211 Reserving size (4887258) for bucket 112 Calculating Z arrays for bucket 112 Entering block accumulator loop for bucket 112: bucket 104: 70% Getting block 131 of 207 Reserving size (4887258) for bucket 131 Calculating Z arrays for bucket 131 Entering block accumulator loop for bucket 131: bucket 127: 10% bucket 100: 80% bucket 91: 100% Sorting block of length 2146954 for bucket 91 (Using difference cover) bucket 128: 10% bucket 97: 90% bucket 111: 40% bucket 123: 20% bucket 120: 30% bucket 114: 40% bucket 110: 50% bucket 119: 40% bucket 115: 40% Sorting block time: 00:00:03 Returning block of 3576414 for bucket 87 bucket 121: 30% bucket 129: 10% bucket 105: 70% Sorting block time: 00:00:04 Returning block of 4677029 for bucket 85 bucket 109: 70% Getting block 113 of 211 Reserving size (4887258) for bucket 113 Calculating Z arrays for bucket 113 Entering block accumulator loop for bucket 113: bucket 124: 20% bucket 92: 100% Sorting block of length 3269524 for bucket 92 (Using difference cover) Getting block 114 of 211 Reserving size (4887258) for bucket 114 Calculating Z arrays for bucket 114 Entering block accumulator loop for bucket 114: bucket 95: 90% bucket 125: 20% Sorting block time: 00:00:03 Returning block of 4294405 for bucket 88 bucket 109: 20% bucket 111: 10% bucket 108: 60% bucket 106: 70% bucket 122: 30% bucket 116: 40% Getting block 115 of 211 Reserving size (4887258) for bucket 115 Calculating Z arrays for bucket 115 Entering block accumulator loop for bucket 115: bucket 117: 40% bucket 96: 90% bucket 101: 80% bucket 113: 50% bucket 102: 80% bucket 118: 40% bucket 103: 80% bucket 99: 90% bucket 126: 20% bucket 130: 10% bucket 112: 10% bucket 98: 90% bucket 94: 100% Sorting block of length 4757644 for bucket 94 (Using difference cover) bucket 110: 20% bucket 112: 50% Sorting block time: 00:00:02 Returning block of 2486402 for bucket 93 bucket 107: 70% bucket 131: 10% Getting block 116 of 211 Reserving size (4887258) for bucket 116 Calculating Z arrays for bucket 116 Entering block accumulator loop for bucket 116: bucket 127: 20% bucket 104: 80% bucket 111: 50% bucket 100: 90% Sorting block time: 00:00:03 Returning block of 4139874 for bucket 108 bucket 128: 20% bucket 120: 40% Getting block 132 of 207 Reserving size (4887258) for bucket 132 Calculating Z arrays for bucket 132 Entering block accumulator loop for bucket 132: bucket 97: 100% Sorting block of length 3195873 for bucket 97 (Using difference cover) bucket 123: 30% Sorting block time: 00:00:05 Returning block of 4637123 for bucket 106 bucket 110: 60% bucket 115: 10% bucket 114: 50% bucket 113: 10% Sorting block time: 00:00:04 Returning block of 4872796 for bucket 103 bucket 114: 10% bucket 121: 40% Getting block 133 of 207 Reserving size (4887258) for bucket 133 Calculating Z arrays for bucket 133 Entering block accumulator loop for bucket 133: bucket 119: 50% Sorting block time: 00:00:04 Returning block of 4239873 for bucket 89 bucket 115: 50% bucket 124: 30% bucket 109: 80% Getting block 134 of 207 Reserving size (4887258) for bucket 134 Calculating Z arrays for bucket 134 Entering block accumulator loop for bucket 134: bucket 129: 20% Getting block 117 of 211 Reserving size (4887258) for bucket 117 Calculating Z arrays for bucket 117 Entering block accumulator loop for bucket 117: bucket 105: 80% bucket 116: 50% bucket 125: 30% Sorting block time: 00:00:05 Returning block of 4845294 for bucket 105 bucket 122: 40% bucket 113: 60% bucket 111: 20% bucket 109: 30% bucket 95: 100% Sorting block of length 4337220 for bucket 95 (Using difference cover) Getting block 135 of 207 Reserving size (4887258) for bucket 135 Calculating Z arrays for bucket 135 Entering block accumulator loop for bucket 135: bucket 106: 80% Sorting block time: 00:00:05 Returning block of 3735984 for bucket 90 bucket 118: 50% bucket 117: 50% bucket 108: 70% bucket 96: 100% Sorting block of length 2648416 for bucket 96 (Using difference cover) bucket 103: 90% bucket 110: 30% Sorting block time: 00:00:03 Returning block of 2146955 for bucket 91 bucket 112: 20% Getting block 118 of 211 Reserving size (4887258) for bucket 118 Calculating Z arrays for bucket 118 Entering block accumulator loop for bucket 118: bucket 102: 90% bucket 101: 90% bucket 126: 30% Getting block 119 of 211 Reserving size (4887258) for bucket 119 Calculating Z arrays for bucket 119 Entering block accumulator loop for bucket 119: bucket 112: 60% bucket 130: 20% bucket 99: 100% Sorting block of length 3497444 for bucket 99 (Using difference cover) bucket 116: 10% bucket 104: 90% bucket 114: 20% bucket 132: 10% bucket 128: 30% bucket 107: 80% bucket 131: 20% bucket 98: 100% Sorting block of length 3891452 for bucket 98 (Using difference cover) bucket 111: 60% bucket 127: 30% bucket 100: 100% Sorting block of length 4159167 for bucket 100 (Using difference cover) bucket 120: 50% bucket 123: 40% bucket 113: 20% bucket 115: 20% bucket 124: 40% bucket 121: 50% bucket 119: 60% bucket 117: 10% bucket 110: 70% bucket 110: 40% bucket 114: 60% bucket 133: 10% bucket 115: 60% Sorting block time: 00:00:02 Returning block of 3195874 for bucket 97 bucket 116: 60% bucket 134: 10% bucket 122: 50% bucket 118: 10% bucket 119: 10% Getting block 120 of 211 Reserving size (4887258) for bucket 120 Calculating Z arrays for bucket 120 Entering block accumulator loop for bucket 120: bucket 125: 40% bucket 129: 30% bucket 109: 90% bucket 105: 90% bucket 113: 70% bucket 111: 30% bucket 109: 40% bucket 118: 60% bucket 117: 60% bucket 135: 10% bucket 112: 30% bucket 106: 90% bucket 116: 20% bucket 112: 70% bucket 132: 20% bucket 103: 100% Sorting block of length 2308448 for bucket 103 (Using difference cover) bucket 108: 80% bucket 126: 40% bucket 102: 100% Sorting block of length 4094398 for bucket 102 (Using difference cover) bucket 130: 30% bucket 114: 30% bucket 101: 100% Sorting block of length 2842487 for bucket 101 (Using difference cover) bucket 113: 30% bucket 104: 100% Sorting block of length 4414113 for bucket 104 (Using difference cover) bucket 111: 70% bucket 131: 30% Sorting block time: 00:00:05 Returning block of 3269525 for bucket 92 bucket 107: 90% bucket 127: 40% bucket 128: 40% Getting block 121 of 211 Reserving size (4887258) for bucket 121 Calculating Z arrays for bucket 121 Entering block accumulator loop for bucket 121: bucket 117: 20% bucket 120: 60% Sorting block time: 00:00:02 Returning block of 2648417 for bucket 96 bucket 123: 50% Getting block 122 of 211 Reserving size (4887258) for bucket 122 Calculating Z arrays for bucket 122 Entering block accumulator loop for bucket 122: bucket 119: 20% bucket 115: 30% bucket 110: 50% bucket 110: 80% bucket 121: 60% bucket 119: 70% bucket 124: 50% bucket 118: 20% bucket 114: 70% bucket 115: 70% bucket 120: 10% bucket 116: 70% bucket 122: 60% bucket 133: 20% bucket 109: 50% bucket 105: 100% Sorting block of length 2175771 for bucket 105 (Using difference cover) bucket 125: 50% bucket 134: 20% bucket 113: 80% bucket 111: 40% bucket 126: 50% bucket 109: 100% Sorting block of length 4095490 for bucket 109 (Using difference cover) bucket 118: 70% Sorting block time: 00:00:05 Returning block of 4757645 for bucket 94 bucket 129: 40% bucket 116: 30% Sorting block time: 00:00:03 Returning block of 3497445 for bucket 99 bucket 112: 40% Getting block 123 of 211 Reserving size (4887258) for bucket 123 Calculating Z arrays for bucket 123 Entering block accumulator loop for bucket 123: bucket 112: 80% Getting block 124 of 211 Reserving size (4887258) for bucket 124 Calculating Z arrays for bucket 124 Entering block accumulator loop for bucket 124: bucket 113: 40% bucket 117: 30% bucket 114: 40% bucket 106: 100% Sorting block of length 4001684 for bucket 106 (Using difference cover) bucket 117: 70% bucket 132: 30% bucket 135: 20% bucket 108: 90% Sorting block time: 00:00:04 Returning block of 4159168 for bucket 100 bucket 130: 40% Sorting block time: 00:00:02 Returning block of 2308449 for bucket 103 bucket 111: 80% bucket 121: 10% Getting block 125 of 211 Reserving size (4887258) for bucket 125 Calculating Z arrays for bucket 125 Entering block accumulator loop for bucket 125: bucket 131: 40% Sorting block time: 00:00:04 Returning block of 4337221 for bucket 95 bucket 127: 50% Getting block 126 of 211 Reserving size (4887258) for bucket 126 Calculating Z arrays for bucket 126 Entering block accumulator loop for bucket 126: bucket 120: 20% bucket 107: 100% Sorting block of length 3991217 for bucket 107 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3891453 for bucket 98 bucket 128: 50% bucket 120: 70% bucket 114: 80% Getting block 127 of 211 Reserving size (4887258) for bucket 127 Calculating Z arrays for bucket 127 Entering block accumulator loop for bucket 127: bucket 119: 30% bucket 110: 60% bucket 122: 10% Getting block 128 of 211 Reserving size (4887258) for bucket 128 Calculating Z arrays for bucket 128 Entering block accumulator loop for bucket 128: bucket 123: 60% bucket 125: 60% bucket 115: 40% bucket 110: 90% bucket 121: 70% bucket 118: 30% bucket 126: 60% bucket 124: 60% bucket 116: 80% bucket 115: 80% bucket 119: 80% bucket 109: 60% Sorting block time: 00:00:02 Returning block of 2175772 for bucket 105 bucket 116: 40% Sorting block time: 00:00:03 Returning block of 2842488 for bucket 101 bucket 122: 70% bucket 111: 50% bucket 118: 80% Getting block 129 of 211 Reserving size (4887258) for bucket 129 Calculating Z arrays for bucket 129 Entering block accumulator loop for bucket 129: bucket 113: 90% Getting block 130 of 211 Reserving size (4887258) for bucket 130 Calculating Z arrays for bucket 130 Entering block accumulator loop for bucket 130: bucket 133: 30% bucket 123: 10% bucket 134: 30% bucket 129: 50% bucket 112: 50% bucket 117: 40% bucket 124: 10% bucket 112: 90% bucket 113: 50% bucket 114: 50% bucket 117: 80% bucket 132: 40% bucket 126: 10% bucket 125: 10% bucket 130: 50% bucket 121: 20% bucket 111: 90% bucket 108: 100% Sorting block of length 3807638 for bucket 108 (Using difference cover) bucket 120: 30% Sorting block time: 00:00:04 Returning block of 4414114 for bucket 104 bucket 116: 90% bucket 131: 50% bucket 135: 30% bucket 127: 60% bucket 127: 10% bucket 119: 40% Sorting block time: 00:00:04 Returning block of 4094399 for bucket 102 bucket 110: 70% Getting block 131 of 211 Reserving size (4887258) for bucket 131 Calculating Z arrays for bucket 131 Entering block accumulator loop for bucket 131: bucket 128: 10% bucket 120: 80% bucket 122: 20% bucket 114: 90% bucket 128: 60% bucket 115: 50% bucket 125: 70% Getting block 132 of 211 Reserving size (4887258) for bucket 132 Calculating Z arrays for bucket 132 Entering block accumulator loop for bucket 132: Sorting block time: 00:00:02 Returning block of 4001685 for bucket 106 bucket 123: 70% bucket 118: 40% bucket 121: 80% bucket 110: 100% Sorting block of length 1839579 for bucket 110 (Using difference cover) bucket 116: 50% bucket 126: 70% Getting block 133 of 211 Reserving size (4887258) for bucket 133 Calculating Z arrays for bucket 133 Entering block accumulator loop for bucket 133: bucket 124: 20% bucket 119: 90% bucket 129: 10% bucket 109: 70% bucket 115: 90% bucket 122: 80% bucket 124: 70% bucket 130: 10% bucket 111: 60% bucket 123: 20% bucket 113: 100% Sorting block of length 4678806 for bucket 113 (Using difference cover) bucket 118: 90% bucket 117: 50% bucket 133: 40% bucket 129: 60% bucket 113: 60% bucket 117: 90% bucket 112: 60% bucket 134: 40% Sorting block time: 00:00:04 Returning block of 4095491 for bucket 109 bucket 114: 60% bucket 112: 100% Sorting block of length 428034 for bucket 112 (Using difference cover) Getting block 136 of 207 Reserving size (4887258) for bucket 136 Calculating Z arrays for bucket 136 Entering block accumulator loop for bucket 136: bucket 126: 20% bucket 128: 20% Sorting block time: 00:00:00 Returning block of 428035 for bucket 112 bucket 121: 30% Getting block 137 of 207 Reserving size (4887258) for bucket 137 Calculating Z arrays for bucket 137 Entering block accumulator loop for bucket 137: bucket 132: 50% bucket 127: 20% bucket 122: 30% bucket 120: 40% bucket 125: 20% bucket 130: 60% bucket 111: 100% Sorting block of length 4883284 for bucket 111 (Using difference cover) bucket 116: 100% Sorting block of length 3960387 for bucket 116 (Using difference cover) bucket 131: 60% bucket 116: 60% bucket 131: 10% bucket 121: 90% bucket 132: 10% bucket 110: 80% bucket 115: 60% bucket 127: 70% bucket 120: 90% bucket 119: 50% bucket 133: 10% bucket 118: 50% bucket 114: 100% Sorting block of length 4444525 for bucket 114 (Using difference cover) bucket 124: 30% Sorting block time: 00:00:04 Returning block of 3991218 for bucket 107 bucket 128: 70% bucket 135: 40% bucket 125: 80% bucket 123: 80% bucket 129: 20% Getting block 134 of 211 Reserving size (4887258) for bucket 134 Calculating Z arrays for bucket 134 Entering block accumulator loop for bucket 134: bucket 109: 80% bucket 117: 60% Sorting block time: 00:00:02 Returning block of 1839580 for bucket 110 bucket 126: 80% bucket 119: 100% Sorting block of length 3933386 for bucket 119 (Using difference cover) bucket 130: 20% Getting block 138 of 207 Reserving size (4887258) for bucket 138 Calculating Z arrays for bucket 138 Entering block accumulator loop for bucket 138: bucket 117: 100% Sorting block of length 1330635 for bucket 117 (Using difference cover) bucket 115: 100% Sorting block of length 4610528 for bucket 115 (Using difference cover) bucket 111: 70% bucket 124: 80% bucket 123: 30% bucket 122: 90% bucket 118: 100% Sorting block of length 4839182 for bucket 118 (Using difference cover) bucket 113: 70% bucket 112: 70% bucket 129: 70% bucket 114: 70% Sorting block time: 00:00:03 Returning block of 3807639 for bucket 108 bucket 133: 50% Getting block 135 of 211 Reserving size (4887258) for bucket 135 Calculating Z arrays for bucket 135 Entering block accumulator loop for bucket 135: bucket 136: 10% bucket 134: 50% bucket 117: 70% bucket 128: 30% bucket 130: 30% bucket 121: 40% bucket 127: 30% bucket 131: 70% bucket 121: 100% Sorting block of length 4512076 for bucket 121 (Using difference cover) bucket 126: 30% bucket 122: 40% bucket 131: 20% bucket 137: 10% bucket 120: 50% bucket 116: 70% bucket 132: 20% bucket 132: 60% bucket 115: 70% bucket 133: 20% bucket 125: 30% bucket 119: 60% bucket 118: 60% bucket 130: 70% bucket 120: 100% Sorting block of length 2149667 for bucket 120 (Using difference cover) bucket 138: 10% bucket 127: 80% bucket 124: 40% bucket 110: 90% bucket 129: 30% bucket 128: 80% bucket 123: 90% bucket 125: 90% bucket 109: 90% bucket 135: 50% bucket 134: 10% bucket 117: 80% bucket 111: 80% Sorting block time: 00:00:02 Returning block of 1330636 for bucket 117 Getting block 139 of 207 Reserving size (4887258) for bucket 139 Calculating Z arrays for bucket 139 Entering block accumulator loop for bucket 139: bucket 124: 90% bucket 123: 40% bucket 122: 100% Sorting block of length 390728 for bucket 122 (Using difference cover) bucket 112: 80% bucket 126: 90% bucket 113: 80% bucket 114: 80% bucket 118: 70% bucket 129: 80% bucket 135: 10% bucket 133: 60% bucket 128: 40% bucket 130: 40% Sorting block time: 00:00:01 Returning block of 390729 for bucket 122 bucket 136: 20% bucket 121: 50% Getting block 140 of 207 Reserving size (4887258) for bucket 140 Calculating Z arrays for bucket 140 Entering block accumulator loop for bucket 140: bucket 127: 40% bucket 131: 30% bucket 134: 60% bucket 122: 50% bucket 120: 60% bucket 116: 80% bucket 131: 80% Sorting block time: 00:00:04 Returning block of 4678807 for bucket 113 bucket 132: 30% bucket 126: 40% bucket 115: 80% bucket 137: 20% bucket 133: 30% Getting block 141 of 207 Reserving size (4887258) for bucket 141 Calculating Z arrays for bucket 141 Entering block accumulator loop for bucket 141: bucket 119: 70% bucket 125: 40% bucket 132: 70% bucket 138: 20% bucket 129: 40% bucket 128: 90% bucket 110: 100% Sorting block of length 4424256 for bucket 110 (Using difference cover) bucket 130: 80% bucket 111: 90% bucket 124: 50% bucket 123: 100% Sorting block of length 2494698 for bucket 123 (Using difference cover) bucket 134: 20% bucket 127: 90% bucket 109: 100% Sorting block of length 2629282 for bucket 109 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3960388 for bucket 116 bucket 117: 90% Getting block 142 of 207 Reserving size (4887258) for bucket 142 Calculating Z arrays for bucket 142 Entering block accumulator loop for bucket 142: bucket 125: 100% Sorting block of length 3980406 for bucket 125 (Using difference cover) bucket 135: 60% bucket 121: 60% bucket 123: 50% bucket 112: 90% bucket 118: 80% bucket 128: 50% bucket 139: 10% bucket 127: 50% bucket 113: 90% bucket 136: 30% bucket 124: 100% Sorting block of length 4029565 for bucket 124 (Using difference cover) bucket 126: 100% Sorting block of length 1222831 for bucket 126 (Using difference cover) bucket 114: 90% bucket 130: 50% bucket 135: 20% Sorting block time: 00:00:04 Returning block of 4444526 for bucket 114 bucket 129: 90% bucket 115: 90% bucket 125: 50% Getting block 143 of 207 Reserving size (4887258) for bucket 143 Calculating Z arrays for bucket 143 Entering block accumulator loop for bucket 143: bucket 131: 40% bucket 122: 60% bucket 140: 10% bucket 133: 70% bucket 126: 50% Sorting block time: 00:00:05 Returning block of 4883285 for bucket 111 bucket 120: 70% bucket 116: 90% bucket 132: 40% bucket 133: 40% bucket 134: 70% bucket 111: 100% Sorting block of length 3501768 for bucket 111 (Using difference cover) bucket 119: 80% Sorting block time: 00:00:05 Returning block of 4610529 for bucket 115 Getting block 144 of 207 Reserving size (4887258) for bucket 144 Calculating Z arrays for bucket 144 Entering block accumulator loop for bucket 144: bucket 129: 50% bucket 127: 60% bucket 141: 10% Sorting block time: 00:00:04 Returning block of 4839183 for bucket 118 bucket 137: 30% bucket 131: 90% bucket 135: 70% Getting block 145 of 207 Reserving size (4887258) for bucket 145 Calculating Z arrays for bucket 145 Entering block accumulator loop for bucket 145: bucket 132: 80% bucket 134: 30% bucket 138: 30% bucket 128: 100% Sorting block of length 4158427 for bucket 128 (Using difference cover) Sorting block time: 00:00:03 Returning block of 2149668 for bucket 120 bucket 124: 60% bucket 127: 100% Sorting block of length 4752318 for bucket 127 (Using difference cover) Getting block 146 of 207 Reserving size (4887258) for bucket 146 Calculating Z arrays for bucket 146 Entering block accumulator loop for bucket 146: Getting block 147 of 207 Reserving size (4887258) for bucket 147 Calculating Z arrays for bucket 147 Entering block accumulator loop for bucket 147: Sorting block time: 00:00:05 Returning block of 3933387 for bucket 119 bucket 130: 90% bucket 117: 100% Sorting block of length 4331441 for bucket 117 (Using difference cover) bucket 135: 30% bucket 115: 100% Sorting block of length 3015020 for bucket 115 (Using difference cover) bucket 121: 70% Getting block 148 of 207 Reserving size (4887258) for bucket 148 Calculating Z arrays for bucket 148 Entering block accumulator loop for bucket 148: Sorting block time: 00:00:02 Returning block of 1222832 for bucket 126 Getting block 149 of 207 Reserving size (4887258) for bucket 149 Calculating Z arrays for bucket 149 Entering block accumulator loop for bucket 149: bucket 113: 100% Sorting block of length 4803011 for bucket 113 (Using difference cover) bucket 128: 60% bucket 123: 60% bucket 118: 90% bucket 130: 60% bucket 112: 100% Sorting block of length 4637614 for bucket 112 (Using difference cover) bucket 142: 10% Sorting block time: 00:00:02 Returning block of 2494699 for bucket 123 bucket 136: 40% bucket 139: 20% Getting block 150 of 207 Reserving size (4887258) for bucket 150 Calculating Z arrays for bucket 150 Entering block accumulator loop for bucket 150: Sorting block time: 00:00:02 Returning block of 2629283 for bucket 109 bucket 114: 100% Sorting block of length 2707080 for bucket 114 (Using difference cover) Getting block 136 of 211 Reserving size (4887258) for bucket 136 Calculating Z arrays for bucket 136 Entering block accumulator loop for bucket 136: bucket 129: 100% Sorting block of length 2822367 for bucket 129 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4512077 for bucket 121 bucket 131: 50% bucket 126: 60% bucket 122: 70% bucket 125: 60% bucket 116: 100% Sorting block of length 4034320 for bucket 116 (Using difference cover) bucket 143: 10% bucket 132: 50% Getting block 151 of 207 Reserving size (4887258) for bucket 151 Calculating Z arrays for bucket 151 Entering block accumulator loop for bucket 151: bucket 133: 50% bucket 129: 60% bucket 127: 70% bucket 120: 80% bucket 133: 80% bucket 146: 10% bucket 140: 20% bucket 123: 70% bucket 119: 90% bucket 147: 10% bucket 134: 40% bucket 144: 10% bucket 145: 10% bucket 141: 20% bucket 132: 90% bucket 124: 70% bucket 135: 40% bucket 138: 40% bucket 134: 80% bucket 135: 80% bucket 118: 100% Sorting block of length 982044 for bucket 118 (Using difference cover) bucket 139: 30% bucket 130: 70% bucket 131: 100% Sorting block of length 3073530 for bucket 131 (Using difference cover) bucket 121: 80% bucket 128: 70% bucket 137: 40% bucket 130: 100% Sorting block of length 4373613 for bucket 130 (Using difference cover) Sorting block time: 00:00:01 Returning block of 982045 for bucket 118 Getting block 137 of 211 Reserving size (4887258) for bucket 137 Calculating Z arrays for bucket 137 Entering block accumulator loop for bucket 137: bucket 148: 10% Sorting block time: 00:00:04 Returning block of 3980407 for bucket 125 bucket 125: 70% bucket 149: 10% bucket 136: 50% bucket 150: 10% bucket 129: 70% bucket 136: 10% Getting block 152 of 207 Reserving size (4887258) for bucket 152 Calculating Z arrays for bucket 152 Entering block accumulator loop for bucket 152: bucket 142: 20% bucket 126: 70% Sorting block time: 00:00:04 Returning block of 4029566 for bucket 124 Sorting block time: 00:00:02 Returning block of 3015021 for bucket 115 bucket 143: 20% bucket 131: 60% bucket 130: 80% bucket 122: 80% Getting block 138 of 211 Reserving size (4887258) for bucket 138 Calculating Z arrays for bucket 138 Entering block accumulator loop for bucket 138: Sorting block time: 00:00:05 Returning block of 4424257 for bucket 110 Sorting block time: 00:00:03 Returning block of 3501769 for bucket 111 bucket 127: 80% bucket 133: 60% Getting block 153 of 207 Reserving size (4887258) for bucket 153 Calculating Z arrays for bucket 153 Entering block accumulator loop for bucket 153: Getting block 139 of 211 Reserving size (4887258) for bucket 139 Calculating Z arrays for bucket 139 Entering block accumulator loop for bucket 139: bucket 132: 60% Getting block 140 of 211 Reserving size (4887258) for bucket 140 Calculating Z arrays for bucket 140 Entering block accumulator loop for bucket 140: bucket 120: 90% bucket 151: 10% bucket 146: 20% bucket 123: 80% bucket 134: 50% bucket 133: 90% bucket 119: 100% Sorting block of length 4835711 for bucket 119 (Using difference cover) bucket 135: 50% bucket 124: 80% bucket 145: 20% bucket 128: 80% bucket 132: 100% Sorting block of length 3644970 for bucket 132 (Using difference cover) bucket 138: 50% bucket 121: 90% bucket 137: 10% Sorting block time: 00:00:03 Returning block of 2822368 for bucket 129 bucket 141: 30% bucket 147: 20% bucket 139: 40% bucket 140: 30% bucket 135: 90% Sorting block time: 00:00:03 Returning block of 2707081 for bucket 114 bucket 129: 80% Getting block 154 of 207 Reserving size (4887258) for bucket 154 Calculating Z arrays for bucket 154 Entering block accumulator loop for bucket 154: bucket 134: 90% bucket 144: 20% bucket 143: 30% Getting block 141 of 211 Reserving size (4887258) for bucket 141 Calculating Z arrays for bucket 141 Entering block accumulator loop for bucket 141: bucket 137: 50% bucket 125: 80% bucket 136: 60% Sorting block time: 00:00:05 Returning block of 4158428 for bucket 128 bucket 136: 20% bucket 148: 20% bucket 122: 90% bucket 150: 20% Getting block 155 of 207 Reserving size (4887258) for bucket 155 Calculating Z arrays for bucket 155 Entering block accumulator loop for bucket 155: bucket 130: 90% bucket 131: 70% Sorting block time: 00:00:04 Returning block of 4034321 for bucket 116 bucket 126: 80% bucket 127: 90% bucket 138: 10% bucket 132: 70% bucket 139: 10% Sorting block time: 00:00:04 Returning block of 4803012 for bucket 113 bucket 149: 20% bucket 137: 20% Getting block 142 of 211 Reserving size (4887258) for bucket 142 Calculating Z arrays for bucket 142 Entering block accumulator loop for bucket 142: bucket 133: 70% bucket 128: 90% bucket 152: 10% bucket 142: 30% bucket 140: 10% bucket 134: 60% bucket 151: 20% Sorting block time: 00:00:04 Returning block of 4331442 for bucket 117 bucket 123: 90% Getting block 143 of 211 Reserving size (4887258) for bucket 143 Calculating Z arrays for bucket 143 Entering block accumulator loop for bucket 143: bucket 120: 100% Sorting block of length 3456694 for bucket 120 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4752319 for bucket 127 bucket 146: 30% Getting block 144 of 211 Reserving size (4887258) for bucket 144 Calculating Z arrays for bucket 144 Entering block accumulator loop for bucket 144: bucket 135: 60% Getting block 156 of 207 Reserving size (4887258) for bucket 156 Calculating Z arrays for bucket 156 Entering block accumulator loop for bucket 156: bucket 133: 100% Sorting block of length 3530675 for bucket 133 (Using difference cover) bucket 153: 10% bucket 129: 90% bucket 121: 100% Sorting block of length 1701154 for bucket 121 (Using difference cover) bucket 124: 90% Sorting block time: 00:00:05 Returning block of 4637615 for bucket 112 Sorting block time: 00:00:04 Returning block of 3073531 for bucket 131 bucket 145: 30% bucket 138: 60% bucket 135: 100% Sorting block of length 4415644 for bucket 135 (Using difference cover) bucket 144: 30% Getting block 145 of 211 Reserving size (4887258) for bucket 145 Calculating Z arrays for bucket 145 Entering block accumulator loop for bucket 145: Getting block 157 of 207 Reserving size (4887258) for bucket 157 Calculating Z arrays for bucket 157 Entering block accumulator loop for bucket 157: bucket 154: 10% bucket 139: 50% bucket 143: 40% bucket 141: 10% bucket 136: 70% bucket 141: 40% bucket 137: 60% bucket 140: 40% bucket 125: 90% bucket 147: 30% bucket 134: 100% Sorting block of length 2826071 for bucket 134 (Using difference cover) bucket 122: 100% Sorting block of length 4496680 for bucket 122 (Using difference cover) bucket 136: 30% bucket 123: 100% Sorting block of length 4828442 for bucket 123 (Using difference cover) bucket 131: 80% bucket 130: 100% Sorting block of length 4831220 for bucket 130 (Using difference cover) bucket 128: 100% Sorting block of length 4292509 for bucket 128 (Using difference cover) bucket 127: 100% Sorting block of length 2735289 for bucket 127 (Using difference cover) bucket 134: 70% bucket 155: 10% bucket 150: 30% bucket 138: 20% bucket 151: 30% bucket 148: 30% bucket 139: 20% bucket 132: 80% bucket 126: 90% Sorting block time: 00:00:04 Returning block of 4373614 for bucket 130 bucket 137: 30% bucket 146: 40% bucket 133: 80% bucket 142: 10% Getting block 158 of 207 Reserving size (4887258) for bucket 158 Calculating Z arrays for bucket 158 Entering block accumulator loop for bucket 158: Sorting block time: 00:00:01 Returning block of 1701155 for bucket 121 bucket 142: 40% Sorting block time: 00:00:03 Returning block of 3644971 for bucket 132 Getting block 146 of 211 Reserving size (4887258) for bucket 146 Calculating Z arrays for bucket 146 Entering block accumulator loop for bucket 146: bucket 140: 20% bucket 145: 40% bucket 144: 10% bucket 152: 20% bucket 143: 10% bucket 149: 30% bucket 135: 70% Getting block 159 of 207 Reserving size (4887258) for bucket 159 Calculating Z arrays for bucket 159 Entering block accumulator loop for bucket 159: bucket 129: 100% Sorting block of length 2605792 for bucket 129 (Using difference cover) bucket 139: 60% bucket 156: 10% bucket 124: 100% Sorting block of length 3527076 for bucket 124 (Using difference cover) bucket 154: 20% bucket 125: 100% Sorting block of length 2405633 for bucket 125 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4835712 for bucket 119 bucket 138: 70% bucket 145: 10% Getting block 147 of 211 Reserving size (4887258) for bucket 147 Calculating Z arrays for bucket 147 Entering block accumulator loop for bucket 147: bucket 143: 50% bucket 153: 20% bucket 139: 30% bucket 136: 40% bucket 136: 80% bucket 140: 50% bucket 141: 20% bucket 157: 10% bucket 131: 90% bucket 137: 70% bucket 144: 40% bucket 147: 40% bucket 141: 50% bucket 146: 50% bucket 155: 20% Sorting block time: 00:00:03 Returning block of 3456695 for bucket 120 bucket 138: 30% bucket 150: 40% bucket 134: 80% Getting block 148 of 211 Reserving size (4887258) for bucket 148 Calculating Z arrays for bucket 148 Entering block accumulator loop for bucket 148: bucket 135: 80% bucket 132: 90% bucket 151: 40% bucket 137: 40% bucket 126: 100% Sorting block of length 3893937 for bucket 126 (Using difference cover) bucket 148: 40% bucket 142: 20% bucket 146: 10% bucket 133: 90% Sorting block time: 00:00:03 Returning block of 4292510 for bucket 128 bucket 144: 20% bucket 158: 10% bucket 142: 50% bucket 145: 50% bucket 159: 10% Getting block 149 of 211 Reserving size (4887258) for bucket 149 Calculating Z arrays for bucket 149 Entering block accumulator loop for bucket 149: bucket 143: 20% Sorting block time: 00:00:02 Returning block of 2735290 for bucket 127 bucket 138: 80% Sorting block time: 00:00:03 Returning block of 2826072 for bucket 134 bucket 140: 30% Getting block 150 of 211 Reserving size (4887258) for bucket 150 Calculating Z arrays for bucket 150 Entering block accumulator loop for bucket 150: bucket 152: 30% bucket 139: 70% bucket 156: 20% Getting block 160 of 207 Reserving size (4887258) for bucket 160 Calculating Z arrays for bucket 160 Entering block accumulator loop for bucket 160: bucket 154: 30% bucket 149: 40% bucket 145: 20% bucket 139: 40% Sorting block time: 00:00:03 Returning block of 2605793 for bucket 129 bucket 147: 10% bucket 136: 50% bucket 131: 100% Sorting block of length 4303823 for bucket 131 (Using difference cover) Getting block 151 of 211 Reserving size (4887258) for bucket 151 Calculating Z arrays for bucket 151 Entering block accumulator loop for bucket 151: bucket 147: 50% bucket 143: 60% Sorting block time: 00:00:04 Returning block of 3530676 for bucket 133 bucket 136: 90% bucket 135: 90% bucket 146: 60% bucket 141: 30% Getting block 161 of 207 Reserving size (4887258) for bucket 161 Calculating Z arrays for bucket 161 Entering block accumulator loop for bucket 161: Sorting block time: 00:00:02 Returning block of 2405634 for bucket 125 bucket 140: 60% bucket 137: 80% bucket 153: 30% bucket 157: 20% Getting block 152 of 211 Reserving size (4887258) for bucket 152 Calculating Z arrays for bucket 152 Entering block accumulator loop for bucket 152: bucket 144: 50% bucket 146: 20% bucket 141: 60% bucket 138: 40% Sorting block time: 00:00:04 Returning block of 4831221 for bucket 130 bucket 155: 30% bucket 145: 60% bucket 132: 100% Sorting block of length 765501 for bucket 132 (Using difference cover) bucket 134: 90% bucket 137: 50% Sorting block time: 00:00:04 Returning block of 4496681 for bucket 122 bucket 148: 10% bucket 150: 50% Getting block 153 of 211 Reserving size (4887258) for bucket 153 Calculating Z arrays for bucket 153 Entering block accumulator loop for bucket 153: bucket 151: 50% Getting block 154 of 211 Reserving size (4887258) for bucket 154 Calculating Z arrays for bucket 154 Entering block accumulator loop for bucket 154: Sorting block time: 00:00:05 Returning block of 4415645 for bucket 135 bucket 133: 100% Sorting block of length 4413815 for bucket 133 (Using difference cover) Sorting block time: 00:00:04 Returning block of 3527077 for bucket 124 bucket 144: 30% bucket 148: 50% bucket 142: 30% Getting block 155 of 211 Reserving size (4887258) for bucket 155 Calculating Z arrays for bucket 155 Entering block accumulator loop for bucket 155: Sorting block time: 00:00:05 Returning block of 4828443 for bucket 123 Getting block 162 of 207 Reserving size (4887258) for bucket 162 Calculating Z arrays for bucket 162 Entering block accumulator loop for bucket 162: bucket 139: 50% bucket 149: 10% bucket 142: 60% bucket 159: 20% bucket 158: 20% Getting block 156 of 211 Reserving size (4887258) for bucket 156 Calculating Z arrays for bucket 156 Entering block accumulator loop for bucket 156: Sorting block time: 00:00:01 Returning block of 765502 for bucket 132 bucket 138: 90% bucket 156: 30% Getting block 157 of 211 Reserving size (4887258) for bucket 157 Calculating Z arrays for bucket 157 Entering block accumulator loop for bucket 157: bucket 143: 30% bucket 140: 40% bucket 139: 80% bucket 160: 10% bucket 154: 40% bucket 150: 10% bucket 145: 30% bucket 152: 40% bucket 149: 50% bucket 136: 60% bucket 151: 10% bucket 147: 20% bucket 135: 100% Sorting block of length 4884394 for bucket 135 (Using difference cover) bucket 143: 70% bucket 136: 100% Sorting block of length 2023200 for bucket 136 (Using difference cover) bucket 147: 60% bucket 141: 40% bucket 146: 70% bucket 161: 10% bucket 152: 10% bucket 162: 10% bucket 146: 30% bucket 138: 50% bucket 157: 30% bucket 140: 70% bucket 137: 90% bucket 144: 60% bucket 153: 40% bucket 134: 100% Sorting block of length 4560266 for bucket 134 (Using difference cover) bucket 155: 40% bucket 137: 60% bucket 145: 70% bucket 139: 60% bucket 153: 10% bucket 141: 70% bucket 150: 60% bucket 154: 10% bucket 148: 20% bucket 144: 40% bucket 151: 60% bucket 155: 10% bucket 142: 40% bucket 148: 60% bucket 149: 20% Sorting block time: 00:00:03 Returning block of 4303824 for bucket 131 bucket 143: 80% Sorting block time: 00:00:04 Returning block of 3893938 for bucket 126 bucket 156: 10% bucket 142: 70% bucket 159: 30% Getting block 158 of 211 Reserving size (4887258) for bucket 158 Calculating Z arrays for bucket 158 Entering block accumulator loop for bucket 158: Getting block 159 of 211 Reserving size (4887258) for bucket 159 Calculating Z arrays for bucket 159 Entering block accumulator loop for bucket 159: bucket 143: 40% bucket 156: 40% bucket 157: 10% bucket 138: 100% Sorting block of length 1830197 for bucket 138 (Using difference cover) bucket 140: 50% bucket 158: 30% bucket 154: 50% bucket 145: 40% bucket 151: 20% bucket 160: 20% bucket 139: 90% bucket 136: 70% bucket 150: 20% bucket 152: 50% bucket 147: 30% Sorting block time: 00:00:01 Returning block of 2023201 for bucket 136 bucket 149: 60% Getting block 163 of 207 Reserving size (4887258) for bucket 163 Calculating Z arrays for bucket 163 Entering block accumulator loop for bucket 163: bucket 141: 50% bucket 144: 70% bucket 146: 80% bucket 146: 40% bucket 161: 20% bucket 162: 20% bucket 138: 60% bucket 152: 20% bucket 147: 70% bucket 149: 30% bucket 140: 80% Sorting block time: 00:00:03 Returning block of 4413816 for bucket 133 bucket 157: 40% bucket 137: 70% bucket 155: 50% bucket 139: 70% Getting block 160 of 211 Reserving size (4887258) for bucket 160 Calculating Z arrays for bucket 160 Entering block accumulator loop for bucket 160: bucket 137: 100% Sorting block of length 4679357 for bucket 137 (Using difference cover) bucket 153: 20% bucket 141: 80% bucket 145: 80% bucket 154: 20% bucket 144: 50% bucket 150: 70% bucket 153: 50% bucket 155: 20% bucket 148: 30% bucket 143: 90% bucket 151: 70% Sorting block time: 00:00:01 Returning block of 1830198 for bucket 138 Getting block 164 of 207 Reserving size (4887258) for bucket 164 Calculating Z arrays for bucket 164 Entering block accumulator loop for bucket 164: bucket 158: 10% bucket 142: 50% bucket 156: 20% bucket 148: 70% bucket 159: 10% bucket 143: 50% bucket 159: 40% bucket 156: 50% bucket 157: 20% bucket 142: 80% bucket 154: 60% bucket 145: 50% bucket 151: 30% bucket 140: 60% bucket 158: 40% bucket 136: 80% bucket 160: 30% bucket 139: 100% Sorting block of length 4352597 for bucket 139 (Using difference cover) bucket 147: 40% bucket 146: 90% bucket 163: 10% bucket 150: 30% bucket 152: 30% bucket 149: 70% bucket 141: 60% bucket 146: 50% bucket 152: 60% bucket 153: 30% bucket 138: 70% bucket 149: 40% bucket 144: 80% bucket 161: 30% bucket 162: 30% bucket 147: 80% bucket 157: 30% bucket 137: 80% bucket 139: 80% bucket 140: 90% bucket 155: 60% bucket 160: 10% bucket 144: 60% bucket 157: 50% bucket 150: 80% bucket 154: 30% Sorting block time: 00:00:04 Returning block of 4884395 for bucket 135 Sorting block time: 00:00:04 Returning block of 4560267 for bucket 134 bucket 145: 90% bucket 164: 10% bucket 155: 30% bucket 148: 40% Getting block 161 of 211 Reserving size (4887258) for bucket 161 Calculating Z arrays for bucket 161 Entering block accumulator loop for bucket 161: Getting block 162 of 211 Reserving size (4887258) for bucket 162 Calculating Z arrays for bucket 162 Entering block accumulator loop for bucket 162: bucket 143: 100% Sorting block of length 3773367 for bucket 143 (Using difference cover) bucket 151: 80% bucket 141: 90% bucket 156: 30% bucket 158: 20% bucket 153: 60% bucket 159: 50% bucket 143: 60% bucket 148: 80% bucket 156: 60% bucket 159: 20% bucket 154: 70% bucket 142: 60% bucket 151: 40% bucket 142: 90% bucket 136: 90% bucket 158: 50% bucket 140: 70% bucket 145: 60% bucket 160: 40% bucket 153: 40% bucket 147: 50% bucket 141: 70% bucket 163: 20% bucket 146: 100% Sorting block of length 3405050 for bucket 146 (Using difference cover) bucket 146: 60% bucket 138: 80% bucket 149: 50% bucket 152: 40% bucket 149: 80% bucket 150: 90% bucket 157: 60% bucket 150: 40% bucket 152: 70% bucket 145: 100% Sorting block of length 4042109 for bucket 145 (Using difference cover) bucket 157: 40% bucket 162: 40% bucket 161: 40% bucket 144: 90% bucket 139: 90% bucket 137: 90% bucket 161: 10% bucket 147: 90% bucket 160: 20% bucket 144: 70% bucket 155: 70% bucket 154: 40% bucket 140: 100% Sorting block of length 3138721 for bucket 140 (Using difference cover) bucket 155: 40% bucket 148: 50% bucket 164: 20% bucket 162: 10% bucket 158: 30% bucket 159: 60% bucket 156: 40% bucket 151: 90% bucket 143: 70% bucket 141: 100% Sorting block of length 3529160 for bucket 141 (Using difference cover) bucket 159: 30% Sorting block time: 00:00:04 Returning block of 4679358 for bucket 137 bucket 146: 70% bucket 156: 70% bucket 151: 50% bucket 154: 80% bucket 148: 90% bucket 153: 70% bucket 136: 100% Sorting block of length 3061901 for bucket 136 (Using difference cover) bucket 142: 70% Getting block 165 of 207 Reserving size (4887258) for bucket 165 Calculating Z arrays for bucket 165 Entering block accumulator loop for bucket 165: bucket 145: 70% bucket 140: 80% bucket 142: 100% Sorting block of length 2446934 for bucket 142 (Using difference cover) bucket 158: 60% bucket 139: 100% Sorting block of length 4275371 for bucket 139 (Using difference cover) bucket 153: 50% bucket 160: 50% bucket 141: 80% bucket 147: 60% bucket 138: 90% bucket 163: 30% bucket 152: 50% bucket 149: 60% bucket 154: 50% bucket 157: 70% bucket 150: 100% Sorting block of length 4679939 for bucket 150 (Using difference cover) bucket 162: 50% bucket 149: 90% bucket 161: 50% bucket 157: 50% bucket 137: 100% Sorting block of length 2780747 for bucket 137 (Using difference cover) bucket 150: 50% bucket 144: 100% Sorting block of length 3519802 for bucket 144 (Using difference cover) bucket 152: 80% bucket 161: 20% bucket 162: 20% bucket 144: 80% bucket 155: 80% bucket 147: 100% Sorting block of length 4327775 for bucket 147 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4352598 for bucket 139 bucket 160: 30% bucket 155: 50% Getting block 166 of 207 Reserving size (4887258) for bucket 166 Calculating Z arrays for bucket 166 Entering block accumulator loop for bucket 166: bucket 148: 60% bucket 164: 30% Sorting block time: 00:00:04 Returning block of 3773368 for bucket 143 bucket 158: 40% bucket 143: 80% Getting block 167 of 207 Reserving size (4887258) for bucket 167 Calculating Z arrays for bucket 167 Entering block accumulator loop for bucket 167: bucket 154: 60% bucket 156: 50% bucket 140: 90% bucket 159: 70% bucket 156: 80% bucket 146: 80% bucket 151: 100% Sorting block of length 2994499 for bucket 151 (Using difference cover) bucket 151: 60% bucket 154: 90% Sorting block time: 00:00:03 Returning block of 3405051 for bucket 146 bucket 159: 40% bucket 145: 80% bucket 148: 100% Sorting block of length 2983123 for bucket 148 (Using difference cover) Getting block 168 of 207 Reserving size (4887258) for bucket 168 Calculating Z arrays for bucket 168 Entering block accumulator loop for bucket 168: bucket 142: 80% bucket 153: 60% bucket 158: 70% Sorting block time: 00:00:02 Returning block of 3138722 for bucket 140 bucket 141: 90% bucket 160: 60% bucket 153: 80% bucket 165: 10% bucket 147: 70% Getting block 169 of 207 Reserving size (4887258) for bucket 169 Calculating Z arrays for bucket 169 Entering block accumulator loop for bucket 169: bucket 138: 100% Sorting block of length 3825785 for bucket 138 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2446935 for bucket 142 bucket 155: 60% bucket 152: 60% bucket 163: 40% bucket 149: 70% Getting block 170 of 207 Reserving size (4887258) for bucket 170 Calculating Z arrays for bucket 170 Entering block accumulator loop for bucket 170: bucket 157: 80% bucket 161: 60% bucket 150: 60% bucket 162: 60% bucket 157: 60% bucket 161: 30% bucket 162: 30% bucket 149: 100% Sorting block of length 4649000 for bucket 149 (Using difference cover) bucket 152: 90% bucket 144: 90% Sorting block time: 00:00:04 Returning block of 4042110 for bucket 145 bucket 160: 40% bucket 155: 90% Sorting block time: 00:00:03 Returning block of 3061902 for bucket 136 Getting block 171 of 207 Reserving size (4887258) for bucket 171 Calculating Z arrays for bucket 171 Entering block accumulator loop for bucket 171: Getting block 163 of 211 Reserving size (4887258) for bucket 163 Calculating Z arrays for bucket 163 Entering block accumulator loop for bucket 163: bucket 164: 40% bucket 166: 10% Sorting block time: 00:00:03 Returning block of 3529161 for bucket 141 bucket 148: 70% Sorting block time: 00:00:03 Returning block of 2780748 for bucket 137 bucket 158: 50% Getting block 172 of 207 Reserving size (4887258) for bucket 172 Calculating Z arrays for bucket 172 Entering block accumulator loop for bucket 172: bucket 143: 90% Getting block 164 of 211 Reserving size (4887258) for bucket 164 Calculating Z arrays for bucket 164 Entering block accumulator loop for bucket 164: bucket 156: 60% bucket 154: 70% bucket 167: 10% bucket 159: 80% bucket 146: 90% bucket 140: 100% Sorting block of length 2981725 for bucket 140 (Using difference cover) bucket 156: 90% bucket 151: 70% bucket 154: 100% Sorting block of length 4725426 for bucket 154 (Using difference cover) bucket 159: 50% bucket 160: 70% bucket 145: 90% bucket 142: 90% bucket 141: 100% Sorting block of length 3304219 for bucket 141 (Using difference cover) bucket 153: 70% bucket 168: 10% bucket 152: 70% bucket 158: 80% Sorting block time: 00:00:03 Returning block of 4275372 for bucket 139 bucket 147: 80% bucket 163: 50% bucket 155: 70% bucket 165: 20% bucket 169: 10% Getting block 165 of 211 Reserving size (4887258) for bucket 165 Calculating Z arrays for bucket 165 Entering block accumulator loop for bucket 165: bucket 149: 80% bucket 157: 70% Sorting block time: 00:00:04 Returning block of 3519803 for bucket 144 bucket 153: 90% bucket 170: 10% bucket 162: 40% bucket 155: 100% Sorting block of length 4450035 for bucket 155 (Using difference cover) bucket 164: 50% bucket 157: 90% bucket 161: 40% bucket 162: 70% bucket 160: 50% bucket 161: 70% bucket 144: 100% Sorting block of length 1129030 for bucket 144 (Using difference cover) bucket 150: 70% bucket 152: 100% Sorting block of length 3084686 for bucket 152 (Using difference cover) Sorting block time: 00:00:04 Returning block of 4327776 for bucket 147 bucket 163: 10% bucket 154: 80% Sorting block time: 00:00:03 Returning block of 2994500 for bucket 151 bucket 171: 10% bucket 148: 80% Getting block 173 of 207 Reserving size (4887258) for bucket 173 Calculating Z arrays for bucket 173 Entering block accumulator loop for bucket 173: bucket 158: 60% Getting block 174 of 207 Reserving size (4887258) for bucket 174 Calculating Z arrays for bucket 174 Entering block accumulator loop for bucket 174: bucket 143: 100% Sorting block of length 4728533 for bucket 143 (Using difference cover) bucket 159: 60% bucket 166: 20% bucket 164: 10% Getting block 175 of 207 Reserving size (4887258) for bucket 175 Calculating Z arrays for bucket 175 Entering block accumulator loop for bucket 175: bucket 172: 10% bucket 156: 100% Sorting block of length 3472700 for bucket 156 (Using difference cover) bucket 146: 100% Sorting block of length 7827638 for bucket 146 (Using difference cover) bucket 156: 70% bucket 167: 20% bucket 145: 100% Sorting block of length 89637 for bucket 145 (Using difference cover) bucket 159: 90% bucket 151: 80% bucket 170: 20% bucket 142: 100% Sorting block of length 1667807 for bucket 142 (Using difference cover) Sorting block time: 00:00:00 Returning block of 89638 for bucket 145 Getting block 166 of 211 Reserving size (4887258) for bucket 166 Calculating Z arrays for bucket 166 Entering block accumulator loop for bucket 166: Sorting block time: 00:00:05 Returning block of 4679940 for bucket 150 bucket 152: 80% bucket 160: 80% bucket 153: 80% bucket 147: 90% bucket 158: 90% bucket 157: 80% Getting block 176 of 207 Reserving size (4887258) for bucket 176 Calculating Z arrays for bucket 176 Entering block accumulator loop for bucket 176: bucket 153: 100% Sorting block of length 4543099 for bucket 153 (Using difference cover) bucket 168: 20% Sorting block time: 00:00:04 Returning block of 2983124 for bucket 148 bucket 149: 90% bucket 163: 60% bucket 155: 80% Sorting block time: 00:00:02 Returning block of 2981726 for bucket 140 bucket 169: 20% bucket 165: 10% Sorting block time: 00:00:03 Returning block of 3825786 for bucket 138 bucket 165: 30% bucket 162: 50% bucket 164: 60% bucket 161: 50% bucket 159: 70% bucket 160: 60% bucket 161: 80% bucket 157: 100% Sorting block of length 3525204 for bucket 157 (Using difference cover) bucket 162: 80% bucket 150: 80% Sorting block time: 00:00:03 Returning block of 3304220 for bucket 141 bucket 163: 20% Sorting block time: 00:00:02 Returning block of 1129031 for bucket 144 bucket 154: 90% bucket 173: 10% bucket 148: 90% bucket 158: 70% bucket 171: 20% bucket 172: 20% bucket 166: 30% Getting block 177 of 207 Reserving size (4887258) for bucket 177 Calculating Z arrays for bucket 177 Entering block accumulator loop for bucket 177: bucket 158: 100% Sorting block of length 2406684 for bucket 158 (Using difference cover) bucket 175: 10% bucket 166: 10% Getting block 167 of 211 Reserving size (4887258) for bucket 167 Calculating Z arrays for bucket 167 Entering block accumulator loop for bucket 167: Getting block 168 of 211 Reserving size (4887258) for bucket 168 Calculating Z arrays for bucket 168 Entering block accumulator loop for bucket 168: Sorting block time: 00:00:01 Returning block of 1667808 for bucket 142 bucket 159: 80% bucket 156: 80% bucket 164: 20% Getting block 169 of 211 Reserving size (4887258) for bucket 169 Calculating Z arrays for bucket 169 Entering block accumulator loop for bucket 169: bucket 157: 90% bucket 167: 30% bucket 151: 90% Getting block 170 of 211 Reserving size (4887258) for bucket 170 Calculating Z arrays for bucket 170 Entering block accumulator loop for bucket 170: bucket 174: 10% Getting block 171 of 211 Reserving size (4887258) for bucket 171 Calculating Z arrays for bucket 171 Entering block accumulator loop for bucket 171: bucket 159: 100% Sorting block of length 4466776 for bucket 159 (Using difference cover) bucket 170: 30% bucket 149: 100% Sorting block of length 1698559 for bucket 149 (Using difference cover) bucket 162: 60% bucket 147: 100% Sorting block of length 2158037 for bucket 147 (Using difference cover) bucket 160: 70% bucket 153: 90% bucket 160: 90% bucket 152: 90% Sorting block time: 00:00:05 Returning block of 4649001 for bucket 149 Sorting block time: 00:00:03 Returning block of 3084687 for bucket 152 bucket 176: 10% bucket 155: 90% bucket 168: 30% bucket 163: 70% bucket 165: 20% Getting block 178 of 207 Reserving size (4887258) for bucket 178 Calculating Z arrays for bucket 178 Entering block accumulator loop for bucket 178: bucket 169: 30% Getting block 179 of 207 Reserving size (4887258) for bucket 179 Calculating Z arrays for bucket 179 Entering block accumulator loop for bucket 179: bucket 161: 60% bucket 165: 40% bucket 164: 70% bucket 161: 90% bucket 162: 90% bucket 163: 30% bucket 173: 20% bucket 170: 10% bucket 154: 100% Sorting block of length 3128610 for bucket 154 (Using difference cover) bucket 158: 80% bucket 148: 100% Sorting block of length 3861798 for bucket 148 (Using difference cover) Sorting block time: 00:00:05 Returning block of 4725427 for bucket 154 bucket 167: 10% Sorting block time: 00:00:03 Returning block of 3472701 for bucket 156 bucket 172: 30% bucket 150: 90% bucket 157: 100% Sorting block of length 3511525 for bucket 157 (Using difference cover) Getting block 180 of 207 Reserving size (4887258) for bucket 180 Calculating Z arrays for bucket 180 Entering block accumulator loop for bucket 180: bucket 169: 10% Getting block 181 of 207 Reserving size (4887258) for bucket 181 Calculating Z arrays for bucket 181 Entering block accumulator loop for bucket 181: bucket 171: 30% bucket 166: 20% bucket 168: 10% bucket 159: 90% bucket 166: 40% bucket 177: 10% bucket 175: 20% bucket 171: 10% bucket 156: 90% Sorting block time: 00:00:04 Returning block of 4450036 for bucket 155 bucket 151: 100% Sorting block of length 4813561 for bucket 151 (Using difference cover) bucket 174: 20% bucket 178: 10% bucket 164: 30% Sorting block time: 00:00:05 Returning block of 4728534 for bucket 143 bucket 160: 80% bucket 162: 70% bucket 167: 40% bucket 152: 100% Sorting block of length 1849185 for bucket 152 (Using difference cover) Getting block 182 of 207 Reserving size (4887258) for bucket 182 Calculating Z arrays for bucket 182 Entering block accumulator loop for bucket 182: bucket 170: 40% Sorting block time: 00:00:02 Returning block of 1698560 for bucket 149 bucket 153: 100% Sorting block of length 4197077 for bucket 153 (Using difference cover) Getting block 172 of 211 Reserving size (4887258) for bucket 172 Calculating Z arrays for bucket 172 Entering block accumulator loop for bucket 172: Getting block 173 of 211 Reserving size (4887258) for bucket 173 Calculating Z arrays for bucket 173 Entering block accumulator loop for bucket 173: bucket 160: 100% Sorting block of length 2335983 for bucket 160 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2158038 for bucket 147 Sorting block time: 00:00:04 Returning block of 4543100 for bucket 153 bucket 155: 100% Sorting block of length 3312692 for bucket 155 (Using difference cover) bucket 168: 40% bucket 163: 80% bucket 165: 30% Getting block 174 of 211 Reserving size (4887258) for bucket 174 Calculating Z arrays for bucket 174 Entering block accumulator loop for bucket 174: bucket 161: 70% bucket 165: 50% bucket 176: 20% bucket 169: 40% bucket 179: 10% Sorting block time: 00:00:03 Returning block of 2406685 for bucket 158 Getting block 183 of 207 Reserving size (4887258) for bucket 183 Calculating Z arrays for bucket 183 Entering block accumulator loop for bucket 183: bucket 159: 100% Sorting block of length 3153746 for bucket 159 (Using difference cover) bucket 164: 80% Getting block 184 of 207 Reserving size (4887258) for bucket 184 Calculating Z arrays for bucket 184 Entering block accumulator loop for bucket 184: bucket 167: 20% bucket 163: 40% Sorting block time: 00:00:03 Returning block of 3525205 for bucket 157 bucket 161: 100% Sorting block of length 4046478 for bucket 161 (Using difference cover) bucket 170: 20% bucket 162: 100% Sorting block of length 3564704 for bucket 162 (Using difference cover) bucket 158: 90% bucket 173: 30% Getting block 185 of 207 Reserving size (4887258) for bucket 185 Calculating Z arrays for bucket 185 Entering block accumulator loop for bucket 185: bucket 169: 20% bucket 180: 10% bucket 172: 40% bucket 181: 10% bucket 168: 20% bucket 166: 30% bucket 172: 10% bucket 150: 100% Sorting block of length 3750188 for bucket 150 (Using difference cover) bucket 166: 50% bucket 171: 40% bucket 177: 20% bucket 171: 20% bucket 162: 80% bucket 156: 100% Sorting block of length 4799671 for bucket 156 (Using difference cover) bucket 175: 30% bucket 160: 90% bucket 178: 20% Sorting block time: 00:00:01 Returning block of 1849186 for bucket 152 bucket 167: 50% bucket 174: 30% bucket 170: 50% bucket 164: 40% Getting block 175 of 211 Reserving size (4887258) for bucket 175 Calculating Z arrays for bucket 175 Entering block accumulator loop for bucket 175: bucket 173: 10% bucket 182: 10% bucket 174: 10% Sorting block time: 00:00:03 Returning block of 3861799 for bucket 148 Sorting block time: 00:00:03 Returning block of 3128611 for bucket 154 bucket 165: 60% bucket 161: 80% Getting block 176 of 211 Reserving size (4887258) for bucket 176 Calculating Z arrays for bucket 176 Entering block accumulator loop for bucket 176: bucket 168: 50% bucket 165: 40% Getting block 177 of 211 Reserving size (4887258) for bucket 177 Calculating Z arrays for bucket 177 Entering block accumulator loop for bucket 177: bucket 169: 50% bucket 163: 90% bucket 167: 30% bucket 183: 10% bucket 179: 20% bucket 158: 100% Sorting block of length 4512342 for bucket 158 (Using difference cover) bucket 163: 50% bucket 176: 30% bucket 170: 30% bucket 164: 90% bucket 184: 10% bucket 172: 20% Sorting block time: 00:00:04 Returning block of 4466777 for bucket 159 bucket 166: 40% bucket 185: 10% bucket 173: 40% Sorting block time: 00:00:02 Returning block of 2335984 for bucket 160 Getting block 186 of 207 Reserving size (4887258) for bucket 186 Calculating Z arrays for bucket 186 Entering block accumulator loop for bucket 186: Sorting block time: 00:00:04 Returning block of 3511526 for bucket 157 Getting block 187 of 207 Reserving size (4887258) for bucket 187 Calculating Z arrays for bucket 187 Entering block accumulator loop for bucket 187: bucket 169: 30% bucket 168: 30% Getting block 178 of 211 Reserving size (4887258) for bucket 178 Calculating Z arrays for bucket 178 Entering block accumulator loop for bucket 178: bucket 180: 20% bucket 181: 20% bucket 172: 50% bucket 160: 100% bucket 177: 30% Sorting block of length 4044759 for bucket 160 (Using difference cover) bucket 166: 60% bucket 171: 30% Sorting block time: 00:00:03 Returning block of 3153747 for bucket 159 bucket 162: 90% bucket 171: 50% Getting block 179 of 211 Reserving size (4887258) for bucket 179 Calculating Z arrays for bucket 179 Entering block accumulator loop for bucket 179: bucket 167: 40% bucket 175: 40% Sorting block time: 00:00:03 Returning block of 3312693 for bucket 155 bucket 178: 30% bucket 175: 10% bucket 173: 20% bucket 167: 60% Getting block 180 of 211 Reserving size (4887258) for bucket 180 Calculating Z arrays for bucket 180 Entering block accumulator loop for bucket 180: bucket 170: 60% bucket 174: 20% bucket 164: 50% bucket 161: 90% bucket 183: 20% bucket 174: 40% bucket 182: 20% bucket 177: 10% bucket 165: 70% bucket 176: 10% bucket 165: 50% bucket 169: 60% bucket 170: 40% bucket 163: 60% bucket 168: 60% bucket 179: 30% bucket 172: 30% bucket 163: 100% Sorting block of length 2561448 for bucket 163 (Using difference cover) bucket 184: 20% Sorting block time: 00:00:04 Returning block of 4046479 for bucket 161 bucket 166: 50% bucket 176: 40% Sorting block time: 00:00:05 Returning block of 4813562 for bucket 151 bucket 178: 40% bucket 164: 100% Sorting block of length 3572869 for bucket 164 (Using difference cover) Getting block 188 of 207 Reserving size (4887258) for bucket 188 Calculating Z arrays for bucket 188 Entering block accumulator loop for bucket 188: Sorting block time: 00:00:08 Returning block of 7827639 for bucket 146 bucket 185: 20% bucket 173: 50% Getting block 181 of 211 Reserving size (4887258) for bucket 181 Calculating Z arrays for bucket 181 Entering block accumulator loop for bucket 181: bucket 169: 40% Sorting block time: 00:00:03 Returning block of 3750189 for bucket 150 bucket 168: 40% Sorting block time: 00:00:04 Returning block of 4197078 for bucket 153 bucket 172: 60% bucket 178: 10% Getting block 182 of 211 Reserving size (4887258) for bucket 182 Calculating Z arrays for bucket 182 Entering block accumulator loop for bucket 182: Getting block 183 of 211 Reserving size (4887258) for bucket 183 Calculating Z arrays for bucket 183 Entering block accumulator loop for bucket 183: bucket 180: 30% bucket 181: 30% bucket 187: 10% bucket 177: 40% bucket 186: 10% Sorting block time: 00:00:05 Returning block of 3564705 for bucket 162 Getting block 184 of 211 Reserving size (4887258) for bucket 184 Calculating Z arrays for bucket 184 Entering block accumulator loop for bucket 184: bucket 171: 40% Getting block 189 of 207 Reserving size (4887258) for bucket 189 Calculating Z arrays for bucket 189 Entering block accumulator loop for bucket 189: bucket 166: 70% bucket 162: 100% Sorting block of length 4583425 for bucket 162 (Using difference cover) bucket 167: 50% bucket 179: 10% bucket 175: 20% bucket 173: 30% bucket 171: 60% bucket 175: 50% bucket 170: 50% bucket 174: 30% bucket 165: 80% bucket 167: 70% bucket 183: 30% bucket 170: 70% bucket 180: 10% bucket 161: 100% Sorting block of length 3757739 for bucket 161 (Using difference cover) bucket 164: 60% bucket 172: 40% bucket 177: 20% bucket 174: 50% bucket 179: 40% Sorting block time: 00:00:04 Returning block of 4512343 for bucket 158 bucket 176: 20% bucket 182: 30% bucket 163: 70% bucket 165: 60% bucket 169: 70% Getting block 185 of 211 Reserving size (4887258) for bucket 185 Calculating Z arrays for bucket 185 Entering block accumulator loop for bucket 185: bucket 168: 70% bucket 166: 60% bucket 184: 30% bucket 178: 50% bucket 176: 50% Sorting block time: 00:00:05 Returning block of 4799672 for bucket 156 bucket 168: 50% bucket 185: 30% bucket 169: 50% bucket 173: 60% bucket 188: 10% bucket 178: 20% bucket 181: 10% bucket 183: 10% bucket 172: 70% Getting block 186 of 211 Reserving size (4887258) for bucket 186 Calculating Z arrays for bucket 186 Entering block accumulator loop for bucket 186: bucket 173: 40% bucket 181: 40% bucket 182: 10% bucket 180: 40% bucket 177: 50% bucket 184: 10% bucket 187: 20% bucket 186: 20% bucket 171: 50% bucket 167: 60% Sorting block time: 00:00:04 Returning block of 4044760 for bucket 160 bucket 166: 80% bucket 179: 20% bucket 175: 30% Getting block 187 of 211 Reserving size (4887258) for bucket 187 Calculating Z arrays for bucket 187 Entering block accumulator loop for bucket 187: bucket 164: 70% bucket 170: 60% bucket 189: 10% Sorting block time: 00:00:03 Returning block of 2561449 for bucket 163 bucket 174: 40% bucket 175: 60% Getting block 190 of 207 Reserving size (4887258) for bucket 190 Calculating Z arrays for bucket 190 Entering block accumulator loop for bucket 190: bucket 171: 70% bucket 165: 90% bucket 167: 80% bucket 183: 40% bucket 170: 80% bucket 180: 20% bucket 172: 50% bucket 177: 30% bucket 179: 50% bucket 176: 30% bucket 185: 10% bucket 174: 60% bucket 163: 80% bucket 182: 40% bucket 169: 80% bucket 166: 70% bucket 165: 70% bucket 181: 50% bucket 168: 80% bucket 178: 60% bucket 168: 60% bucket 172: 80% bucket 184: 40% bucket 176: 60% bucket 177: 60% bucket 169: 60% bucket 185: 40% bucket 173: 70% bucket 178: 30% bucket 173: 50% bucket 183: 20% Sorting block time: 00:00:04 Returning block of 3572870 for bucket 164 bucket 181: 20% bucket 182: 20% bucket 186: 10% bucket 188: 20% Getting block 191 of 207 Reserving size (4887258) for bucket 191 Calculating Z arrays for bucket 191 Entering block accumulator loop for bucket 191: bucket 184: 20% bucket 180: 50% bucket 167: 70% bucket 187: 30% bucket 171: 60% bucket 175: 40% bucket 179: 30% bucket 187: 10% bucket 186: 30% bucket 166: 90% bucket 170: 70% bucket 164: 80% bucket 174: 50% Sorting block time: 00:00:04 Returning block of 4583426 for bucket 162 bucket 189: 20% bucket 190: 10% bucket 172: 60% bucket 183: 50% bucket 180: 30% bucket 167: 90% Getting block 188 of 211 Reserving size (4887258) for bucket 188 Calculating Z arrays for bucket 188 Entering block accumulator loop for bucket 188: bucket 170: 90% bucket 177: 40% bucket 165: 100% Sorting block of length 3457940 for bucket 165 (Using difference cover) bucket 175: 70% bucket 185: 20% bucket 168: 70% bucket 171: 80% bucket 179: 60% bucket 176: 40% Sorting block time: 00:00:04 Returning block of 3757740 for bucket 161 bucket 177: 70% bucket 163: 90% bucket 174: 70% Getting block 189 of 211 Reserving size (4887258) for bucket 189 Calculating Z arrays for bucket 189 Entering block accumulator loop for bucket 189: bucket 166: 80% bucket 181: 60% bucket 169: 90% bucket 178: 70% bucket 165: 80% bucket 184: 50% bucket 172: 90% bucket 168: 90% bucket 169: 70% bucket 182: 50% bucket 173: 80% bucket 173: 60% bucket 185: 50% bucket 178: 40% bucket 183: 30% bucket 176: 70% bucket 182: 30% bucket 181: 30% bucket 186: 20% bucket 167: 80% bucket 188: 30% bucket 184: 30% bucket 191: 10% bucket 164: 90% bucket 175: 50% bucket 179: 40% bucket 187: 20% bucket 180: 60% bucket 187: 40% bucket 171: 70% bucket 170: 80% bucket 174: 60% bucket 186: 40% bucket 166: 100% Sorting block of length 2911171 for bucket 166 (Using difference cover) bucket 172: 70% bucket 188: 10% bucket 168: 80% bucket 185: 30% bucket 177: 50% bucket 183: 60% bucket 172: 100% Sorting block of length 3515670 for bucket 172 (Using difference cover) bucket 189: 30% bucket 190: 20% bucket 180: 40% bucket 167: 100% Sorting block of length 2398107 for bucket 167 (Using difference cover) bucket 170: 100% Sorting block of length 2859903 for bucket 170 (Using difference cover) bucket 177: 80% bucket 163: 100% Sorting block of length 436729 for bucket 163 (Using difference cover) bucket 179: 70% bucket 176: 50% bucket 175: 80% bucket 189: 10% bucket 171: 90% bucket 182: 40% bucket 166: 90% bucket 181: 70% bucket 178: 80% bucket 169: 100% Sorting block of length 2166470 for bucket 169 (Using difference cover) bucket 169: 80% bucket 173: 70% Sorting block time: 00:00:00 Returning block of 436730 for bucket 163 bucket 165: 90% bucket 179: 50% bucket 184: 60% Getting block 190 of 211 Reserving size (4887258) for bucket 190 Calculating Z arrays for bucket 190 Entering block accumulator loop for bucket 190: bucket 182: 60% bucket 168: 100% Sorting block of length 3141281 for bucket 168 (Using difference cover) bucket 175: 60% bucket 178: 50% bucket 174: 80% bucket 173: 90% bucket 185: 60% bucket 167: 90% bucket 183: 40% bucket 176: 80% bucket 186: 30% bucket 184: 40% bucket 188: 40% bucket 181: 40% bucket 187: 30% bucket 170: 90% bucket 164: 100% Sorting block of length 4829548 for bucket 164 (Using difference cover) bucket 191: 20% bucket 180: 70% bucket 174: 70% bucket 171: 80% bucket 187: 50% bucket 172: 80% bucket 186: 50% bucket 188: 20% bucket 185: 40% bucket 168: 90% bucket 177: 60% Sorting block time: 00:00:03 Returning block of 3457941 for bucket 165 bucket 167: 100% Sorting block of length 1330351 for bucket 167 (Using difference cover) bucket 183: 70% Getting block 192 of 207 Reserving size (4887258) for bucket 192 Calculating Z arrays for bucket 192 Entering block accumulator loop for bucket 192: bucket 180: 50% bucket 190: 30% bucket 189: 40% bucket 177: 90% bucket 176: 60% bucket 182: 50% bucket 179: 80% bucket 189: 20% bucket 173: 80% bucket 166: 100% Sorting block of length 4796142 for bucket 166 (Using difference cover) bucket 175: 90% bucket 171: 100% Sorting block of length 4610397 for bucket 171 (Using difference cover) bucket 178: 90% bucket 181: 80% bucket 169: 90% bucket 190: 10% bucket 165: 100% Sorting block of length 3626900 for bucket 165 (Using difference cover) bucket 179: 60% bucket 175: 70% bucket 178: 60% bucket 182: 70% bucket 184: 70% bucket 183: 50% bucket 173: 100% Sorting block of length 3519590 for bucket 173 (Using difference cover) Sorting block time: 00:00:02 Returning block of 2398108 for bucket 167 bucket 185: 70% Sorting block time: 00:00:02 Returning block of 2166471 for bucket 169 bucket 174: 90% Getting block 193 of 207 Reserving size (4887258) for bucket 193 Calculating Z arrays for bucket 193 Entering block accumulator loop for bucket 193: Getting block 194 of 207 Reserving size (4887258) for bucket 194 Calculating Z arrays for bucket 194 Entering block accumulator loop for bucket 194: Sorting block time: 00:00:03 Returning block of 2859904 for bucket 170 bucket 184: 50% bucket 174: 80% bucket 172: 90% bucket 187: 60% bucket 170: 100% Sorting block of length 4715872 for bucket 170 (Using difference cover) bucket 187: 40% bucket 188: 50% Sorting block time: 00:00:04 Returning block of 2911172 for bucket 166 bucket 176: 90% Getting block 195 of 207 Reserving size (4887258) for bucket 195 Calculating Z arrays for bucket 195 Entering block accumulator loop for bucket 195: bucket 180: 80% Getting block 196 of 207 Reserving size (4887258) for bucket 196 Calculating Z arrays for bucket 196 Entering block accumulator loop for bucket 196: bucket 186: 40% bucket 191: 30% bucket 181: 50% bucket 171: 90% bucket 173: 90% bucket 185: 50% Sorting block time: 00:00:01 Returning block of 1330352 for bucket 167 bucket 188: 30% bucket 186: 60% Getting block 191 of 211 Reserving size (4887258) for bucket 191 Calculating Z arrays for bucket 191 Entering block accumulator loop for bucket 191: bucket 168: 100% Sorting block of length 4636450 for bucket 168 (Using difference cover) Sorting block time: 00:00:03 Returning block of 3515671 for bucket 172 bucket 177: 70% Getting block 197 of 207 Reserving size (4887258) for bucket 197 Calculating Z arrays for bucket 197 Entering block accumulator loop for bucket 197: bucket 183: 80% bucket 192: 10% bucket 180: 60% bucket 172: 100% Sorting block of length 4720883 for bucket 172 (Using difference cover) bucket 182: 60% bucket 176: 70% Sorting block time: 00:00:04 Returning block of 3141282 for bucket 168 bucket 190: 40% bucket 177: 100% Sorting block of length 4312061 for bucket 177 (Using difference cover) bucket 189: 30% bucket 179: 90% bucket 175: 100% Sorting block of length 4776896 for bucket 175 (Using difference cover) Getting block 198 of 207 Reserving size (4887258) for bucket 198 Calculating Z arrays for bucket 198 Entering block accumulator loop for bucket 198: bucket 190: 20% bucket 189: 50% bucket 169: 100% Sorting block of length 2193315 for bucket 169 (Using difference cover) bucket 175: 80% bucket 178: 100% Sorting block of length 606834 for bucket 178 (Using difference cover) bucket 181: 90% bucket 179: 70% bucket 178: 70% bucket 183: 60% bucket 182: 80% bucket 185: 80% bucket 184: 80% bucket 194: 10% bucket 174: 90% bucket 193: 10% bucket 187: 50% bucket 174: 100% Sorting block of length 4562151 for bucket 174 (Using difference cover) bucket 184: 60% bucket 188: 60% bucket 195: 10% Sorting block time: 00:00:01 Returning block of 606835 for bucket 178 bucket 176: 100% Sorting block of length 4627755 for bucket 176 (Using difference cover) Getting block 199 of 207 Reserving size (4887258) for bucket 199 Calculating Z arrays for bucket 199 Entering block accumulator loop for bucket 199: bucket 187: 70% bucket 186: 50% bucket 196: 10% bucket 171: 100% Sorting block of length 2549448 for bucket 171 (Using difference cover) bucket 180: 90% bucket 173: 100% Sorting block of length 2573660 for bucket 173 (Using difference cover) bucket 191: 40% bucket 185: 60% bucket 181: 60% bucket 188: 40% bucket 191: 10% bucket 186: 70% Sorting block time: 00:00:04 Returning block of 4829549 for bucket 164 bucket 177: 80% bucket 197: 10% bucket 180: 70% Getting block 192 of 211 Reserving size (4887258) for bucket 192 Calculating Z arrays for bucket 192 Entering block accumulator loop for bucket 192: bucket 182: 70% bucket 176: 80% bucket 183: 90% bucket 192: 20% bucket 190: 50% bucket 189: 40% Sorting block time: 00:00:03 Returning block of 3626901 for bucket 165 bucket 181: 100% Sorting block of length 1903355 for bucket 181 (Using difference cover) bucket 190: 30% Getting block 193 of 211 Reserving size (4887258) for bucket 193 Calculating Z arrays for bucket 193 Entering block accumulator loop for bucket 193: bucket 179: 100% Sorting block of length 5985749 for bucket 179 (Using difference cover) bucket 175: 90% bucket 187: 60% bucket 189: 60% bucket 198: 10% bucket 179: 80% bucket 183: 70% Sorting block time: 00:00:04 Returning block of 3519591 for bucket 173 bucket 178: 80% Getting block 200 of 207 Reserving size (4887258) for bucket 200 Calculating Z arrays for bucket 200 Entering block accumulator loop for bucket 200: bucket 186: 60% Sorting block time: 00:00:02 Returning block of 2193316 for bucket 169 bucket 182: 90% bucket 184: 70% Getting block 194 of 211 Reserving size (4887258) for bucket 194 Calculating Z arrays for bucket 194 Entering block accumulator loop for bucket 194: bucket 194: 20% bucket 174: 100% Sorting block of length 3860240 for bucket 174 (Using difference cover) bucket 185: 90% bucket 184: 90% bucket 193: 20% bucket 188: 70% Sorting block time: 00:00:04 Returning block of 4610398 for bucket 171 bucket 182: 80% bucket 195: 20% bucket 187: 80% bucket 196: 20% bucket 180: 100% Sorting block of length 3214777 for bucket 180 (Using difference cover) bucket 199: 10% bucket 191: 50% bucket 192: 10% bucket 176: 90% Getting block 201 of 207 Reserving size (4887258) for bucket 201 Calculating Z arrays for bucket 201 Entering block accumulator loop for bucket 201: bucket 185: 70% bucket 191: 20% bucket 181: 70% bucket 193: 10% Sorting block time: 00:00:05 Returning block of 4796143 for bucket 166 bucket 188: 50% Sorting block time: 00:00:04 Returning block of 4715873 for bucket 170 bucket 186: 80% Getting block 195 of 211 Reserving size (4887258) for bucket 195 Calculating Z arrays for bucket 195 Entering block accumulator loop for bucket 195: Sorting block time: 00:00:01 Returning block of 1903356 for bucket 181 Getting block 196 of 211 Reserving size (4887258) for bucket 196 Calculating Z arrays for bucket 196 Entering block accumulator loop for bucket 196: Getting block 202 of 207 Reserving size (4887258) for bucket 202 Calculating Z arrays for bucket 202 Entering block accumulator loop for bucket 202: bucket 180: 80% bucket 197: 20% bucket 177: 90% bucket 189: 50% Sorting block time: 00:00:02 Returning block of 2549449 for bucket 171 bucket 190: 60% bucket 183: 80% bucket 190: 40% Getting block 197 of 211 Reserving size (4887258) for bucket 197 Calculating Z arrays for bucket 197 Entering block accumulator loop for bucket 197: bucket 183: 100% Sorting block of length 3318705 for bucket 183 (Using difference cover) bucket 175: 100% Sorting block of length 2382046 for bucket 175 (Using difference cover) bucket 187: 70% bucket 189: 70% bucket 192: 30% bucket 179: 90% bucket 198: 20% bucket 186: 70% bucket 178: 90% bucket 193: 30% bucket 184: 80% bucket 200: 10% Sorting block time: 00:00:04 Returning block of 4776897 for bucket 175 bucket 182: 100% Sorting block of length 3441389 for bucket 182 (Using difference cover) bucket 194: 10% Sorting block time: 00:00:05 Returning block of 4636451 for bucket 168 bucket 194: 30% bucket 187: 90% bucket 192: 20% Getting block 203 of 207 Reserving size (4887258) for bucket 203 Calculating Z arrays for bucket 203 Entering block accumulator loop for bucket 203: bucket 182: 90% bucket 185: 100% Sorting block of length 2948528 for bucket 185 (Using difference cover) bucket 188: 80% Getting block 198 of 211 Reserving size (4887258) for bucket 198 Calculating Z arrays for bucket 198 Entering block accumulator loop for bucket 198: bucket 184: 100% Sorting block of length 3350058 for bucket 184 (Using difference cover) bucket 195: 30% bucket 196: 30% bucket 181: 80% bucket 176: 100% Sorting block of length 2872450 for bucket 176 (Using difference cover) bucket 201: 10% bucket 193: 20% bucket 191: 60% bucket 199: 20% bucket 185: 80% bucket 191: 30% Sorting block time: 00:00:05 Returning block of 4312062 for bucket 177 bucket 186: 90% bucket 188: 60% bucket 195: 10% bucket 196: 10% Getting block 204 of 207 Reserving size (4887258) for bucket 204 Calculating Z arrays for bucket 204 Entering block accumulator loop for bucket 204: bucket 190: 50% bucket 180: 90% bucket 197: 10% bucket 189: 60% bucket 197: 30% bucket 202: 10% bucket 183: 90% bucket 190: 70% Sorting block time: 00:00:05 Returning block of 4720884 for bucket 172 Sorting block time: 00:00:05 Returning block of 4562152 for bucket 174 bucket 177: 100% Sorting block of length 4368363 for bucket 177 (Using difference cover) Getting block 199 of 211 Reserving size (4887258) for bucket 199 Calculating Z arrays for bucket 199 Entering block accumulator loop for bucket 199: bucket 187: 80% bucket 189: 80% Getting block 205 of 207 Reserving size (4887258) for bucket 205 Calculating Z arrays for bucket 205 Entering block accumulator loop for bucket 205: bucket 179: 100% Sorting block of length 4050277 for bucket 179 (Using difference cover) bucket 192: 40% Sorting block time: 00:00:05 Returning block of 2573661 for bucket 173 bucket 186: 80% bucket 184: 90% bucket 198: 30% Sorting block time: 00:00:05 Returning block of 4627756 for bucket 176 Sorting block time: 00:00:03 Returning block of 2382047 for bucket 175 Getting block 200 of 211 Reserving size (4887258) for bucket 200 Calculating Z arrays for bucket 200 Entering block accumulator loop for bucket 200: bucket 193: 40% bucket 178: 100% Sorting block of length 2129579 for bucket 178 (Using difference cover) bucket 200: 20% bucket 192: 30% Getting block 201 of 211 Reserving size (4887258) for bucket 201 Calculating Z arrays for bucket 201 Entering block accumulator loop for bucket 201: Getting block 206 of 207 Reserving size (4887258) for bucket 206 Calculating Z arrays for bucket 206 Entering block accumulator loop for bucket 206: bucket 182: 100% Sorting block of length 2932900 for bucket 182 (Using difference cover) bucket 198: 10% bucket 194: 40% bucket 189: 70% bucket 203: 10% bucket 194: 20% Sorting block time: 00:00:04 Returning block of 3214778 for bucket 180 bucket 187: 100% Sorting block of length 4728439 for bucket 187 (Using difference cover) bucket 188: 90% Getting block 207 of 207 Reserving size (4887258) for bucket 207 Calculating Z arrays for bucket 207 Entering block accumulator loop for bucket 207: bucket 190: 60% bucket 193: 30% bucket 196: 40% bucket 204: 10% bucket 195: 40% bucket 191: 40% bucket 191: 70% Sorting block time: 00:00:04 Returning block of 3860241 for bucket 174 bucket 181: 90% bucket 185: 90% bucket 201: 20% Getting block 202 of 211 Reserving size (4887258) for bucket 202 Calculating Z arrays for bucket 202 Entering block accumulator loop for bucket 202: bucket 188: 70% bucket 186: 100% Sorting block of length 3337301 for bucket 186 (Using difference cover) bucket 196: 20% Sorting block time: 00:00:03 Returning block of 3441390 for bucket 182 bucket 199: 30% bucket 197: 20% bucket 195: 20% bucket 180: 100% Sorting block of length 1763088 for bucket 180 (Using difference cover) bucket 183: 100% Sorting block of length 3182194 for bucket 183 (Using difference cover) bucket 197: 40% Sorting block time: 00:00:04 Returning block of 3318706 for bucket 183 bucket 190: 80% Sorting block time: 00:00:05 Returning block of 5985750 for bucket 179 bucket 202: 20% bucket 199: 10% Sorting block time: 00:00:03 Returning block of 2948529 for bucket 185 bucket 205: 10% bucket 184: 100% Sorting block of length 2646673 for bucket 184 (Using difference cover) bucket 189: 90% bucket 186: 90% bucket 207: 10% bucket 192: 50% bucket 189: 80% bucket 187: 90% bucket 200: 10% bucket 198: 20% bucket 191: 80% Sorting block time: 00:00:03 Returning block of 2872451 for bucket 176 bucket 192: 40% bucket 206: 10% bucket 188: 100% Sorting block of length 3209137 for bucket 188 (Using difference cover) bucket 198: 40% bucket 201: 10% bucket 200: 30% Getting block 203 of 211 Reserving size (4887258) for bucket 203 Calculating Z arrays for bucket 203 Entering block accumulator loop for bucket 203: bucket 193: 50% bucket 194: 50% Sorting block time: 00:00:02 Returning block of 2129580 for bucket 178 bucket 194: 30% bucket 181: 100% Sorting block of length 3735273 for bucket 181 (Using difference cover) bucket 190: 70% Getting block 204 of 211 Reserving size (4887258) for bucket 204 Calculating Z arrays for bucket 204 Entering block accumulator loop for bucket 204: bucket 193: 40% Sorting block time: 00:00:04 Returning block of 3350059 for bucket 184 bucket 203: 20% bucket 191: 50% bucket 196: 50% bucket 197: 30% bucket 185: 100% Sorting block of length 3088484 for bucket 185 (Using difference cover) bucket 204: 20% bucket 195: 30% bucket 202: 10% bucket 195: 50% bucket 196: 30% bucket 201: 30% bucket 188: 80% bucket 198: 30% bucket 199: 40% bucket 207: 20% Sorting block time: 00:00:01 Returning block of 1763089 for bucket 180 bucket 190: 90% Getting block 205 of 211 Reserving size (4887258) for bucket 205 Calculating Z arrays for bucket 205 Entering block accumulator loop for bucket 205: bucket 202: 30% bucket 197: 50% bucket 199: 20% bucket 189: 90% Sorting block time: 00:00:04 Returning block of 4050278 for bucket 179 bucket 186: 100% Sorting block of length 4551676 for bucket 186 (Using difference cover) Sorting block time: 00:00:03 Returning block of 2932901 for bucket 182 bucket 205: 20% bucket 200: 20% bucket 187: 100% Sorting block of length 4479134 for bucket 187 (Using difference cover) bucket 192: 50% bucket 194: 60% bucket 189: 100% Sorting block of length 4561318 for bucket 189 (Using difference cover) Getting block 206 of 211 Reserving size (4887258) for bucket 206 Calculating Z arrays for bucket 206 Entering block accumulator loop for bucket 206: bucket 192: 60% bucket 203: 30% bucket 191: 90% Getting block 207 of 211 Reserving size (4887258) for bucket 207 Calculating Z arrays for bucket 207 Entering block accumulator loop for bucket 207: bucket 206: 20% bucket 202: 20% bucket 201: 20% bucket 203: 10% bucket 204: 10% bucket 207: 30% bucket 193: 50% bucket 198: 50% Sorting block time: 00:00:02 Returning block of 2646674 for bucket 184 bucket 200: 40% bucket 193: 60% Getting block 208 of 211 Reserving size (4887258) for bucket 208 Calculating Z arrays for bucket 208 Entering block accumulator loop for bucket 208: bucket 190: 80% bucket 194: 40% Sorting block time: 00:00:05 Returning block of 4368364 for bucket 177 bucket 197: 40% bucket 191: 60% bucket 190: 100% Sorting block of length 3249643 for bucket 190 (Using difference cover) Sorting block time: 00:00:03 Returning block of 3182195 for bucket 183 bucket 196: 40% Getting block 209 of 211 Reserving size (4887258) for bucket 209 Calculating Z arrays for bucket 209 Entering block accumulator loop for bucket 209: bucket 198: 40% bucket 196: 60% bucket 195: 40% bucket 204: 30% Getting block 210 of 211 Reserving size (4887258) for bucket 210 Calculating Z arrays for bucket 210 Entering block accumulator loop for bucket 210: bucket 195: 60% bucket 188: 90% bucket 199: 50% Sorting block time: 00:00:04 Returning block of 3337302 for bucket 186 bucket 207: 10% bucket 201: 40% bucket 205: 10% bucket 207: 40% bucket 202: 40% Sorting block time: 00:00:03 Returning block of 3209138 for bucket 188 bucket 192: 60% bucket 200: 30% bucket 197: 60% bucket 199: 30% bucket 189: 100% Sorting block of length 4858931 for bucket 189 (Using difference cover) bucket 203: 40% Sorting block time: 00:00:02 Returning block of 3088485 for bucket 185 bucket 203: 20% bucket 194: 70% Getting block 211 of 211 Reserving size (4887258) for bucket 211 Calculating Z arrays for bucket 211 Entering block accumulator loop for bucket 211: Sorting block time: 00:00:05 Returning block of 4728440 for bucket 187 bucket 204: 20% bucket 200: 50% bucket 206: 10% bucket 191: 100% Sorting block of length 2881949 for bucket 191 (Using difference cover) bucket 205: 30% bucket 202: 30% bucket 201: 30% bucket 197: 50% bucket 192: 70% bucket 191: 70% bucket 206: 30% bucket 193: 60% bucket 207: 20% bucket 190: 90% bucket 208: 10% bucket 205: 20% bucket 198: 60% Sorting block time: 00:00:02 Returning block of 4479135 for bucket 187 bucket 207: 50% bucket 193: 70% bucket 194: 50% bucket 210: 10% bucket 196: 50% bucket 209: 10% bucket 198: 50% bucket 196: 70% bucket 204: 40% Sorting block time: 00:00:04 Returning block of 3735274 for bucket 181 bucket 195: 50% bucket 197: 70% bucket 211: 10% bucket 194: 80% bucket 201: 50% bucket 188: 100% Sorting block of length 3777462 for bucket 188 (Using difference cover) bucket 203: 30% bucket 195: 70% bucket 204: 30% bucket 199: 60% bucket 199: 40% bucket 202: 50% bucket 207: 60% bucket 206: 20% bucket 200: 40% bucket 208: 20% bucket 192: 70% bucket 206: 40% bucket 203: 50% Sorting block time: 00:00:03 Returning block of 4561319 for bucket 189 bucket 205: 30% bucket 207: 30% Sorting block time: 00:00:03 Returning block of 4551677 for bucket 186 bucket 211: 20% bucket 193: 70% bucket 197: 60% bucket 200: 60% bucket 202: 40% bucket 205: 40% bucket 201: 40% Sorting block time: 00:00:03 Returning block of 3249644 for bucket 190 bucket 190: 100% Sorting block of length 3939651 for bucket 190 (Using difference cover) bucket 210: 20% bucket 193: 80% bucket 204: 50% bucket 206: 30% bucket 203: 40% bucket 191: 80% bucket 201: 60% bucket 207: 70% Sorting block time: 00:00:02 Returning block of 2881950 for bucket 191 bucket 192: 80% bucket 196: 80% bucket 199: 50% bucket 196: 60% bucket 209: 20% bucket 198: 60% bucket 198: 70% Sorting block time: 00:00:03 Returning block of 4858932 for bucket 189 bucket 208: 30% bucket 194: 60% bucket 205: 40% bucket 194: 90% bucket 206: 50% bucket 199: 70% bucket 211: 30% bucket 195: 80% bucket 195: 60% bucket 193: 80% bucket 204: 40% bucket 202: 60% bucket 197: 80% bucket 197: 70% bucket 200: 50% bucket 207: 40% bucket 192: 80% bucket 205: 50% bucket 207: 80% bucket 203: 60% bucket 210: 30% bucket 203: 50% bucket 206: 40% bucket 201: 50% bucket 208: 40% bucket 201: 70% bucket 202: 50% Sorting block time: 00:00:02 Returning block of 3777463 for bucket 188 bucket 196: 90% bucket 205: 50% bucket 191: 90% bucket 194: 100% Sorting block of length 3738767 for bucket 194 (Using difference cover) bucket 200: 70% bucket 199: 60% bucket 211: 40% bucket 198: 80% bucket 198: 70% bucket 206: 60% bucket 193: 90% Sorting block time: 00:00:01 Returning block of 3939652 for bucket 190 bucket 207: 90% bucket 196: 70% bucket 197: 80% bucket 204: 60% bucket 193: 90% bucket 209: 30% bucket 195: 70% bucket 210: 40% bucket 199: 80% bucket 192: 90% bucket 207: 50% bucket 203: 70% bucket 203: 60% bucket 205: 60% bucket 195: 90% bucket 208: 50% bucket 194: 70% bucket 204: 50% bucket 201: 80% bucket 197: 90% bucket 211: 50% bucket 206: 50% bucket 207: 100% Sorting block of length 479399 for bucket 207 (Using difference cover) bucket 205: 60% bucket 196: 100% Sorting block of length 3822739 for bucket 196 (Using difference cover) bucket 200: 80% bucket 202: 70% bucket 201: 60% bucket 200: 60% bucket 198: 80% bucket 192: 90% bucket 191: 100% Sorting block of length 4768349 for bucket 191 (Using difference cover) bucket 193: 100% Sorting block of length 287857 for bucket 193 (Using difference cover) bucket 198: 90% bucket 195: 80% bucket 206: 70% bucket 209: 40% bucket 199: 70% bucket 197: 90% bucket 202: 60% bucket 210: 50% bucket 204: 70% bucket 208: 60% bucket 207: 60% bucket 203: 80% Sorting block time: 00:00:01 Returning block of 287858 for bucket 193 bucket 203: 70% bucket 196: 80% bucket 205: 70% bucket 204: 60% bucket 199: 90% bucket 201: 90% bucket 211: 60% bucket 193: 100% Sorting block of length 3164170 for bucket 193 (Using difference cover) bucket 205: 70% bucket 194: 80% bucket 206: 60% Sorting block time: 00:00:02 Returning block of 3738768 for bucket 194 bucket 200: 70% bucket 197: 100% Sorting block of length 4567861 for bucket 197 (Using difference cover) bucket 206: 80% bucket 209: 50% bucket 192: 100% Sorting block of length 4168115 for bucket 192 (Using difference cover) bucket 195: 100% Sorting block of length 4265895 for bucket 195 (Using difference cover) bucket 198: 90% bucket 197: 100% Sorting block of length 3107333 for bucket 197 (Using difference cover) bucket 202: 80% bucket 202: 70% bucket 208: 70% bucket 198: 100% Sorting block of length 3964384 for bucket 198 (Using difference cover) bucket 207: 70% bucket 201: 70% bucket 200: 90% bucket 210: 60% bucket 203: 80% bucket 204: 80% Sorting block time: 00:00:02 Returning block of 479400 for bucket 207 bucket 192: 100% Sorting block of length 418313 for bucket 192 (Using difference cover) bucket 203: 90% bucket 195: 90% bucket 199: 80% bucket 205: 80% bucket 205: 80% Sorting block time: 00:00:02 Returning block of 3822740 for bucket 196 bucket 201: 100% Sorting block of length 3918477 for bucket 201 (Using difference cover) bucket 196: 90% Sorting block time: 00:00:00 Returning block of 418314 for bucket 192 bucket 211: 70% bucket 208: 80% bucket 209: 60% bucket 207: 80% bucket 206: 90% bucket 198: 100% Sorting block of length 4561629 for bucket 198 (Using difference cover) bucket 206: 70% bucket 210: 70% bucket 203: 90% bucket 201: 80% bucket 204: 90% bucket 194: 90% bucket 203: 100% Sorting block of length 4197720 for bucket 203 (Using difference cover) bucket 202: 80% bucket 204: 70% bucket 202: 90% bucket 200: 100% Sorting block of length 4679410 for bucket 200 (Using difference cover) bucket 199: 100% Sorting block of length 3561316 for bucket 199 (Using difference cover) bucket 205: 90% bucket 199: 90% bucket 211: 80% bucket 195: 100% Sorting block of length 4510929 for bucket 195 (Using difference cover) bucket 205: 90% bucket 200: 80% Sorting block time: 00:00:02 Returning block of 3107334 for bucket 197 bucket 196: 100% Sorting block of length 4470143 for bucket 196 (Using difference cover) Sorting block time: 00:00:03 Returning block of 4768350 for bucket 191 bucket 207: 90% bucket 209: 70% Sorting block time: 00:00:02 Returning block of 3164171 for bucket 193 bucket 208: 90% bucket 206: 100% Sorting block of length 9622716 for bucket 206 (Using difference cover) bucket 211: 90% bucket 210: 80% bucket 203: 100% Sorting block of length 2983833 for bucket 203 (Using difference cover) bucket 194: 100% Sorting block of length 8654637 for bucket 194 (Using difference cover) bucket 202: 90% bucket 201: 90% bucket 204: 100% Sorting block of length 1121720 for bucket 204 (Using difference cover) bucket 206: 80% bucket 204: 80% bucket 205: 100% Sorting block of length 4254285 for bucket 205 (Using difference cover) bucket 205: 100% Sorting block of length 215108 for bucket 205 (Using difference cover) Sorting block time: 00:00:03 Returning block of 4567862 for bucket 197 bucket 199: 100% Sorting block of length 3341813 for bucket 199 (Using difference cover) bucket 202: 100% Sorting block of length 4524193 for bucket 202 (Using difference cover) Sorting block time: 00:00:02 Returning block of 3964385 for bucket 198 Sorting block time: 00:00:03 Returning block of 4168116 for bucket 192 bucket 200: 90% bucket 211: 100% Sorting block of length 1546093 for bucket 211 (Using difference cover) bucket 207: 100% Sorting block of length 1367802 for bucket 207 (Using difference cover) Sorting block time: 00:00:00 Returning block of 215109 for bucket 205 bucket 208: 100% Sorting block of length 5666067 for bucket 208 (Using difference cover) bucket 209: 80% Sorting block time: 00:00:03 Returning block of 4265896 for bucket 195 bucket 210: 90% bucket 202: 100% Sorting block of length 4549864 for bucket 202 (Using difference cover) bucket 201: 100% Sorting block of length 4167083 for bucket 201 (Using difference cover) bucket 206: 90% Sorting block time: 00:00:03 Returning block of 3918478 for bucket 201 bucket 204: 90% Sorting block time: 00:00:01 Returning block of 1546094 for bucket 211 Sorting block time: 00:00:01 Returning block of 1367803 for bucket 207 Sorting block time: 00:00:02 Returning block of 2983834 for bucket 203 Sorting block time: 00:00:01 Returning block of 1121721 for bucket 204 bucket 200: 100% Sorting block of length 4546570 for bucket 200 (Using difference cover) Sorting block time: 00:00:02 Returning block of 3561317 for bucket 199 bucket 209: 90% Sorting block time: 00:00:03 Returning block of 4561630 for bucket 198 bucket 210: 100% Sorting block of length 4561919 for bucket 210 (Using difference cover) Sorting block time: 00:00:02 Returning block of 4510930 for bucket 195 Sorting block time: 00:00:02 Returning block of 4679411 for bucket 200 bucket 206: 100% Sorting block of length 2667843 for bucket 206 (Using difference cover) Sorting block time: 00:00:02 Returning block of 4197721 for bucket 203 bucket 204: 100% Sorting block of length 4502215 for bucket 204 (Using difference cover) Sorting block time: 00:00:03 Returning block of 4470144 for bucket 196 Sorting block time: 00:00:02 Returning block of 3341814 for bucket 199 bucket 209: 100% Sorting block of length 1282353 for bucket 209 (Using difference cover) Sorting block time: 00:00:02 Returning block of 4254286 for bucket 205 Sorting block time: 00:00:02 Returning block of 4524194 for bucket 202 Sorting block time: 00:00:02 Returning block of 4549865 for bucket 202 Sorting block time: 00:00:02 Returning block of 4167084 for bucket 201 Sorting block time: 00:00:00 Returning block of 1282354 for bucket 209 Sorting block time: 00:00:03 Returning block of 5666068 for bucket 208 Sorting block time: 00:00:02 Returning block of 2667844 for bucket 206 Sorting block time: 00:00:02 Returning block of 4546571 for bucket 200 Sorting block time: 00:00:02 Returning block of 4561920 for bucket 210 Sorting block time: 00:00:02 Returning block of 4502216 for bucket 204 Sorting block time: 00:00:04 Returning block of 8654638 for bucket 194 Sorting block time: 00:00:07 Returning block of 9622717 for bucket 206 Exited Ebwt loop fchr[A]: 0 fchr[C]: 218041673 fchr[G]: 218041673 fchr[T]: 365007388 fchr[$]: 729830598 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 247662946 bytes to primary EBWT file: BS_CT.rev.1.bt2 Wrote 182457656 bytes to secondary EBWT file: BS_CT.rev.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 729830598 bwtLen: 729830599 sz: 182457650 bwtSz: 182457650 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 45614413 offsSz: 182457652 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3801202 numLines: 3801202 ebwtTotLen: 243276928 ebwtTotSz: 243276928 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:03:39 Exited Ebwt loop fchr[A]: 0 fchr[C]: 365007388 fchr[G]: 512126086 fchr[T]: 512126086 fchr[$]: 729830598 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 247662946 bytes to primary EBWT file: BS_GA.rev.1.bt2 Wrote 182457656 bytes to secondary EBWT file: BS_GA.rev.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 729830598 bwtLen: 729830599 sz: 182457650 bwtSz: 182457650 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 45614413 offsSz: 182457652 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3801202 numLines: 3801202 ebwtTotLen: 243276928 ebwtTotSz: 243276928 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:03:43 Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH01_06_S1_L001_R1_001_val_1.fq.gz to CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH01_06_S1_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH01_06_S1_L001_R2_001_val_2.fq.gz to CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH01_06_S1_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2392:1384_1:N:0:NTCACG/1 99 contig_5081_pilon__uns_CT_converted 19643 42 22M = 19643 -22 GTAGTTGGTTTTGAAGATATGG JJFJJJJJJJJJJJJJFJFJJJ AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:22 YS:i:0 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2392:1384_2:N:0:NTCACG/2 147 contig_5081_pilon__uns_CT_converted 19643 42 22M = 19643 -22 GTAGTTGGTTTTGAAGATATGG JJJJJJJJJJJ7JJJJJJJJJJ AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:22 YS:i:0 YT:Z:CP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2392:1384_1:N:0:NTCACG/1 83 contig_2629_pilon___frag_1__uns_GA_converted 16347 1 22M = 16347 -22 CCATATCTTCAAAACCAACTAC JJJFJFJJJJJJJJJJJJJFJJ AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:22 YS:i:0 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2392:1384_2:N:0:NTCACG/2 163 contig_2629_pilon___frag_1__uns_GA_converted 16347 1 22M = 16347 -22 CCATATCTTCAAAACCAACTAC JJJJJJJJJJ7JJJJJJJJJJJ AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:22 YS:i:0 YT:Z:CP >>> Writing bisulfite mapping results to CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 28126 (70.31%) aligned concordantly 0 times 4988 (12.47%) aligned concordantly exactly 1 time 6886 (17.21%) aligned concordantly >1 times 29.68% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 28200 (70.50%) aligned concordantly 0 times 4875 (12.19%) aligned concordantly exactly 1 time 6925 (17.31%) aligned concordantly >1 times 29.50% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11805 Mapping efficiency: 29.5% Sequence pairs with no alignments under any condition: 23284 Sequence pairs did not map uniquely: 4911 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5871 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5934 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 353081 Total methylated C's in CpG context: 45441 Total methylated C's in CHG context: 1887 Total methylated C's in CHH context: 29260 Total methylated C's in Unknown context: 304 Total unmethylated C's in CpG context: 14595 Total unmethylated C's in CHG context: 70652 Total unmethylated C's in CHH context: 191246 Total unmethylated C's in Unknown context: 718 C methylated in CpG context: 75.7% C methylated in CHG context: 2.6% C methylated in CHH context: 13.3% C methylated in unknown context (CN or CHN): 29.7% Bismark completed in 0d 0h 1m 1s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH01_14_S2_L001_R1_001_val_1.fq.gz to CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH01_14_S2_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH01_14_S2_L001_R2_001_val_2.fq.gz to CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH01_14_S2_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:1834:1367_1:N:0:NGATGT/1 77 * 0 0 * * 0 0 GAGAGGGATGTGATAATGTTTATGATGAGTATTGTATATTAATTTTATTGTTTATATTAATATTTATTTTTTATAGTTTTT JJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:1834:1367_2:N:0:NGATGT/2 141 * 0 0 * * 0 0 CTAACAATCACAAATCTAACATATCAAAAAACCATTCATCAAAAACTCAACAATATAAAATATAAAAAACTATAAAAAAT JJFJJJFJFJJJJJ>> Writing bisulfite mapping results to CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 26934 (67.33%) aligned concordantly 0 times 4538 (11.35%) aligned concordantly exactly 1 time 8528 (21.32%) aligned concordantly >1 times 32.66% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 26592 (66.48%) aligned concordantly 0 times 4856 (12.14%) aligned concordantly exactly 1 time 8552 (21.38%) aligned concordantly >1 times 33.52% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11548 Mapping efficiency: 28.9% Sequence pairs with no alignments under any condition: 22152 Sequence pairs did not map uniquely: 6300 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5688 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5860 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 306759 Total methylated C's in CpG context: 32725 Total methylated C's in CHG context: 1594 Total methylated C's in CHH context: 35464 Total methylated C's in Unknown context: 457 Total unmethylated C's in CpG context: 14243 Total unmethylated C's in CHG context: 56303 Total unmethylated C's in CHH context: 166430 Total unmethylated C's in Unknown context: 908 C methylated in CpG context: 69.7% C methylated in CHG context: 2.8% C methylated in CHH context: 17.6% C methylated in unknown context (CN or CHN): 33.5% Bismark completed in 0d 0h 1m 1s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH01_22_S3_L001_R1_001_val_1.fq.gz to CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH01_22_S3_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH01_22_S3_L001_R2_001_val_2.fq.gz to CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH01_22_S3_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:4807:1384_1:N:0:NTAGGC/1 77 * 0 0 * * 0 0 GTGTGATGGTGATGTTTGAGTGGTAGTTGTAGTTTGAAATATTATATGGGAAGGTT JJJJJJJJJJJFJJJJJJJJJJJFFJJJJJJJJFJJFJJJJJJJJJJJJJ7FJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:4807:1384_2:N:0:NTAGGC/2 141 * 0 0 * * 0 0 AACCTTCCCATATAATATTTCAAACTACAACTACCACTCAAACATCACCATCACAC JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:4807:1384_1:N:0:NTAGGC/1 83 PGA_scaffold29__63_contigs__length_7458616_GA_converted 435067 42 56M = 435067 -56 AACCTTCCCATATAATATTTCAAACTACAACTACCACTCAAACATCACCATCACAC JJJJF7JJJJJJJJJJJJJFJJFJJJJJJJJFFJJJJJJJJJJJFJJJJJJJJJJJ AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:56 YS:i:0 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:4807:1384_2:N:0:NTAGGC/2 163 PGA_scaffold29__63_contigs__length_7458616_GA_converted 435067 42 56M = 435067 -56 AACCTTCCCATATAATATTTCAAACTACAACTACCACTCAAACATCACCATCACAC JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:56 YS:i:0 YT:Z:CP >>> Writing bisulfite mapping results to CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 27634 (69.08%) aligned concordantly 0 times 4940 (12.35%) aligned concordantly exactly 1 time 7426 (18.57%) aligned concordantly >1 times 30.91% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 27554 (68.89%) aligned concordantly 0 times 5010 (12.53%) aligned concordantly exactly 1 time 7436 (18.59%) aligned concordantly >1 times 31.11% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11862 Mapping efficiency: 29.7% Sequence pairs with no alignments under any condition: 22771 Sequence pairs did not map uniquely: 5367 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5893 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5969 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 350298 Total methylated C's in CpG context: 36949 Total methylated C's in CHG context: 1595 Total methylated C's in CHH context: 32057 Total methylated C's in Unknown context: 383 Total unmethylated C's in CpG context: 16470 Total unmethylated C's in CHG context: 67571 Total unmethylated C's in CHH context: 195656 Total unmethylated C's in Unknown context: 832 C methylated in CpG context: 69.2% C methylated in CHG context: 2.3% C methylated in CHH context: 14.1% C methylated in unknown context (CN or CHN): 31.5% Bismark completed in 0d 0h 0m 58s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH01_38_S4_L001_R1_001_val_1.fq.gz to CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH01_38_S4_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH01_38_S4_L001_R2_001_val_2.fq.gz to CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH01_38_S4_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:3772:1384_1:N:0:NGACCA/1 77 * 0 0 * * 0 0 TTTTAAATTTAATGAATTTTATATAAAAGAGTATAAATGAATAAAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:3772:1384_2:N:0:NGACCA/2 141 * 0 0 * * 0 0 TTTTATTCATTTATACTCTTTTATATAAAATTCATTAAATTTAAAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:3772:1384_1:N:0:NGACCA/1 77 * 0 0 * * 0 0 TTTTAAATTTAATGAATTTTATATAAAAGAGTATAAATGAATAAAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:3772:1384_2:N:0:NGACCA/2 141 * 0 0 * * 0 0 TTTTATTCATTTATACTCTTTTATATAAAATTCATTAAATTTAAAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP >>> Writing bisulfite mapping results to CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 27348 (68.37%) aligned concordantly 0 times 4644 (11.61%) aligned concordantly exactly 1 time 8008 (20.02%) aligned concordantly >1 times 31.63% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 27254 (68.14%) aligned concordantly 0 times 4733 (11.83%) aligned concordantly exactly 1 time 8013 (20.03%) aligned concordantly >1 times 31.86% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11572 Mapping efficiency: 28.9% Sequence pairs with no alignments under any condition: 22692 Sequence pairs did not map uniquely: 5736 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5727 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5845 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 309729 Total methylated C's in CpG context: 31379 Total methylated C's in CHG context: 1708 Total methylated C's in CHH context: 39483 Total methylated C's in Unknown context: 486 Total unmethylated C's in CpG context: 13283 Total unmethylated C's in CHG context: 57744 Total unmethylated C's in CHH context: 166132 Total unmethylated C's in Unknown context: 868 C methylated in CpG context: 70.3% C methylated in CHG context: 2.9% C methylated in CHH context: 19.2% C methylated in unknown context (CN or CHN): 35.9% Bismark completed in 0d 0h 1m 1s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH03_04_S5_L001_R1_001_val_1.fq.gz to CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH03_04_S5_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH03_04_S5_L001_R2_001_val_2.fq.gz to CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH03_04_S5_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2676:1384_1:N:0:NCAGTG/1 99 PGA_scaffold44__101_contigs__length_25971783_CT_converted 8616919 0 50M = 8616919 -50 TTAGTTTTTGTGTTATGAGTGAATTTTATTAGTAATTTTGTGTGTAATTA JJAJAJJJJJJJJJJJJFJJJAAFJJJJJJJ>> Writing bisulfite mapping results to CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 25008 (62.52%) aligned concordantly 0 times 2899 (7.25%) aligned concordantly exactly 1 time 12093 (30.23%) aligned concordantly >1 times 37.48% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 24925 (62.31%) aligned concordantly 0 times 3020 (7.55%) aligned concordantly exactly 1 time 12055 (30.14%) aligned concordantly >1 times 37.69% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 8475 Mapping efficiency: 21.2% Sequence pairs with no alignments under any condition: 22031 Sequence pairs did not map uniquely: 9494 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 4235 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 4240 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 200080 Total methylated C's in CpG context: 3062 Total methylated C's in CHG context: 1268 Total methylated C's in CHH context: 67834 Total methylated C's in Unknown context: 659 Total unmethylated C's in CpG context: 19389 Total unmethylated C's in CHG context: 25947 Total unmethylated C's in CHH context: 82580 Total unmethylated C's in Unknown context: 705 C methylated in CpG context: 13.6% C methylated in CHG context: 4.7% C methylated in CHH context: 45.1% C methylated in unknown context (CN or CHN): 48.3% Bismark completed in 0d 0h 1m 9s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH03_15_S6_L001_R1_001_val_1.fq.gz to CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH03_15_S6_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH03_15_S6_L001_R2_001_val_2.fq.gz to CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH03_15_S6_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2280:1367_1:N:0:NCCAAT/1 77 * 0 0 * * 0 0 TGTTAATGGTTATGGAAGTTATTTATTTTTATTAAAAAATAATTTAATTTTTATTGTTTGTTTGGTTATGATGGGTTGAT JJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2280:1367_2:N:0:NCCAAT/2 141 * 0 0 * * 0 0 TAAAAATTTTAATCAACCCATCATAACCAAACAAACAATAAAAATTAAATTATTTTTTAATAAAAATAAATAACTTCCAT JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFFJJJ YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2280:1367_1:N:0:NCCAAT/1 77 * 0 0 * * 0 0 TGTTAATGGTTATGGAAGTTATTTATTTTTATTAAAAAATAATTTAATTTTTATTGTTTGTTTGGTTATGATGGGTTGAT JJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2280:1367_2:N:0:NCCAAT/2 141 * 0 0 * * 0 0 TAAAAATTTTAATCAACCCATCATAACCAAACAAACAATAAAAATTAAATTATTTTTTAATAAAAATAAATAACTTCCAT JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFFJJJ YT:Z:UP >>> Writing bisulfite mapping results to CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 29133 (72.83%) aligned concordantly 0 times 3233 (8.08%) aligned concordantly exactly 1 time 7634 (19.09%) aligned concordantly >1 times 27.17% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 29083 (72.71%) aligned concordantly 0 times 3213 (8.03%) aligned concordantly exactly 1 time 7704 (19.26%) aligned concordantly >1 times 27.29% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 7978 Mapping efficiency: 19.9% Sequence pairs with no alignments under any condition: 25966 Sequence pairs did not map uniquely: 6056 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 3975 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 4003 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 203797 Total methylated C's in CpG context: 5548 Total methylated C's in CHG context: 1087 Total methylated C's in CHH context: 39079 Total methylated C's in Unknown context: 348 Total unmethylated C's in CpG context: 21216 Total unmethylated C's in CHG context: 32439 Total unmethylated C's in CHH context: 104428 Total unmethylated C's in Unknown context: 605 C methylated in CpG context: 20.7% C methylated in CHG context: 3.2% C methylated in CHH context: 27.2% C methylated in unknown context (CN or CHN): 36.5% Bismark completed in 0d 0h 0m 56s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH03_33_S7_L001_R1_001_val_1.fq.gz to CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH03_33_S7_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH03_33_S7_L001_R2_001_val_2.fq.gz to CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH03_33_S7_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2605:1367_1:N:0:NAGATC/1 77 * 0 0 * * 0 0 ATATAATTTTTATTTGTTAATAATAATA JJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2605:1367_2:N:0:NAGATC/2 141 * 0 0 * * 0 0 TATTATTATTAACAAATAAAAATTATAT FJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2605:1367_1:N:0:NAGATC/1 77 * 0 0 * * 0 0 ATATAATTTTTATTTGTTAATAATAATA JJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2605:1367_2:N:0:NAGATC/2 141 * 0 0 * * 0 0 TATTATTATTAACAAATAAAAATTATAT FJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP >>> Writing bisulfite mapping results to CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 29155 (72.89%) aligned concordantly 0 times 4807 (12.02%) aligned concordantly exactly 1 time 6038 (15.10%) aligned concordantly >1 times 27.11% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 29157 (72.89%) aligned concordantly 0 times 4779 (11.95%) aligned concordantly exactly 1 time 6064 (15.16%) aligned concordantly >1 times 27.11% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11375 Mapping efficiency: 28.4% Sequence pairs with no alignments under any condition: 24481 Sequence pairs did not map uniquely: 4144 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5675 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5700 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 353110 Total methylated C's in CpG context: 45645 Total methylated C's in CHG context: 1877 Total methylated C's in CHH context: 26628 Total methylated C's in Unknown context: 373 Total unmethylated C's in CpG context: 15552 Total unmethylated C's in CHG context: 72198 Total unmethylated C's in CHH context: 191210 Total unmethylated C's in Unknown context: 650 C methylated in CpG context: 74.6% C methylated in CHG context: 2.5% C methylated in CHH context: 12.2% C methylated in unknown context (CN or CHN): 36.5% Bismark completed in 0d 0h 1m 1s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH05_01_S8_L001_R1_001_val_1.fq.gz to CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH05_01_S8_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH05_01_S8_L001_R2_001_val_2.fq.gz to CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH05_01_S8_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:3112:1367_1:N:0:NCTTGA/1 77 * 0 0 * * 0 0 ATTATTATTTATTTATTTTAATTTTATTTTTTTTTAATTAATTTTTTTATTTATTATTTTTTTTTTTTTTTTATTTTTTTT JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJFJJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:3112:1367_2:N:0:NCTTGA/2 141 * 0 0 * * 0 0 ACATATATAAATATAAAACCCAACCAAAAAAAACTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA FAJ-J-J-JJJ---FJJJ-7-FJA7JJJJJJJJ<-FJAJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:3112:1367_1:N:0:NCTTGA/1 77 * 0 0 * * 0 0 ATTATTATTTATTTATTTTAATTTTATTTTTTTTTAATTAATTTTTTTATTTATTATTTTTTTTTTTTTTTTATTTTTTTT JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJFJJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:3112:1367_2:N:0:NCTTGA/2 141 * 0 0 * * 0 0 ACATATATAAATATAAAACCCAACCAAAAAAAACTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA FAJ-J-J-JJJ---FJJJ-7-FJA7JJJJJJJJ<-FJAJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP >>> Writing bisulfite mapping results to CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 25216 (63.04%) aligned concordantly 0 times 3794 (9.48%) aligned concordantly exactly 1 time 10990 (27.48%) aligned concordantly >1 times 36.96% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 25088 (62.72%) aligned concordantly 0 times 3777 (9.44%) aligned concordantly exactly 1 time 11135 (27.84%) aligned concordantly >1 times 37.28% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 10452 Mapping efficiency: 26.1% Sequence pairs with no alignments under any condition: 21322 Sequence pairs did not map uniquely: 8226 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5252 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5200 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 261122 Total methylated C's in CpG context: 16430 Total methylated C's in CHG context: 1755 Total methylated C's in CHH context: 70453 Total methylated C's in Unknown context: 682 Total unmethylated C's in CpG context: 14047 Total unmethylated C's in CHG context: 40834 Total unmethylated C's in CHH context: 117603 Total unmethylated C's in Unknown context: 769 C methylated in CpG context: 53.9% C methylated in CHG context: 4.1% C methylated in CHH context: 37.5% C methylated in unknown context (CN or CHN): 47.0% Bismark completed in 0d 0h 1m 13s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH05_06_S9_L001_R1_001_val_1.fq.gz to CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH05_06_S9_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH05_06_S9_L001_R2_001_val_2.fq.gz to CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH05_06_S9_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2402:1367_1:N:0:NATCAG/1 77 * 0 0 * * 0 0 TTGATTTGTGTAGATTTGTGATGTAATAATGTGATGTTATTTGTATTTTTTAGTTTAAGTTTTTTTTTTTTTTT JJJJJJJJFJJJJJJFJJJJJJJJJJJJJJJFF7FJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2402:1367_2:N:0:NATCAG/2 141 * 0 0 * * 0 0 AAAAAAAAAAAAAAACTTAAACTAAAAAA JJJJJJJJJJJJJJJ<-->> Writing bisulfite mapping results to CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 29751 (74.38%) aligned concordantly 0 times 3038 (7.59%) aligned concordantly exactly 1 time 7211 (18.03%) aligned concordantly >1 times 25.62% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 29827 (74.57%) aligned concordantly 0 times 2875 (7.19%) aligned concordantly exactly 1 time 7298 (18.25%) aligned concordantly >1 times 25.43% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 7392 Mapping efficiency: 18.5% Sequence pairs with no alignments under any condition: 26796 Sequence pairs did not map uniquely: 5812 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 3734 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 3658 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 200086 Total methylated C's in CpG context: 2119 Total methylated C's in CHG context: 815 Total methylated C's in CHH context: 31548 Total methylated C's in Unknown context: 260 Total unmethylated C's in CpG context: 22432 Total unmethylated C's in CHG context: 31203 Total unmethylated C's in CHH context: 111969 Total unmethylated C's in Unknown context: 533 C methylated in CpG context: 8.6% C methylated in CHG context: 2.5% C methylated in CHH context: 22.0% C methylated in unknown context (CN or CHN): 32.8% Bismark completed in 0d 0h 1m 1s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH05_21_S10_L001_R1_001_val_1.fq.gz to CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH05_21_S10_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH05_21_S10_L001_R2_001_val_2.fq.gz to CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH05_21_S10_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2889:1367_1:N:0:NAGCTT/1 77 * 0 0 * * 0 0 AATGTTTTTTATTGATTATTAAATAATTTTATAATATTAAAATATGTATTATTATTATAGATAATAATTTTATAATATTAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2889:1367_2:N:0:NAGCTT/2 141 * 0 0 * * 0 0 ATAAATAATTTATATTATTTAATAATATTTATTTTATTTTATATTTAATTTAATATTTATAATAATAATACATATTT JJJJJJ7JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJ>> Writing bisulfite mapping results to CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 27558 (68.89%) aligned concordantly 0 times 4814 (12.04%) aligned concordantly exactly 1 time 7628 (19.07%) aligned concordantly >1 times 31.11% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 27513 (68.78%) aligned concordantly 0 times 4797 (11.99%) aligned concordantly exactly 1 time 7690 (19.23%) aligned concordantly >1 times 31.22% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11871 Mapping efficiency: 29.7% Sequence pairs with no alignments under any condition: 22766 Sequence pairs did not map uniquely: 5363 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5975 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5896 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 332448 Total methylated C's in CpG context: 31036 Total methylated C's in CHG context: 2093 Total methylated C's in CHH context: 49972 Total methylated C's in Unknown context: 561 Total unmethylated C's in CpG context: 15260 Total unmethylated C's in CHG context: 63202 Total unmethylated C's in CHH context: 170885 Total unmethylated C's in Unknown context: 732 C methylated in CpG context: 67.0% C methylated in CHG context: 3.2% C methylated in CHH context: 22.6% C methylated in unknown context (CN or CHN): 43.4% Bismark completed in 0d 0h 1m 3s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH05_24_S11_L001_R1_001_val_1.fq.gz to CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH05_24_S11_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH05_24_S11_L001_R2_001_val_2.fq.gz to CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH05_24_S11_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:1945:1384_1:N:0:NGCTAC/1 99 PGA_scaffold11__78_contigs__length_11409253_CT_converted 1558303 0 4M4I71M = 1558303 -75 ATTAATATTTTGTTAGTGTTTGTTGTTGTATTAATGAAGGTTGTTTTTTTATGTAGTTGGATTATTAGGTGGGTGGTAG JJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJJJJJJJJ AS:i:-35 XN:i:0 XM:i:3 XO:i:1 XG:i:4 NM:i:7 MD:Z:1G0G0G71 YS:i:-35 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:1945:1384_2:N:0:NGCTAC/2 147 PGA_scaffold11__78_contigs__length_11409253_CT_converted 1558303 0 4M4I71M = 1558303 -75 ATTAATATTTTGTTAGTGTTTGTTGTTGTATTAATGAAGGTTGTTTTTTTATGTAGTTGGATTATTAGGTGGGTGGTAG JJJJJJJFJJFJJJJJ>> Writing bisulfite mapping results to CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 26178 (65.44%) aligned concordantly 0 times 5121 (12.80%) aligned concordantly exactly 1 time 8701 (21.75%) aligned concordantly >1 times 34.55% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 26139 (65.35%) aligned concordantly 0 times 5161 (12.90%) aligned concordantly exactly 1 time 8700 (21.75%) aligned concordantly >1 times 34.65% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 12588 Mapping efficiency: 31.5% Sequence pairs with no alignments under any condition: 21090 Sequence pairs did not map uniquely: 6322 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 6364 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 6224 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 340319 Total methylated C's in CpG context: 40260 Total methylated C's in CHG context: 2150 Total methylated C's in CHH context: 46396 Total methylated C's in Unknown context: 483 Total unmethylated C's in CpG context: 14564 Total unmethylated C's in CHG context: 66283 Total unmethylated C's in CHH context: 170666 Total unmethylated C's in Unknown context: 845 C methylated in CpG context: 73.4% C methylated in CHG context: 3.1% C methylated in CHH context: 21.4% C methylated in unknown context (CN or CHN): 36.4% Bismark completed in 0d 0h 1m 5s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH07_06_S12_L001_R1_001_val_1.fq.gz to CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH07_06_S12_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH07_06_S12_L001_R2_001_val_2.fq.gz to CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH07_06_S12_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2077:1367_1:N:0:NGTCAA/1 77 * 0 0 * * 0 0 GATGTTGGGGAGATGGTGATTGAGTATGTTGGATAGGTGAGTGGTGAT JJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJAJJJJJJJJJJJJFJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2077:1367_2:N:0:NGTCAA/2 141 * 0 0 * * 0 0 ATCACCACTCACCTATCCAACATACTCAATCACCATCTCCCCAACATC JFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFJJFJJJJJJJJJJJJJ YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2077:1367_1:N:0:NGTCAA/1 83 PGA_scaffold32__48_contigs__length_8091588_GA_converted 2907018 42 48M = 2907018 -48 ATCACCACTCACCTATCCAACATACTCAATCACCATCTCCCCAACATC JJJFJJJJJJJJJJJJAJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJ AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:48 YS:i:0 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2077:1367_2:N:0:NGTCAA/2 163 PGA_scaffold32__48_contigs__length_8091588_GA_converted 2907018 42 48M = 2907018 -48 ATCACCACTCACCTATCCAACATACTCAATCACCATCTCCCCAACATC JFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFJJFJJJJJJJJJJJJJ AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:48 YS:i:0 YT:Z:CP >>> Writing bisulfite mapping results to CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 28241 (70.60%) aligned concordantly 0 times 4623 (11.56%) aligned concordantly exactly 1 time 7136 (17.84%) aligned concordantly >1 times 29.40% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 28207 (70.52%) aligned concordantly 0 times 4699 (11.75%) aligned concordantly exactly 1 time 7094 (17.73%) aligned concordantly >1 times 29.48% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11241 Mapping efficiency: 28.1% Sequence pairs with no alignments under any condition: 23687 Sequence pairs did not map uniquely: 5072 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5682 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5559 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 324742 Total methylated C's in CpG context: 34758 Total methylated C's in CHG context: 1840 Total methylated C's in CHH context: 36921 Total methylated C's in Unknown context: 456 Total unmethylated C's in CpG context: 16926 Total unmethylated C's in CHG context: 61450 Total unmethylated C's in CHH context: 172847 Total unmethylated C's in Unknown context: 773 C methylated in CpG context: 67.3% C methylated in CHG context: 2.9% C methylated in CHH context: 17.6% C methylated in unknown context (CN or CHN): 37.1% Bismark completed in 0d 0h 1m 2s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH07_11_S13_L001_R1_001_val_1.fq.gz to CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH07_11_S13_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH07_11_S13_L001_R2_001_val_2.fq.gz to CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH07_11_S13_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2057:1367_1:N:0:NGTTCC/1 99 PGA_scaffold10__58_contigs__length_8083807_CT_converted 7923881 0 26M = 7923881 -26 TTTTATAATTTATATATATTATAATT JJJJJJJJJJJJJJJJJJJJJJJJJJ AS:i:-6 XS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:4G21 YS:i:-6 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2057:1367_2:N:0:NGTTCC/2 147 PGA_scaffold10__58_contigs__length_8083807_CT_converted 7923881 0 26M = 7923881 -26 TTTTATAATTTATATATATTATAATT JFFJJJJJJJJJJFJJJJJJJJJJJJ AS:i:-6 XS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:4G21 YS:i:-6 YT:Z:CP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2057:1367_1:N:0:NGTTCC/1 83 PGA_scaffold25__121_contigs__length_9021638_GA_converted 8608100 0 26M = 8608100 -26 AATTATAATATATATAAATTATAAAA JJJJJJJJJJJJJJJJJJJJJJJJJJ AS:i:-6 XS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:3A22 YS:i:-6 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2057:1367_2:N:0:NGTTCC/2 163 PGA_scaffold25__121_contigs__length_9021638_GA_converted 8608100 0 26M = 8608100 -26 AATTATAATATATATAAATTATAAAA JJJJJJJJJJJJFJJJJJJJJJJFFJ AS:i:-6 XS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:3A22 YS:i:-6 YT:Z:CP >>> Writing bisulfite mapping results to CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 30141 (75.35%) aligned concordantly 0 times 3094 (7.74%) aligned concordantly exactly 1 time 6765 (16.91%) aligned concordantly >1 times 24.65% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 30155 (75.39%) aligned concordantly 0 times 3034 (7.58%) aligned concordantly exactly 1 time 6811 (17.03%) aligned concordantly >1 times 24.61% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 7401 Mapping efficiency: 18.5% Sequence pairs with no alignments under any condition: 27194 Sequence pairs did not map uniquely: 5405 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 3709 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 3692 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 194680 Total methylated C's in CpG context: 2160 Total methylated C's in CHG context: 1042 Total methylated C's in CHH context: 30653 Total methylated C's in Unknown context: 384 Total unmethylated C's in CpG context: 21368 Total unmethylated C's in CHG context: 30637 Total unmethylated C's in CHH context: 108820 Total unmethylated C's in Unknown context: 642 C methylated in CpG context: 9.2% C methylated in CHG context: 3.3% C methylated in CHH context: 22.0% C methylated in unknown context (CN or CHN): 37.4% Bismark completed in 0d 0h 0m 58s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH07_24_S14_L001_R1_001_val_1.fq.gz to CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH07_24_S14_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH07_24_S14_L001_R2_001_val_2.fq.gz to CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH07_24_S14_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2544:1367_1:N:0:NTGTCA/1 99 PGA_scaffold40__81_contigs__length_9975379_CT_converted 9121375 1 81M = 9121423 129 GGGTTTAAAAAGAAGTGAAAAATATTTATGATTTTATAATATAATTTTTTGTTATATTTGATTGGTATTTATTTTATGAAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:81 YS:i:0 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2544:1367_2:N:0:NTGTCA/2 147 PGA_scaffold40__81_contigs__length_9975379_CT_converted 9121423 1 81M = 9121375 -129 TTGTTATATTTGATTGGTATTTATTTTATGAAAAATAGTTATTTATTAAAATAATGATATTATTAAATAAATAATATTAGT JJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:81 YS:i:0 YT:Z:CP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2544:1367_1:N:0:NTGTCA/1 83 PGA_scaffold3__77_contigs__length_22140449_GA_converted 2071480 1 81M = 2071432 -129 TTTCATAAAATAAATACCAATCAAATATAACAAAAAATTATATTATAAAATCATAAATATTTTTCACTTCTTTTTAAACCC JJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:81 YS:i:0 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2544:1367_2:N:0:NTGTCA/2 163 PGA_scaffold3__77_contigs__length_22140449_GA_converted 2071432 1 81M = 2071480 129 ACTAATATTATTTATTTAATAATATCATTATTTTAATAAATAACTATTTTTCATAAAATAAATACCAATCAAATATAACAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJ AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:81 YS:i:0 YT:Z:CP >>> Writing bisulfite mapping results to CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 27668 (69.17%) aligned concordantly 0 times 3504 (8.76%) aligned concordantly exactly 1 time 8828 (22.07%) aligned concordantly >1 times 30.83% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 27821 (69.55%) aligned concordantly 0 times 3416 (8.54%) aligned concordantly exactly 1 time 8763 (21.91%) aligned concordantly >1 times 30.45% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 8617 Mapping efficiency: 21.5% Sequence pairs with no alignments under any condition: 24320 Sequence pairs did not map uniquely: 7063 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 4224 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 4393 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 220377 Total methylated C's in CpG context: 2042 Total methylated C's in CHG context: 937 Total methylated C's in CHH context: 33312 Total methylated C's in Unknown context: 359 Total unmethylated C's in CpG context: 23000 Total unmethylated C's in CHG context: 33654 Total unmethylated C's in CHH context: 127432 Total unmethylated C's in Unknown context: 696 C methylated in CpG context: 8.2% C methylated in CHG context: 2.7% C methylated in CHH context: 20.7% C methylated in unknown context (CN or CHN): 34.0% Bismark completed in 0d 0h 0m 59s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH09_02_S15_L001_R1_001_val_1.fq.gz to CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH09_02_S15_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH09_02_S15_L001_R2_001_val_2.fq.gz to CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH09_02_S15_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2991:1367_1:N:0:NCGTCC/1 77 * 0 0 * * 0 0 TATGGATTGTTTAGTAATTTGATTTATGATTTTTTATTTATTAGTGGTTGAATAGTATTGGATTTAGATAGTAATTT JFJJJJJJJJJ<>> Writing bisulfite mapping results to CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 26476 (66.19%) aligned concordantly 0 times 4550 (11.38%) aligned concordantly exactly 1 time 8974 (22.43%) aligned concordantly >1 times 33.81% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 26422 (66.06%) aligned concordantly 0 times 4684 (11.71%) aligned concordantly exactly 1 time 8894 (22.23%) aligned concordantly >1 times 33.95% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11594 Mapping efficiency: 29.0% Sequence pairs with no alignments under any condition: 21966 Sequence pairs did not map uniquely: 6440 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5847 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5747 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 298641 Total methylated C's in CpG context: 30191 Total methylated C's in CHG context: 2027 Total methylated C's in CHH context: 46592 Total methylated C's in Unknown context: 567 Total unmethylated C's in CpG context: 13565 Total unmethylated C's in CHG context: 53212 Total unmethylated C's in CHH context: 153054 Total unmethylated C's in Unknown context: 881 C methylated in CpG context: 69.0% C methylated in CHG context: 3.7% C methylated in CHH context: 23.3% C methylated in unknown context (CN or CHN): 39.2% Bismark completed in 0d 0h 1m 7s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH09_13_S16_L001_R1_001_val_1.fq.gz to CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH09_13_S16_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH09_13_S16_L001_R2_001_val_2.fq.gz to CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH09_13_S16_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2301:1367_1:N:0:NTCCGC/1 77 * 0 0 * * 0 0 ATTAATTTAATTTAGTTATAAATTTTATAAATGTTTTTTTAATTTTTTTTTATTTGAGTTATTTTTTTTAAAAATAATTT JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFJJJJJJJJFJJJJJJJJJJJJFJJJFFJJJJJJJJJJJJ YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2301:1367_2:N:0:NTCCGC/2 141 * 0 0 * * 0 0 TATATAATACATTATTTAAAAATTAATTTTATTTTTTAAATTATTTTTAAAAAAAATAACTCAAATAAAAAAAAATTAAAA JJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFAJAAFFJJJJJJJJF<7AAAJ7AF>> Writing bisulfite mapping results to CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 26572 (66.43%) aligned concordantly 0 times 4766 (11.91%) aligned concordantly exactly 1 time 8662 (21.66%) aligned concordantly >1 times 33.57% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 26366 (65.92%) aligned concordantly 0 times 5022 (12.55%) aligned concordantly exactly 1 time 8612 (21.53%) aligned concordantly >1 times 34.09% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 12161 Mapping efficiency: 30.4% Sequence pairs with no alignments under any condition: 21599 Sequence pairs did not map uniquely: 6240 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 6138 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 6023 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 357895 Total methylated C's in CpG context: 21379 Total methylated C's in CHG context: 1799 Total methylated C's in CHH context: 48791 Total methylated C's in Unknown context: 508 Total unmethylated C's in CpG context: 19792 Total unmethylated C's in CHG context: 59742 Total unmethylated C's in CHH context: 206392 Total unmethylated C's in Unknown context: 818 C methylated in CpG context: 51.9% C methylated in CHG context: 2.9% C methylated in CHH context: 19.1% C methylated in unknown context (CN or CHN): 38.3% Bismark completed in 0d 0h 1m 9s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH09_28_S17_L001_R1_001_val_1.fq.gz to CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH09_28_S17_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH09_28_S17_L001_R2_001_val_2.fq.gz to CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH09_28_S17_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2788:1367_1:N:0:NTGAAA/1 77 * 0 0 * * 0 0 AGAGTATTAAGGAAGAATAGATAGGAATAGTTTTATTGAATTTAATGAGGTATTAAGAGAGAGATATTGAATGTAAGGGAA JJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAFJJJJJJJJJJJJJJJJJJJJFF YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2788:1367_2:N:0:NTGAAA/2 141 * 0 0 * * 0 0 CTCCTCCTCTTAAAATACAAACTTATACACTTCCCTTACATTCAATATCTCTCTCTTAATACCTCATTAAATTCAATAAAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2788:1367_1:N:0:NTGAAA/1 77 * 0 0 * * 0 0 AGAGTATTAAGGAAGAATAGATAGGAATAGTTTTATTGAATTTAATGAGGTATTAAGAGAGAGATATTGAATGTAAGGGAA JJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAFJJJJJJJJJJJJJJJJJJJJFF YT:Z:UP K00337:413:HKTCHBBXY:1:1101:2788:1367_2:N:0:NTGAAA/2 141 * 0 0 * * 0 0 CTCCTCCTCTTAAAATACAAACTTATACACTTCCCTTACATTCAATATCTCTCTCTTAATACCTCATTAAATTCAATAAAA JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ YT:Z:UP >>> Writing bisulfite mapping results to CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 29379 (73.45%) aligned concordantly 0 times 4654 (11.63%) aligned concordantly exactly 1 time 5967 (14.92%) aligned concordantly >1 times 26.55% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 29422 (73.56%) aligned concordantly 0 times 4536 (11.34%) aligned concordantly exactly 1 time 6042 (15.11%) aligned concordantly >1 times 26.45% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 10820 Mapping efficiency: 27.1% Sequence pairs with no alignments under any condition: 24913 Sequence pairs did not map uniquely: 4267 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5404 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5416 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 306228 Total methylated C's in CpG context: 33551 Total methylated C's in CHG context: 2155 Total methylated C's in CHH context: 31153 Total methylated C's in Unknown context: 396 Total unmethylated C's in CpG context: 13846 Total unmethylated C's in CHG context: 59723 Total unmethylated C's in CHH context: 165800 Total unmethylated C's in Unknown context: 771 C methylated in CpG context: 70.8% C methylated in CHG context: 3.5% C methylated in CHH context: 15.8% C methylated in unknown context (CN or CHN): 33.9% Bismark completed in 0d 0h 0m 57s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH10_01_S18_L001_R1_001_val_1.fq.gz to CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH10_01_S18_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH10_01_S18_L001_R2_001_val_2.fq.gz to CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH10_01_S18_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:3021:1384_1:N:0:NTTTCG/1 77 * 0 0 * * 0 0 TAGGTTATGGAGTATTGAGAGGGGATTTTGTATTGTTTTGTTATAGAGGAGTTTAAAAGGAGAGAATTTAGTTTAGTTATT JJJJJJJJJJJJJJJFJJJFFAJJF>> Writing bisulfite mapping results to CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 28028 (70.07%) aligned concordantly 0 times 4815 (12.04%) aligned concordantly exactly 1 time 7157 (17.89%) aligned concordantly >1 times 29.93% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 27835 (69.59%) aligned concordantly 0 times 4962 (12.40%) aligned concordantly exactly 1 time 7203 (18.01%) aligned concordantly >1 times 30.41% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11719 Mapping efficiency: 29.3% Sequence pairs with no alignments under any condition: 23157 Sequence pairs did not map uniquely: 5124 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5784 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5935 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 326695 Total methylated C's in CpG context: 35976 Total methylated C's in CHG context: 2121 Total methylated C's in CHH context: 33948 Total methylated C's in Unknown context: 457 Total unmethylated C's in CpG context: 13425 Total unmethylated C's in CHG context: 63208 Total unmethylated C's in CHH context: 178017 Total unmethylated C's in Unknown context: 725 C methylated in CpG context: 72.8% C methylated in CHG context: 3.2% C methylated in CHH context: 16.0% C methylated in unknown context (CN or CHN): 38.7% Bismark completed in 0d 0h 0m 58s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH10_08_S19_L001_R1_001_val_1.fq.gz to CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH10_08_S19_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH10_08_S19_L001_R2_001_val_2.fq.gz to CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH10_08_S19_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2179:1367_1:N:0:NGTACG/1 99 contig_58_pilon__uns_CT_converted 269 30 55M = 269 -55 TGAGGGGTTAGTTGTTGGTAGTAGATTGAGTTTTTGTAGGAGTTGGAGGTGTGTT JJFJJJJJJJJJJJJJF-FFJAAJJJJJFJFJJJJJFJAJFJAFJAJJFJ>> Writing bisulfite mapping results to CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 26202 (65.50%) aligned concordantly 0 times 3657 (9.14%) aligned concordantly exactly 1 time 10141 (25.35%) aligned concordantly >1 times 34.49% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 26330 (65.83%) aligned concordantly 0 times 3629 (9.07%) aligned concordantly exactly 1 time 10041 (25.10%) aligned concordantly >1 times 34.17% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 9907 Mapping efficiency: 24.8% Sequence pairs with no alignments under any condition: 22552 Sequence pairs did not map uniquely: 7541 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 4914 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 4993 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 246661 Total methylated C's in CpG context: 9354 Total methylated C's in CHG context: 1670 Total methylated C's in CHH context: 69624 Total methylated C's in Unknown context: 697 Total unmethylated C's in CpG context: 18049 Total unmethylated C's in CHG context: 36621 Total unmethylated C's in CHH context: 111343 Total unmethylated C's in Unknown context: 842 C methylated in CpG context: 34.1% C methylated in CHG context: 4.4% C methylated in CHH context: 38.5% C methylated in unknown context (CN or CHN): 45.3% Bismark completed in 0d 0h 1m 10s ==================== Bismark run complete ==================== Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893. Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools' Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ (absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)' FastQ format assumed (by default) Processing sequences up to read no. 40000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-dumoar'): /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /gscratch/scrubbed/sr320/031223-dumoar Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz Input files are in FastQ format Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz Writing a C -> T converted version of the input file CH10_11_S20_L001_R1_001_val_1.fq.gz to CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file CH10_11_S20_L001_R1_001_val_1.fq.gz (40001 sequences in total) Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz Writing a G -> A converted version of the input file CH10_11_S20_L001_R2_001_val_2.fq.gz to CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file CH10_11_S20_L001_R2_001_val_2.fq.gz (40001 sequences in total) Input files are CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: K00337:413:HKTCHBBXY:1:1101:2098:1367_1:N:0:NAGTGG/1 99 PGA_scaffold28__73_contigs__length_10794191_CT_converted 2481591 32 29M = 2481591 -29 ATAAATATTTTTTATATTTTTTTTTTTTT JJJJJJJJFJFJJJJJJJJJJJJJJJJJJ AS:i:0 XS:i:-6 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:29 YS:i:0 YT:Z:CP K00337:413:HKTCHBBXY:1:1101:2098:1367_2:N:0:NAGTGG/2 147 PGA_scaffold28__73_contigs__length_10794191_CT_converted 2481591 32 29M = 2481591 -29 ATAAATATTTTTTATATTTTTTTTTTTTT >> Writing bisulfite mapping results to CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz 40000 reads; of these: 40000 (100.00%) were paired; of these: 27370 (68.42%) aligned concordantly 0 times 4698 (11.74%) aligned concordantly exactly 1 time 7932 (19.83%) aligned concordantly >1 times 31.57% overall alignment rate 40000 reads; of these: 40000 (100.00%) were paired; of these: 27259 (68.15%) aligned concordantly 0 times 4730 (11.82%) aligned concordantly exactly 1 time 8011 (20.03%) aligned concordantly >1 times 31.85% overall alignment rate Processed 40000 sequences in total Successfully deleted the temporary files CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 40000 Number of paired-end alignments with a unique best hit: 11468 Mapping efficiency: 28.7% Sequence pairs with no alignments under any condition: 22715 Sequence pairs did not map uniquely: 5817 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 Number of sequence pairs with unique best (first) alignment came from the bowtie output: CT/GA/CT: 5702 ((converted) top strand) GA/CT/CT: 0 (complementary to (converted) top strand) GA/CT/GA: 0 (complementary to (converted) bottom strand) CT/GA/GA: 5766 ((converted) bottom strand) Number of alignments to (merely theoretical) complementary strands being rejected in total: 0 Final Cytosine Methylation Report ================================= Total number of C's analysed: 303522 Total methylated C's in CpG context: 28865 Total methylated C's in CHG context: 1795 Total methylated C's in CHH context: 38188 Total methylated C's in Unknown context: 441 Total unmethylated C's in CpG context: 13798 Total unmethylated C's in CHG context: 55713 Total unmethylated C's in CHH context: 165163 Total unmethylated C's in Unknown context: 912 C methylated in CpG context: 67.7% C methylated in CHG context: 3.1% C methylated in CHH context: 18.8% C methylated in unknown context (CN or CHN): 32.6% Bismark completed in 0d 0h 1m 5s ==================== Bismark run complete ==================== Processing paired-end Bismark output file(s) (SAM format): CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam: 11805 Total number duplicated alignments removed: 2285 (19.36%) Duplicated alignments were found at: 1723 different position(s) Total count of deduplicated leftover sequences: 9520 (80.64% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam: 11548 Total number duplicated alignments removed: 2446 (21.18%) Duplicated alignments were found at: 1736 different position(s) Total count of deduplicated leftover sequences: 9102 (78.82% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam: 11862 Total number duplicated alignments removed: 2289 (19.30%) Duplicated alignments were found at: 1728 different position(s) Total count of deduplicated leftover sequences: 9573 (80.70% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam: 11572 Total number duplicated alignments removed: 2240 (19.36%) Duplicated alignments were found at: 1699 different position(s) Total count of deduplicated leftover sequences: 9332 (80.64% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam: 8475 Total number duplicated alignments removed: 1247 (14.71%) Duplicated alignments were found at: 944 different position(s) Total count of deduplicated leftover sequences: 7228 (85.29% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam: 7978 Total number duplicated alignments removed: 1573 (19.72%) Duplicated alignments were found at: 1152 different position(s) Total count of deduplicated leftover sequences: 6405 (80.28% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam: 11375 Total number duplicated alignments removed: 2402 (21.12%) Duplicated alignments were found at: 1720 different position(s) Total count of deduplicated leftover sequences: 8973 (78.88% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam: 10452 Total number duplicated alignments removed: 1687 (16.14%) Duplicated alignments were found at: 1304 different position(s) Total count of deduplicated leftover sequences: 8765 (83.86% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam: 7392 Total number duplicated alignments removed: 1486 (20.10%) Duplicated alignments were found at: 1075 different position(s) Total count of deduplicated leftover sequences: 5906 (79.90% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam: 11871 Total number duplicated alignments removed: 2731 (23.01%) Duplicated alignments were found at: 1895 different position(s) Total count of deduplicated leftover sequences: 9140 (76.99% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam: 12588 Total number duplicated alignments removed: 2437 (19.36%) Duplicated alignments were found at: 1798 different position(s) Total count of deduplicated leftover sequences: 10151 (80.64% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam: 11241 Total number duplicated alignments removed: 2318 (20.62%) Duplicated alignments were found at: 1716 different position(s) Total count of deduplicated leftover sequences: 8923 (79.38% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam: 7401 Total number duplicated alignments removed: 1574 (21.27%) Duplicated alignments were found at: 1140 different position(s) Total count of deduplicated leftover sequences: 5827 (78.73% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam: 8617 Total number duplicated alignments removed: 1598 (18.54%) Duplicated alignments were found at: 1169 different position(s) Total count of deduplicated leftover sequences: 7019 (81.46% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam: 11594 Total number duplicated alignments removed: 2226 (19.20%) Duplicated alignments were found at: 1649 different position(s) Total count of deduplicated leftover sequences: 9368 (80.80% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam: 12161 Total number duplicated alignments removed: 2288 (18.81%) Duplicated alignments were found at: 1699 different position(s) Total count of deduplicated leftover sequences: 9873 (81.19% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam: 10820 Total number duplicated alignments removed: 2155 (19.92%) Duplicated alignments were found at: 1626 different position(s) Total count of deduplicated leftover sequences: 8665 (80.08% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam: 11719 Total number duplicated alignments removed: 2043 (17.43%) Duplicated alignments were found at: 1570 different position(s) Total count of deduplicated leftover sequences: 9676 (82.57% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam: 9907 Total number duplicated alignments removed: 1638 (16.53%) Duplicated alignments were found at: 1219 different position(s) Total count of deduplicated leftover sequences: 8269 (83.47% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz" Processing paired-end Bismark output file(s) (SAM format): CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads. Checking file >>CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation... Now testing Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...) ...passed! Output file is: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping header line: @HD VN:1.0 SO:unsorted skipping header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping header line: @SQ SN:contig_580_pilon__uns LN:847 skipping header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping header line: @SQ SN:contig_613_pilon__uns LN:648 skipping header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping header line: @SQ SN:contig_655_pilon__uns LN:779 skipping header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping header line: @SQ SN:contig_709_pilon__uns LN:860 skipping header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping header line: @SQ SN:contig_733_pilon__uns LN:511 skipping header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping header line: @SQ SN:contig_777_pilon__uns LN:804 skipping header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping header line: @SQ SN:contig_782_pilon__uns LN:760 skipping header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping header line: @SQ SN:contig_8626_pilon__uns LN:9308 skippin Total number of alignments analysed in CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam: 11468 Total number duplicated alignments removed: 2207 (19.24%) Duplicated alignments were found at: 1678 different position(s) Total count of deduplicated leftover sequences: 9261 (80.76% of total) g header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping header line: @SQ SN:contig_902_pilon__uns LN:740 skipping header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping header line: @SQ SN:contig_973_pilon__uns LN:738 skipping header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz" *** Bismark methylation extractor version v0.21.0 *** Trying to determine the type of mapping from the SAM header line of file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Treating file(s) as paired-end data (as extracted from @PG line) Setting option '--no_overlap' since this is (normally) the right thing to do for paired-end data Core usage currently set to more than 20 threads. Let's see how this goes... (set value: 28) Summarising Bismark methylation extractor parameters: =============================================================== Bismark paired-end SAM format specified (default) Number of cores to be used: 28 Strand-specific outputs will be skipped. Separate output files for cytosines in CpG, CHG and CHH context will be generated Merge CHG and CHH context to non-CpG context specified Output will be written to the current directory ('/gscratch/scrubbed/sr320/031223-dumoar') Summarising bedGraph parameters: =============================================================== Generating additional output in bedGraph and coverage format bedGraph format: coverage format: Using a cutoff of 1 read(s) to report cytosine positions Reporting and sorting cytosine methylation information in CpG context only (default) The bedGraph UNIX sort command will use the following memory setting: '75%'. Temporary directory used for sorting is the output directory Checking file >>CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9520 lines in total Total number of methylation call strings processed: 19040 Final Cytosine Methylation Report ================================= Total number of C's analysed: 170858 Total methylated C's in CpG context: 21652 Total methylated C's in CHG context: 860 Total methylated C's in CHH context: 14743 Total C to T conversions in CpG context: 7081 Total C to T conversions in CHG context: 33856 Total C to T conversions in CHH context: 92666 C methylated in CpG context: 75.4% C methylated in non-CpG context: 11.0% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9102 lines in total Total number of methylation call strings processed: 18204 Final Cytosine Methylation Report ================================= Total number of C's analysed: 136522 Total methylated C's in CpG context: 13983 Total methylated C's in CHG context: 761 Total methylated C's in CHH context: 17512 Total C to T conversions in CpG context: 6349 Total C to T conversions in CHG context: 24543 Total C to T conversions in CHH context: 73374 C methylated in CpG context: 68.8% C methylated in non-CpG context: 15.7% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9573 lines in total Total number of methylation call strings processed: 19146 Final Cytosine Methylation Report ================================= Total number of C's analysed: 171369 Total methylated C's in CpG context: 17817 Total methylated C's in CHG context: 802 Total methylated C's in CHH context: 16011 Total C to T conversions in CpG context: 8137 Total C to T conversions in CHG context: 32706 Total C to T conversions in CHH context: 95896 C methylated in CpG context: 68.6% C methylated in non-CpG context: 11.6% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9332 lines in total Total number of methylation call strings processed: 18664 Final Cytosine Methylation Report ================================= Total number of C's analysed: 144393 Total methylated C's in CpG context: 14129 Total methylated C's in CHG context: 865 Total methylated C's in CHH context: 20560 Total C to T conversions in CpG context: 6281 Total C to T conversions in CHG context: 26198 Total C to T conversions in CHH context: 76360 C methylated in CpG context: 69.2% C methylated in non-CpG context: 17.3% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 7228 lines in total Total number of methylation call strings processed: 14456 Final Cytosine Methylation Report ================================= Total number of C's analysed: 103908 Total methylated C's in CpG context: 1499 Total methylated C's in CHG context: 738 Total methylated C's in CHH context: 38465 Total C to T conversions in CpG context: 9573 Total C to T conversions in CHG context: 12513 Total C to T conversions in CHH context: 41120 C methylated in CpG context: 13.5% C methylated in non-CpG context: 42.2% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 6405 lines in total Total number of methylation call strings processed: 12810 Final Cytosine Methylation Report ================================= Total number of C's analysed: 102885 Total methylated C's in CpG context: 2746 Total methylated C's in CHG context: 547 Total methylated C's in CHH context: 20652 Total C to T conversions in CpG context: 10417 Total C to T conversions in CHG context: 15940 Total C to T conversions in CHH context: 52583 C methylated in CpG context: 20.9% C methylated in non-CpG context: 23.6% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 8973 lines in total Total number of methylation call strings processed: 17946 Final Cytosine Methylation Report ================================= Total number of C's analysed: 174348 Total methylated C's in CpG context: 22001 Total methylated C's in CHG context: 941 Total methylated C's in CHH context: 13365 Total C to T conversions in CpG context: 7701 Total C to T conversions in CHG context: 35283 Total C to T conversions in CHH context: 95057 C methylated in CpG context: 74.1% C methylated in non-CpG context: 9.9% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 8765 lines in total Total number of methylation call strings processed: 17530 Final Cytosine Methylation Report ================================= Total number of C's analysed: 129943 Total methylated C's in CpG context: 7713 Total methylated C's in CHG context: 896 Total methylated C's in CHH context: 38267 Total C to T conversions in CpG context: 6771 Total C to T conversions in CHG context: 19227 Total C to T conversions in CHH context: 57069 C methylated in CpG context: 53.3% C methylated in non-CpG context: 33.9% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 5906 lines in total Total number of methylation call strings processed: 11812 Final Cytosine Methylation Report ================================= Total number of C's analysed: 109463 Total methylated C's in CpG context: 1150 Total methylated C's in CHG context: 478 Total methylated C's in CHH context: 17607 Total C to T conversions in CpG context: 11937 Total C to T conversions in CHG context: 16737 Total C to T conversions in CHH context: 61554 C methylated in CpG context: 8.8% C methylated in non-CpG context: 18.8% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9140 lines in total Total number of methylation call strings processed: 18280 Final Cytosine Methylation Report ================================= Total number of C's analysed: 155759 Total methylated C's in CpG context: 13950 Total methylated C's in CHG context: 1012 Total methylated C's in CHH context: 25631 Total C to T conversions in CpG context: 7182 Total C to T conversions in CHG context: 28767 Total C to T conversions in CHH context: 79217 C methylated in CpG context: 66.0% C methylated in non-CpG context: 19.8% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 10151 lines in total Total number of methylation call strings processed: 20302 Final Cytosine Methylation Report ================================= Total number of C's analysed: 157879 Total methylated C's in CpG context: 18130 Total methylated C's in CHG context: 1029 Total methylated C's in CHH context: 23490 Total C to T conversions in CpG context: 6681 Total C to T conversions in CHG context: 30022 Total C to T conversions in CHH context: 78527 C methylated in CpG context: 73.1% C methylated in non-CpG context: 18.4% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 8923 lines in total Total number of methylation call strings processed: 17846 Final Cytosine Methylation Report ================================= Total number of C's analysed: 159318 Total methylated C's in CpG context: 16744 Total methylated C's in CHG context: 912 Total methylated C's in CHH context: 18743 Total C to T conversions in CpG context: 8300 Total C to T conversions in CHG context: 29745 Total C to T conversions in CHH context: 84874 C methylated in CpG context: 66.9% C methylated in non-CpG context: 14.6% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 5827 lines in total Total number of methylation call strings processed: 11654 Final Cytosine Methylation Report ================================= Total number of C's analysed: 100121 Total methylated C's in CpG context: 1079 Total methylated C's in CHG context: 522 Total methylated C's in CHH context: 16038 Total C to T conversions in CpG context: 10663 Total C to T conversions in CHG context: 15566 Total C to T conversions in CHH context: 56253 C methylated in CpG context: 9.2% C methylated in non-CpG context: 18.7% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 7019 lines in total Total number of methylation call strings processed: 14038 Final Cytosine Methylation Report ================================= Total number of C's analysed: 113556 Total methylated C's in CpG context: 1029 Total methylated C's in CHG context: 490 Total methylated C's in CHH context: 17040 Total C to T conversions in CpG context: 11246 Total C to T conversions in CHG context: 16555 Total C to T conversions in CHH context: 67196 C methylated in CpG context: 8.4% C methylated in non-CpG context: 17.3% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9368 lines in total Total number of methylation call strings processed: 18736 Final Cytosine Methylation Report ================================= Total number of C's analysed: 137756 Total methylated C's in CpG context: 13275 Total methylated C's in CHG context: 960 Total methylated C's in CHH context: 24621 Total C to T conversions in CpG context: 6166 Total C to T conversions in CHG context: 23287 Total C to T conversions in CHH context: 69447 C methylated in CpG context: 68.3% C methylated in non-CpG context: 21.6% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9873 lines in total Total number of methylation call strings processed: 19746 Final Cytosine Methylation Report ================================= Total number of C's analysed: 183761 Total methylated C's in CpG context: 10389 Total methylated C's in CHG context: 919 Total methylated C's in CHH context: 25891 Total C to T conversions in CpG context: 9990 Total C to T conversions in CHG context: 29628 Total C to T conversions in CHH context: 106944 C methylated in CpG context: 51.0% C methylated in non-CpG context: 16.4% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 8665 lines in total Total number of methylation call strings processed: 17330 Final Cytosine Methylation Report ================================= Total number of C's analysed: 150440 Total methylated C's in CpG context: 15884 Total methylated C's in CHG context: 1059 Total methylated C's in CHH context: 15581 Total C to T conversions in CpG context: 6733 Total C to T conversions in CHG context: 29149 Total C to T conversions in CHH context: 82034 C methylated in CpG context: 70.2% C methylated in non-CpG context: 13.0% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9676 lines in total Total number of methylation call strings processed: 19352 Final Cytosine Methylation Report ================================= Total number of C's analysed: 161633 Total methylated C's in CpG context: 17616 Total methylated C's in CHG context: 1021 Total methylated C's in CHH context: 16826 Total C to T conversions in CpG context: 6537 Total C to T conversions in CHG context: 31004 Total C to T conversions in CHH context: 88629 C methylated in CpG context: 72.9% C methylated in non-CpG context: 13.0% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: 'CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 8269 lines in total Total number of methylation call strings processed: 16538 Final Cytosine Methylation Report ================================= Total number of C's analysed: 125903 Total methylated C's in CpG context: 4529 Total methylated C's in CHG context: 861 Total methylated C's in CHH context: 38101 Total C to T conversions in CpG context: 8891 Total C to T conversions in CHG context: 18073 Total C to T conversions in CHH context: 55448 C methylated in CpG context: 33.7% C methylated in non-CpG context: 34.6% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Checking file >>CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... Now testing Bismark result file >CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...) ...passed! Writing result file containing methylation information for C in CpG context to CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in any other context to Non_CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold0__40_contigs__length_4818635 LN:4818635 skipping SAM header line: @SQ SN:PGA_scaffold1__111_contigs__length_23635802 LN:23635802 skipping SAM header line: @SQ SN:PGA_scaffold2__216_contigs__length_42616187 LN:42616187 skipping SAM header line: @SQ SN:PGA_scaffold3__77_contigs__length_22140449 LN:22140449 skipping SAM header line: @SQ SN:PGA_scaffold4__118_contigs__length_24133938 LN:24133938 skipping SAM header line: @SQ SN:PGA_scaffold5__54_contigs__length_17529967 LN:17529967 skipping SAM header line: @SQ SN:PGA_scaffold6__2_contigs__length_4500 LN:4500 skipping SAM header line: @SQ SN:PGA_scaffold7__77_contigs__length_16129408 LN:16129408 skipping SAM header line: @SQ SN:PGA_scaffold8__70_contigs__length_6254265 LN:6254265 skipping SAM header line: @SQ SN:PGA_scaffold9__2_contigs__length_6774 LN:6774 skipping SAM header line: @SQ SN:PGA_scaffold10__58_contigs__length_8083807 LN:8083807 skipping SAM header line: @SQ SN:PGA_scaffold11__78_contigs__length_11409253 LN:11409253 skipping SAM header line: @SQ SN:PGA_scaffold12__214_contigs__length_38711105 LN:38711105 skipping SAM header line: @SQ SN:PGA_scaffold13__56_contigs__length_10281103 LN:10281103 skipping SAM header line: @SQ SN:PGA_scaffold14__49_contigs__length_6382615 LN:6382615 skipping SAM header line: @SQ SN:PGA_scaffold15__74_contigs__length_14466968 LN:14466968 skipping SAM header line: @SQ SN:PGA_scaffold16__99_contigs__length_13714835 LN:13714835 skipping SAM header line: @SQ SN:PGA_scaffold17__171_contigs__length_27881435 LN:27881435 skipping SAM header line: @SQ SN:PGA_scaffold18__98_contigs__length_15388888 LN:15388888 skipping SAM header line: @SQ SN:PGA_scaffold19__65_contigs__length_13296201 LN:13296201 skipping SAM header line: @SQ SN:PGA_scaffold20__42_contigs__length_7444180 LN:7444180 skipping SAM header line: @SQ SN:PGA_scaffold21__67_contigs__length_16858916 LN:16858916 skipping SAM header line: @SQ SN:PGA_scaffold22__59_contigs__length_10008237 LN:10008237 skipping SAM header line: @SQ SN:PGA_scaffold23__65_contigs__length_9586800 LN:9586800 skipping SAM header line: @SQ SN:PGA_scaffold24__25_contigs__length_9615596 LN:9615596 skipping SAM header line: @SQ SN:PGA_scaffold25__121_contigs__length_9021638 LN:9021638 skipping SAM header line: @SQ SN:PGA_scaffold26__34_contigs__length_3174094 LN:3174094 skipping SAM header line: @SQ SN:PGA_scaffold27__24_contigs__length_4511419 LN:4511419 skipping SAM header line: @SQ SN:PGA_scaffold28__73_contigs__length_10794191 LN:10794191 skipping SAM header line: @SQ SN:PGA_scaffold29__63_contigs__length_7458616 LN:7458616 skipping SAM header line: @SQ SN:PGA_scaffold30__53_contigs__length_3533588 LN:3533588 skipping SAM header line: @SQ SN:PGA_scaffold31__35_contigs__length_1951197 LN:1951197 skipping SAM header line: @SQ SN:PGA_scaffold32__48_contigs__length_8091588 LN:8091588 skipping SAM header line: @SQ SN:PGA_scaffold33__68_contigs__length_5591008 LN:5591008 skipping SAM header line: @SQ SN:PGA_scaffold34__18_contigs__length_2048619 LN:2048619 skipping SAM header line: @SQ SN:PGA_scaffold35__36_contigs__length_7416912 LN:7416912 skipping SAM header line: @SQ SN:PGA_scaffold36__50_contigs__length_8312113 LN:8312113 skipping SAM header line: @SQ SN:PGA_scaffold37__114_contigs__length_22981779 LN:22981779 skipping SAM header line: @SQ SN:PGA_scaffold38__30_contigs__length_10707134 LN:10707134 skipping SAM header line: @SQ SN:PGA_scaffold39__82_contigs__length_19157343 LN:19157343 skipping SAM header line: @SQ SN:PGA_scaffold40__81_contigs__length_9975379 LN:9975379 skipping SAM header line: @SQ SN:PGA_scaffold41__67_contigs__length_15779270 LN:15779270 skipping SAM header line: @SQ SN:PGA_scaffold42__119_contigs__length_25812110 LN:25812110 skipping SAM header line: @SQ SN:PGA_scaffold43__161_contigs__length_26349757 LN:26349757 skipping SAM header line: @SQ SN:PGA_scaffold44__101_contigs__length_25971783 LN:25971783 skipping SAM header line: @SQ SN:PGA_scaffold45__51_contigs__length_13476971 LN:13476971 skipping SAM header line: @SQ SN:PGA_scaffold46__73_contigs__length_12693875 LN:12693875 skipping SAM header line: @SQ SN:PGA_scaffold47__164_contigs__length_21858264 LN:21858264 skipping SAM header line: @SQ SN:PGA_scaffold48__117_contigs__length_14149252 LN:14149252 skipping SAM header line: @SQ SN:contig_1001_pilon__uns LN:24935 skipping SAM header line: @SQ SN:contig_1002_pilon__uns LN:4698 skipping SAM header line: @SQ SN:contig_1008_pilon__uns LN:57313 skipping SAM header line: @SQ SN:contig_1013_pilon__uns LN:9111 skipping SAM header line: @SQ SN:contig_1014_pilon__uns LN:44146 skipping SAM header line: @SQ SN:contig_1015_pilon__uns LN:40906 skipping SAM header line: @SQ SN:contig_1019_pilon__uns LN:8123 skipping SAM header line: @SQ SN:contig_1020_pilon__uns LN:6849 skipping SAM header line: @SQ SN:contig_1023_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1027_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_102_pilon__uns LN:10606 skipping SAM header line: @SQ SN:contig_1031_pilon__uns LN:12490 skipping SAM header line: @SQ SN:contig_1036_pilon__uns LN:13977 skipping SAM header line: @SQ SN:contig_103_pilon__uns LN:61341 skipping SAM header line: @SQ SN:contig_1041_pilon__uns LN:4253 skipping SAM header line: @SQ SN:contig_1042_pilon__uns LN:11130 skipping SAM header line: @SQ SN:contig_1043_pilon__uns LN:5439 skipping SAM header line: @SQ SN:contig_1044_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_1045_pilon__uns LN:47018 skipping SAM header line: @SQ SN:contig_1046_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_1049_pilon__uns LN:8757 skipping SAM header line: @SQ SN:contig_1052_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1058_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1059_pilon__uns LN:7499 skipping SAM header line: @SQ SN:contig_1060_pilon__uns LN:7596 skipping SAM header line: @SQ SN:contig_1063_pilon__uns LN:198857 skipping SAM header line: @SQ SN:contig_106_pilon__uns LN:33964 skipping SAM header line: @SQ SN:contig_1070_pilon__uns LN:5084 skipping SAM header line: @SQ SN:contig_1071_pilon__uns LN:154066 skipping SAM header line: @SQ SN:contig_1089_pilon__uns LN:68393 skipping SAM header line: @SQ SN:contig_1091_pilon__uns LN:100377 skipping SAM header line: @SQ SN:contig_1094_pilon__uns LN:87194 skipping SAM header line: @SQ SN:contig_1098_pilon__uns LN:37678 skipping SAM header line: @SQ SN:contig_1114_pilon__uns LN:8538 skipping SAM header line: @SQ SN:contig_1117_pilon__uns LN:6576 skipping SAM header line: @SQ SN:contig_1118_pilon__uns LN:71347 skipping SAM header line: @SQ SN:contig_111_pilon__uns LN:9197 skipping SAM header line: @SQ SN:contig_1120_pilon__uns LN:58926 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_1__uns LN:26964 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1121_pilon___frag_3__uns LN:119475 skipping SAM header line: @SQ SN:contig_1125_pilon__uns LN:66086 skipping SAM header line: @SQ SN:contig_1130_pilon__uns LN:6460 skipping SAM header line: @SQ SN:contig_1131_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_1__uns LN:61276 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1134_pilon___frag_3__uns LN:90619 skipping SAM header line: @SQ SN:contig_1139_pilon__uns LN:1537 skipping SAM header line: @SQ SN:contig_1143_pilon__uns LN:12495 skipping SAM header line: @SQ SN:contig_1144_pilon__uns LN:10336 skipping SAM header line: @SQ SN:contig_1148_pilon__uns LN:7436 skipping SAM header line: @SQ SN:contig_1152_pilon__uns LN:1633 skipping SAM header line: @SQ SN:contig_1153_pilon__uns LN:2819 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1155_pilon___frag_3__uns LN:60624 skipping SAM header line: @SQ SN:contig_1159_pilon__uns LN:16135 skipping SAM header line: @SQ SN:contig_117_pilon__uns LN:63296 skipping SAM header line: @SQ SN:contig_1180_pilon__uns LN:31661 skipping SAM header line: @SQ SN:contig_1183_pilon__uns LN:11012 skipping SAM header line: @SQ SN:contig_1184_pilon__uns LN:38297 skipping SAM header line: @SQ SN:contig_1200_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_1203_pilon__uns LN:8323 skipping SAM header line: @SQ SN:contig_1206_pilon__uns LN:102534 skipping SAM header line: @SQ SN:contig_1207_pilon__uns LN:70975 skipping SAM header line: @SQ SN:contig_120_pilon__uns LN:29591 skipping SAM header line: @SQ SN:contig_1213_pilon__uns LN:40960 skipping SAM header line: @SQ SN:contig_1217_pilon__uns LN:8036 skipping SAM header line: @SQ SN:contig_121_pilon__uns LN:23633 skipping SAM header line: @SQ SN:contig_1223_pilon__uns LN:7293 skipping SAM header line: @SQ SN:contig_1225_pilon__uns LN:79347 skipping SAM header line: @SQ SN:contig_1226_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1229_pilon__uns LN:19835 skipping SAM header line: @SQ SN:contig_122_pilon__uns LN:76521 skipping SAM header line: @SQ SN:contig_1232_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_1__uns LN:42810 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1233_pilon___frag_3__uns LN:30586 skipping SAM header line: @SQ SN:contig_1235_pilon__uns LN:24777 skipping SAM header line: @SQ SN:contig_1237_pilon__uns LN:7501 skipping SAM header line: @SQ SN:contig_1239_pilon__uns LN:21394 skipping SAM header line: @SQ SN:contig_1243_pilon__uns LN:13143 skipping SAM header line: @SQ SN:contig_1244_pilon__uns LN:46126 skipping SAM header line: @SQ SN:contig_1251_pilon__uns LN:24697 skipping SAM header line: @SQ SN:contig_1254_pilon__uns LN:138137 skipping SAM header line: @SQ SN:contig_1258_pilon__uns LN:43372 skipping SAM header line: @SQ SN:contig_1260_pilon__uns LN:1040 skipping SAM header line: @SQ SN:contig_126_pilon__uns LN:8704 skipping SAM header line: @SQ SN:contig_1271_pilon__uns LN:19214 skipping SAM header line: @SQ SN:contig_1274_pilon__uns LN:13789 skipping SAM header line: @SQ SN:contig_1276_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_127_pilon__uns LN:58735 skipping SAM header line: @SQ SN:contig_1281_pilon__uns LN:9607 skipping SAM header line: @SQ SN:contig_1283_pilon__uns LN:6790 skipping SAM header line: @SQ SN:contig_128_pilon__uns LN:60259 skipping SAM header line: @SQ SN:contig_1291_pilon__uns LN:51069 skipping SAM header line: @SQ SN:contig_1293_pilon__uns LN:9825 skipping SAM header line: @SQ SN:contig_1301_pilon__uns LN:59436 skipping SAM header line: @SQ SN:contig_1303_pilon__uns LN:140324 skipping SAM header line: @SQ SN:contig_1304_pilon__uns LN:6151 skipping SAM header line: @SQ SN:contig_1307_pilon__uns LN:11511 skipping SAM header line: @SQ SN:contig_1308_pilon__uns LN:5667 skipping SAM header line: @SQ SN:contig_1315_pilon__uns LN:68888 skipping SAM header line: @SQ SN:contig_1318_pilon__uns LN:18219 skipping SAM header line: @SQ SN:contig_1325_pilon__uns LN:4706 skipping SAM header line: @SQ SN:contig_1329_pilon__uns LN:46824 skipping SAM header line: @SQ SN:contig_1330_pilon__uns LN:979 skipping SAM header line: @SQ SN:contig_1338_pilon__uns LN:53862 skipping SAM header line: @SQ SN:contig_1339_pilon__uns LN:4814 skipping SAM header line: @SQ SN:contig_1340_pilon__uns LN:1169 skipping SAM header line: @SQ SN:contig_1342_pilon__uns LN:53712 skipping SAM header line: @SQ SN:contig_1352_pilon__uns LN:6426 skipping SAM header line: @SQ SN:contig_1353_pilon__uns LN:3478 skipping SAM header line: @SQ SN:contig_1367_pilon__uns LN:3758 skipping SAM header line: @SQ SN:contig_1368_pilon__uns LN:6607 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_1__uns LN:38395 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1372_pilon___frag_3__uns LN:129081 skipping SAM header line: @SQ SN:contig_1374_pilon__uns LN:21348 skipping SAM header line: @SQ SN:contig_1386_pilon__uns LN:79771 skipping SAM header line: @SQ SN:contig_1387_pilon__uns LN:7220 skipping SAM header line: @SQ SN:contig_1395_pilon__uns LN:53397 skipping SAM header line: @SQ SN:contig_1398_pilon__uns LN:6798 skipping SAM header line: @SQ SN:contig_1399_pilon__uns LN:93880 skipping SAM header line: @SQ SN:contig_1409_pilon__uns LN:10697 skipping SAM header line: @SQ SN:contig_140_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_1410_pilon__uns LN:9598 skipping SAM header line: @SQ SN:contig_1415_pilon__uns LN:51250 skipping SAM header line: @SQ SN:contig_1419_pilon__uns LN:2382 skipping SAM header line: @SQ SN:contig_1422_pilon__uns LN:45990 skipping SAM header line: @SQ SN:contig_1424_pilon__uns LN:66490 skipping SAM header line: @SQ SN:contig_1426_pilon__uns LN:9478 skipping SAM header line: @SQ SN:contig_1427_pilon__uns LN:9638 skipping SAM header line: @SQ SN:contig_142_pilon__uns LN:108204 skipping SAM header line: @SQ SN:contig_1434_pilon__uns LN:78096 skipping SAM header line: @SQ SN:contig_1438_pilon__uns LN:14730 skipping SAM header line: @SQ SN:contig_1439_pilon__uns LN:119808 skipping SAM header line: @SQ SN:contig_1442_pilon__uns LN:127178 skipping SAM header line: @SQ SN:contig_1444_pilon__uns LN:45820 skipping SAM header line: @SQ SN:contig_1445_pilon__uns LN:66094 skipping SAM header line: @SQ SN:contig_1451_pilon__uns LN:4996 skipping SAM header line: @SQ SN:contig_1452_pilon__uns LN:7524 skipping SAM header line: @SQ SN:contig_1454_pilon__uns LN:2651 skipping SAM header line: @SQ SN:contig_145_pilon__uns LN:51762 skipping SAM header line: @SQ SN:contig_1460_pilon__uns LN:63184 skipping SAM header line: @SQ SN:contig_1461_pilon__uns LN:43545 skipping SAM header line: @SQ SN:contig_146_pilon__uns LN:27627 skipping SAM header line: @SQ SN:contig_1472_pilon__uns LN:29562 skipping SAM header line: @SQ SN:contig_1473_pilon__uns LN:1236 skipping SAM header line: @SQ SN:contig_1484_pilon__uns LN:49420 skipping SAM header line: @SQ SN:contig_1488_pilon__uns LN:17173 skipping SAM header line: @SQ SN:contig_1492_pilon__uns LN:81729 skipping SAM header line: @SQ SN:contig_1493_pilon__uns LN:4152 skipping SAM header line: @SQ SN:contig_1497_pilon__uns LN:129627 skipping SAM header line: @SQ SN:contig_1498_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_1502_pilon__uns LN:129747 skipping SAM header line: @SQ SN:contig_1511_pilon__uns LN:5883 skipping SAM header line: @SQ SN:contig_1512_pilon__uns LN:7280 skipping SAM header line: @SQ SN:contig_1513_pilon__uns LN:48467 skipping SAM header line: @SQ SN:contig_1517_pilon__uns LN:64708 skipping SAM header line: @SQ SN:contig_1522_pilon__uns LN:4286 skipping SAM header line: @SQ SN:contig_1523_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_1525_pilon__uns LN:332504 skipping SAM header line: @SQ SN:contig_1527_pilon__uns LN:66946 skipping SAM header line: @SQ SN:contig_1528_pilon__uns LN:4219 skipping SAM header line: @SQ SN:contig_1530_pilon__uns LN:9690 skipping SAM header line: @SQ SN:contig_1533_pilon__uns LN:268396 skipping SAM header line: @SQ SN:contig_1537_pilon__uns LN:8915 skipping SAM header line: @SQ SN:contig_153_pilon__uns LN:3777 skipping SAM header line: @SQ SN:contig_1540_pilon__uns LN:95588 skipping SAM header line: @SQ SN:contig_1556_pilon__uns LN:192087 skipping SAM header line: @SQ SN:contig_155_pilon__uns LN:4791 skipping SAM header line: @SQ SN:contig_1560_pilon__uns LN:333098 skipping SAM header line: @SQ SN:contig_1566_pilon__uns LN:84111 skipping SAM header line: @SQ SN:contig_1571_pilon__uns LN:14979 skipping SAM header line: @SQ SN:contig_157_pilon__uns LN:49266 skipping SAM header line: @SQ SN:contig_1599_pilon__uns LN:36273 skipping SAM header line: @SQ SN:contig_1600_pilon__uns LN:89161 skipping SAM header line: @SQ SN:contig_1609_pilon__uns LN:5790 skipping SAM header line: @SQ SN:contig_1611_pilon__uns LN:3832 skipping SAM header line: @SQ SN:contig_1616_pilon__uns LN:11738 skipping SAM header line: @SQ SN:contig_1620_pilon__uns LN:7185 skipping SAM header line: @SQ SN:contig_1622_pilon__uns LN:135668 skipping SAM header line: @SQ SN:contig_1628_pilon__uns LN:13962 skipping SAM header line: @SQ SN:contig_1631_pilon__uns LN:41184 skipping SAM header line: @SQ SN:contig_1638_pilon__uns LN:19446 skipping SAM header line: @SQ SN:contig_1643_pilon__uns LN:7932 skipping SAM header line: @SQ SN:contig_1645_pilon__uns LN:5513 skipping SAM header line: @SQ SN:contig_1646_pilon__uns LN:70602 skipping SAM header line: @SQ SN:contig_1650_pilon__uns LN:3556 skipping SAM header line: @SQ SN:contig_1652_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_1655_pilon__uns LN:164032 skipping SAM header line: @SQ SN:contig_1663_pilon__uns LN:75097 skipping SAM header line: @SQ SN:contig_1664_pilon__uns LN:5725 skipping SAM header line: @SQ SN:contig_1668_pilon__uns LN:28516 skipping SAM header line: @SQ SN:contig_166_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1670_pilon__uns LN:42678 skipping SAM header line: @SQ SN:contig_1671_pilon__uns LN:114058 skipping SAM header line: @SQ SN:contig_1672_pilon__uns LN:66804 skipping SAM header line: @SQ SN:contig_1676_pilon__uns LN:47916 skipping SAM header line: @SQ SN:contig_1678_pilon__uns LN:5925 skipping SAM header line: @SQ SN:contig_1680_pilon__uns LN:11792 skipping SAM header line: @SQ SN:contig_1681_pilon__uns LN:10846 skipping SAM header line: @SQ SN:contig_1685_pilon__uns LN:5172 skipping SAM header line: @SQ SN:contig_1689_pilon__uns LN:2288 skipping SAM header line: @SQ SN:contig_1691_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_1697_pilon__uns LN:17619 skipping SAM header line: @SQ SN:contig_1706_pilon__uns LN:82540 skipping SAM header line: @SQ SN:contig_1710_pilon__uns LN:4131 skipping SAM header line: @SQ SN:contig_1714_pilon__uns LN:24313 skipping SAM header line: @SQ SN:contig_1716_pilon__uns LN:54164 skipping SAM header line: @SQ SN:contig_1720_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_1729_pilon__uns LN:52598 skipping SAM header line: @SQ SN:contig_172_pilon__uns LN:91557 skipping SAM header line: @SQ SN:contig_1730_pilon__uns LN:32295 skipping SAM header line: @SQ SN:contig_1733_pilon__uns LN:5020 skipping SAM header line: @SQ SN:contig_1734_pilon__uns LN:1363 skipping SAM header line: @SQ SN:contig_1737_pilon__uns LN:47521 skipping SAM header line: @SQ SN:contig_1739_pilon__uns LN:5871 skipping SAM header line: @SQ SN:contig_1740_pilon__uns LN:5852 skipping SAM header line: @SQ SN:contig_1742_pilon__uns LN:4028 skipping SAM header line: @SQ SN:contig_1743_pilon__uns LN:8595 skipping SAM header line: @SQ SN:contig_1744_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_1745_pilon__uns LN:1561 skipping SAM header line: @SQ SN:contig_174_pilon__uns LN:54007 skipping SAM header line: @SQ SN:contig_1752_pilon__uns LN:10260 skipping SAM header line: @SQ SN:contig_1753_pilon__uns LN:1883 skipping SAM header line: @SQ SN:contig_1755_pilon__uns LN:2286 skipping SAM header line: @SQ SN:contig_1760_pilon__uns LN:5666 skipping SAM header line: @SQ SN:contig_1761_pilon__uns LN:7943 skipping SAM header line: @SQ SN:contig_1768_pilon__uns LN:9947 skipping SAM header line: @SQ SN:contig_176_pilon__uns LN:111249 skipping SAM header line: @SQ SN:contig_1770_pilon__uns LN:2417 skipping SAM header line: @SQ SN:contig_1771_pilon__uns LN:102605 skipping SAM header line: @SQ SN:contig_1772_pilon__uns LN:2922 skipping SAM header line: @SQ SN:contig_1773_pilon__uns LN:6935 skipping SAM header line: @SQ SN:contig_177_pilon__uns LN:55932 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_1__uns LN:45140 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1780_pilon___frag_3__uns LN:50729 skipping SAM header line: @SQ SN:contig_1781_pilon__uns LN:61091 skipping SAM header line: @SQ SN:contig_1787_pilon__uns LN:1062 skipping SAM header line: @SQ SN:contig_1789_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_1__uns LN:33876 skipping SAM header line: @SQ SN:contig_1795_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_1797_pilon__uns LN:175015 skipping SAM header line: @SQ SN:contig_1801_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_180_pilon__uns LN:33499 skipping SAM header line: @SQ SN:contig_1810_pilon__uns LN:153616 skipping SAM header line: @SQ SN:contig_1811_pilon__uns LN:7605 skipping SAM header line: @SQ SN:contig_1815_pilon__uns LN:35821 skipping SAM header line: @SQ SN:contig_1816_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_1819_pilon__uns LN:167132 skipping SAM header line: @SQ SN:contig_1829_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_1830_pilon__uns LN:69382 skipping SAM header line: @SQ SN:contig_1834_pilon__uns LN:55318 skipping SAM header line: @SQ SN:contig_1835_pilon__uns LN:34243 skipping SAM header line: @SQ SN:contig_1839_pilon__uns LN:125770 skipping SAM header line: @SQ SN:contig_1840_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_1846_pilon__uns LN:76239 skipping SAM header line: @SQ SN:contig_1858_pilon__uns LN:7093 skipping SAM header line: @SQ SN:contig_185_pilon__uns LN:275460 skipping SAM header line: @SQ SN:contig_1864_pilon__uns LN:14997 skipping SAM header line: @SQ SN:contig_1868_pilon__uns LN:52567 skipping SAM header line: @SQ SN:contig_1869_pilon__uns LN:5859 skipping SAM header line: @SQ SN:contig_1870_pilon__uns LN:7657 skipping SAM header line: @SQ SN:contig_1875_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_1877_pilon__uns LN:22793 skipping SAM header line: @SQ SN:contig_1878_pilon__uns LN:1286 skipping SAM header line: @SQ SN:contig_1881_pilon__uns LN:121974 skipping SAM header line: @SQ SN:contig_1883_pilon__uns LN:42930 skipping SAM header line: @SQ SN:contig_1888_pilon__uns LN:10580 skipping SAM header line: @SQ SN:contig_1892_pilon__uns LN:196776 skipping SAM header line: @SQ SN:contig_1896_pilon__uns LN:48012 skipping SAM header line: @SQ SN:contig_189_pilon__uns LN:97499 skipping SAM header line: @SQ SN:contig_1902_pilon__uns LN:58128 skipping SAM header line: @SQ SN:contig_1904_pilon__uns LN:48727 skipping SAM header line: @SQ SN:contig_1907_pilon__uns LN:89777 skipping SAM header line: @SQ SN:contig_1908_pilon__uns LN:73277 skipping SAM header line: @SQ SN:contig_190_pilon___frag_1__uns LN:111977 skipping SAM header line: @SQ SN:contig_190_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1916_pilon__uns LN:6751 skipping SAM header line: @SQ SN:contig_1921_pilon__uns LN:53726 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_1__uns LN:77806 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_1923_pilon___frag_3__uns LN:66044 skipping SAM header line: @SQ SN:contig_1924_pilon__uns LN:78227 skipping SAM header line: @SQ SN:contig_1925_pilon__uns LN:6811 skipping SAM header line: @SQ SN:contig_1926_pilon__uns LN:2660 skipping SAM header line: @SQ SN:contig_1929_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_1__uns LN:43524 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_3__uns LN:27001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_4___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_1931_pilon___frag_5__uns LN:83967 skipping SAM header line: @SQ SN:contig_1939_pilon__uns LN:14772 skipping SAM header line: @SQ SN:contig_1940_pilon__uns LN:24723 skipping SAM header line: @SQ SN:contig_1943_pilon__uns LN:9260 skipping SAM header line: @SQ SN:contig_1945_pilon__uns LN:7142 skipping SAM header line: @SQ SN:contig_1962_pilon__uns LN:3945 skipping SAM header line: @SQ SN:contig_1963_pilon__uns LN:99819 skipping SAM header line: @SQ SN:contig_1965_pilon__uns LN:7850 skipping SAM header line: @SQ SN:contig_1969_pilon__uns LN:115934 skipping SAM header line: @SQ SN:contig_1974_pilon__uns LN:17359 skipping SAM header line: @SQ SN:contig_1989_pilon__uns LN:31765 skipping SAM header line: @SQ SN:contig_1991_pilon__uns LN:3288 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_1__uns LN:145360 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_1993_pilon___frag_3__uns LN:64133 skipping SAM header line: @SQ SN:contig_1998_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_199_pilon__uns LN:151342 skipping SAM header line: @SQ SN:contig_1_pilon__uns LN:81548 skipping SAM header line: @SQ SN:contig_2001_pilon__uns LN:10224 skipping SAM header line: @SQ SN:contig_2002_pilon__uns LN:30357 skipping SAM header line: @SQ SN:contig_2010_pilon__uns LN:4207 skipping SAM header line: @SQ SN:contig_2014_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_203_pilon__uns LN:74569 skipping SAM header line: @SQ SN:contig_2042_pilon__uns LN:65692 skipping SAM header line: @SQ SN:contig_2049_pilon__uns LN:1954 skipping SAM header line: @SQ SN:contig_204_pilon__uns LN:196437 skipping SAM header line: @SQ SN:contig_2057_pilon__uns LN:331809 skipping SAM header line: @SQ SN:contig_2060_pilon__uns LN:38054 skipping SAM header line: @SQ SN:contig_2068_pilon__uns LN:933 skipping SAM header line: @SQ SN:contig_2069_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_206_pilon__uns LN:12803 skipping SAM header line: @SQ SN:contig_2078_pilon__uns LN:309 skipping SAM header line: @SQ SN:contig_2087_pilon__uns LN:14648 skipping SAM header line: @SQ SN:contig_2093_pilon__uns LN:555 skipping SAM header line: @SQ SN:contig_2098_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_2100_pilon__uns LN:12962 skipping SAM header line: @SQ SN:contig_210_pilon__uns LN:104705 skipping SAM header line: @SQ SN:contig_2111_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_2112_pilon__uns LN:19422 skipping SAM header line: @SQ SN:contig_211_pilon___frag_1__uns LN:63350 skipping SAM header line: @SQ SN:contig_211_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_211_pilon___frag_3__uns LN:14643 skipping SAM header line: @SQ SN:contig_2122_pilon__uns LN:4263 skipping SAM header line: @SQ SN:contig_2126_pilon__uns LN:905 skipping SAM header line: @SQ SN:contig_2131_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_2139_pilon__uns LN:562 skipping SAM header line: @SQ SN:contig_2140_pilon__uns LN:31337 skipping SAM header line: @SQ SN:contig_2141_pilon__uns LN:607 skipping SAM header line: @SQ SN:contig_2143_pilon__uns LN:33651 skipping SAM header line: @SQ SN:contig_2149_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_2153_pilon__uns LN:14315 skipping SAM header line: @SQ SN:contig_2164_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_2165_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2167_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_2168_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2176_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_217_pilon__uns LN:59632 skipping SAM header line: @SQ SN:contig_2180_pilon__uns LN:53284 skipping SAM header line: @SQ SN:contig_2182_pilon__uns LN:12085 skipping SAM header line: @SQ SN:contig_2183_pilon__uns LN:111072 skipping SAM header line: @SQ SN:contig_218_pilon__uns LN:51761 skipping SAM header line: @SQ SN:contig_2192_pilon__uns LN:14220 skipping SAM header line: @SQ SN:contig_2194_pilon__uns LN:15147 skipping SAM header line: @SQ SN:contig_2198_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_219_pilon__uns LN:100718 skipping SAM header line: @SQ SN:contig_2200_pilon__uns LN:620 skipping SAM header line: @SQ SN:contig_2201_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_2207_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_2209_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_220_pilon___frag_1__uns LN:105323 skipping SAM header line: @SQ SN:contig_220_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_220_pilon___frag_3__uns LN:57273 skipping SAM header line: @SQ SN:contig_2213_pilon__uns LN:3192 skipping SAM header line: @SQ SN:contig_2215_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_2216_pilon__uns LN:971 skipping SAM header line: @SQ SN:contig_2236_pilon__uns LN:641 skipping SAM header line: @SQ SN:contig_2238_pilon__uns LN:621 skipping SAM header line: @SQ SN:contig_223_pilon__uns LN:18750 skipping SAM header line: @SQ SN:contig_2240_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2242_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_2245_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_2247_pilon__uns LN:3006 skipping SAM header line: @SQ SN:contig_2248_pilon__uns LN:10338 skipping SAM header line: @SQ SN:contig_2249_pilon__uns LN:19158 skipping SAM header line: @SQ SN:contig_2250_pilon__uns LN:1328 skipping SAM header line: @SQ SN:contig_2251_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_2253_pilon__uns LN:2210 skipping SAM header line: @SQ SN:contig_2254_pilon__uns LN:83743 skipping SAM header line: @SQ SN:contig_2255_pilon__uns LN:96187 skipping SAM header line: @SQ SN:contig_2259_pilon__uns LN:4316 skipping SAM header line: @SQ SN:contig_225_pilon__uns LN:2653 skipping SAM header line: @SQ SN:contig_2260_pilon__uns LN:2598 skipping SAM header line: @SQ SN:contig_2262_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_2265_pilon__uns LN:1986 skipping SAM header line: @SQ SN:contig_2271_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_2274_pilon__uns LN:94906 skipping SAM header line: @SQ SN:contig_2278_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_2280_pilon__uns LN:36570 skipping SAM header line: @SQ SN:contig_2281_pilon__uns LN:1492 skipping SAM header line: @SQ SN:contig_2284_pilon__uns LN:1520 skipping SAM header line: @SQ SN:contig_2286_pilon__uns LN:236878 skipping SAM header line: @SQ SN:contig_2288_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_2289_pilon__uns LN:3280 skipping SAM header line: @SQ SN:contig_2290_pilon__uns LN:2724 skipping SAM header line: @SQ SN:contig_2291_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2292_pilon__uns LN:2233 skipping SAM header line: @SQ SN:contig_2294_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_2295_pilon__uns LN:73788 skipping SAM header line: @SQ SN:contig_2296_pilon__uns LN:1506 skipping SAM header line: @SQ SN:contig_2297_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_2299_pilon__uns LN:36259 skipping SAM header line: @SQ SN:contig_2302_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2304_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_2306_pilon__uns LN:2728 skipping SAM header line: @SQ SN:contig_2309_pilon__uns LN:219 skipping SAM header line: @SQ SN:contig_2311_pilon__uns LN:2500 skipping SAM header line: @SQ SN:contig_2312_pilon__uns LN:1505 skipping SAM header line: @SQ SN:contig_2313_pilon__uns LN:12568 skipping SAM header line: @SQ SN:contig_2316_pilon__uns LN:3744 skipping SAM header line: @SQ SN:contig_2317_pilon__uns LN:1549 skipping SAM header line: @SQ SN:contig_2318_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2320_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_2321_pilon__uns LN:2166 skipping SAM header line: @SQ SN:contig_2322_pilon__uns LN:145225 skipping SAM header line: @SQ SN:contig_2325_pilon__uns LN:703 skipping SAM header line: @SQ SN:contig_2326_pilon__uns LN:7523 skipping SAM header line: @SQ SN:contig_2333_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2334_pilon__uns LN:1491 skipping SAM header line: @SQ SN:contig_2336_pilon__uns LN:1687 skipping SAM header line: @SQ SN:contig_2337_pilon__uns LN:2645 skipping SAM header line: @SQ SN:contig_2339_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_233_pilon__uns LN:80815 skipping SAM header line: @SQ SN:contig_2341_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_2344_pilon__uns LN:2017 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_1__uns LN:373001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_2___debris__uns LN:25001 skipping SAM header line: @SQ SN:contig_2345_pilon___frag_3__uns LN:285820 skipping SAM header line: @SQ SN:contig_2347_pilon__uns LN:125671 skipping SAM header line: @SQ SN:contig_234_pilon__uns LN:4757 skipping SAM header line: @SQ SN:contig_2354_pilon__uns LN:573 skipping SAM header line: @SQ SN:contig_2355_pilon__uns LN:3973 skipping SAM header line: @SQ SN:contig_2357_pilon__uns LN:4960 skipping SAM header line: @SQ SN:contig_2358_pilon__uns LN:975 skipping SAM header line: @SQ SN:contig_235_pilon__uns LN:7871 skipping SAM header line: @SQ SN:contig_2360_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2362_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2363_pilon__uns LN:1746 skipping SAM header line: @SQ SN:contig_2364_pilon__uns LN:3331 skipping SAM header line: @SQ SN:contig_2365_pilon__uns LN:2077 skipping SAM header line: @SQ SN:contig_2367_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_2368_pilon__uns LN:395 skipping SAM header line: @SQ SN:contig_2369_pilon__uns LN:3792 skipping SAM header line: @SQ SN:contig_236_pilon__uns LN:36222 skipping SAM header line: @SQ SN:contig_2370_pilon__uns LN:1473 skipping SAM header line: @SQ SN:contig_2376_pilon__uns LN:28699 skipping SAM header line: @SQ SN:contig_2377_pilon__uns LN:1055 skipping SAM header line: @SQ SN:contig_2378_pilon__uns LN:14061 skipping SAM header line: @SQ SN:contig_2388_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_238_pilon__uns LN:83364 skipping SAM header line: @SQ SN:contig_2390_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_2391_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_2392_pilon__uns LN:26634 skipping SAM header line: @SQ SN:contig_2399_pilon__uns LN:2663 skipping SAM header line: @SQ SN:contig_239_pilon__uns LN:16492 skipping SAM header line: @SQ SN:contig_23_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2401_pilon__uns LN:653 skipping SAM header line: @SQ SN:contig_2402_pilon__uns LN:322 skipping SAM header line: @SQ SN:contig_2405_pilon__uns LN:712 skipping SAM header line: @SQ SN:contig_2409_pilon__uns LN:1319 skipping SAM header line: @SQ SN:contig_2411_pilon__uns LN:1073 skipping SAM header line: @SQ SN:contig_2416_pilon__uns LN:1050 skipping SAM header line: @SQ SN:contig_2417_pilon__uns LN:826 skipping SAM header line: @SQ SN:contig_2418_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_2421_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2423_pilon__uns LN:415 skipping SAM header line: @SQ SN:contig_2427_pilon__uns LN:1624 skipping SAM header line: @SQ SN:contig_2430_pilon__uns LN:60849 skipping SAM header line: @SQ SN:contig_2433_pilon__uns LN:1823 skipping SAM header line: @SQ SN:contig_2434_pilon__uns LN:7012 skipping SAM header line: @SQ SN:contig_2435_pilon__uns LN:9205 skipping SAM header line: @SQ SN:contig_2439_pilon__uns LN:12539 skipping SAM header line: @SQ SN:contig_2440_pilon__uns LN:7010 skipping SAM header line: @SQ SN:contig_2443_pilon__uns LN:81609 skipping SAM header line: @SQ SN:contig_2444_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_2446_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_2449_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_244_pilon__uns LN:57586 skipping SAM header line: @SQ SN:contig_2455_pilon__uns LN:1253 skipping SAM header line: @SQ SN:contig_2456_pilon__uns LN:31799 skipping SAM header line: @SQ SN:contig_2457_pilon__uns LN:1260 skipping SAM header line: @SQ SN:contig_2459_pilon__uns LN:531 skipping SAM header line: @SQ SN:contig_2462_pilon__uns LN:2784 skipping SAM header line: @SQ SN:contig_2463_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_2466_pilon__uns LN:2353 skipping SAM header line: @SQ SN:contig_2469_pilon__uns LN:2167 skipping SAM header line: @SQ SN:contig_2471_pilon__uns LN:3449 skipping SAM header line: @SQ SN:contig_2473_pilon__uns LN:6369 skipping SAM header line: @SQ SN:contig_2475_pilon__uns LN:30412 skipping SAM header line: @SQ SN:contig_2476_pilon__uns LN:540 skipping SAM header line: @SQ SN:contig_2477_pilon__uns LN:1465 skipping SAM header line: @SQ SN:contig_247_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2480_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_2484_pilon__uns LN:1677 skipping SAM header line: @SQ SN:contig_2486_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2487_pilon__uns LN:5754 skipping SAM header line: @SQ SN:contig_248_pilon__uns LN:159208 skipping SAM header line: @SQ SN:contig_2490_pilon__uns LN:438 skipping SAM header line: @SQ SN:contig_2491_pilon__uns LN:911 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_1__uns LN:10126 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_2492_pilon___frag_3__uns LN:154682 skipping SAM header line: @SQ SN:contig_2494_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_2497_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2499_pilon__uns LN:1368 skipping SAM header line: @SQ SN:contig_2500_pilon__uns LN:727 skipping SAM header line: @SQ SN:contig_2503_pilon__uns LN:177249 skipping SAM header line: @SQ SN:contig_2507_pilon__uns LN:19350 skipping SAM header line: @SQ SN:contig_2509_pilon__uns LN:43484 skipping SAM header line: @SQ SN:contig_2510_pilon__uns LN:22480 skipping SAM header line: @SQ SN:contig_2512_pilon__uns LN:79056 skipping SAM header line: @SQ SN:contig_2513_pilon__uns LN:763 skipping SAM header line: @SQ SN:contig_2515_pilon__uns LN:38993 skipping SAM header line: @SQ SN:contig_2517_pilon__uns LN:1251 skipping SAM header line: @SQ SN:contig_2518_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_2519_pilon__uns LN:110862 skipping SAM header line: @SQ SN:contig_251_pilon__uns LN:15036 skipping SAM header line: @SQ SN:contig_2520_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_2525_pilon__uns LN:4277 skipping SAM header line: @SQ SN:contig_2527_pilon__uns LN:62155 skipping SAM header line: @SQ SN:contig_252_pilon__uns LN:74166 skipping SAM header line: @SQ SN:contig_2533_pilon__uns LN:36092 skipping SAM header line: @SQ SN:contig_2535_pilon__uns LN:2095 skipping SAM header line: @SQ SN:contig_2536_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_2539_pilon__uns LN:261 skipping SAM header line: @SQ SN:contig_2540_pilon__uns LN:770 skipping SAM header line: @SQ SN:contig_2544_pilon__uns LN:14201 skipping SAM header line: @SQ SN:contig_2549_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2550_pilon__uns LN:2710 skipping SAM header line: @SQ SN:contig_2551_pilon__uns LN:1009 skipping SAM header line: @SQ SN:contig_2552_pilon__uns LN:52219 skipping SAM header line: @SQ SN:contig_2555_pilon__uns LN:665 skipping SAM header line: @SQ SN:contig_2560_pilon__uns LN:18273 skipping SAM header line: @SQ SN:contig_2563_pilon__uns LN:9393 skipping SAM header line: @SQ SN:contig_2564_pilon__uns LN:2005 skipping SAM header line: @SQ SN:contig_2565_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2566_pilon__uns LN:225 skipping SAM header line: @SQ SN:contig_2569_pilon__uns LN:1094 skipping SAM header line: @SQ SN:contig_256_pilon__uns LN:38364 skipping SAM header line: @SQ SN:contig_2570_pilon__uns LN:8061 skipping SAM header line: @SQ SN:contig_2572_pilon__uns LN:3376 skipping SAM header line: @SQ SN:contig_2574_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2587_pilon__uns LN:7725 skipping SAM header line: @SQ SN:contig_2588_pilon__uns LN:652 skipping SAM header line: @SQ SN:contig_2594_pilon__uns LN:9117 skipping SAM header line: @SQ SN:contig_2595_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2596_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_2598_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_2600_pilon__uns LN:25232 skipping SAM header line: @SQ SN:contig_2607_pilon__uns LN:51272 skipping SAM header line: @SQ SN:contig_2608_pilon__uns LN:2986 skipping SAM header line: @SQ SN:contig_2609_pilon__uns LN:25503 skipping SAM header line: @SQ SN:contig_260_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_2610_pilon__uns LN:18784 skipping SAM header line: @SQ SN:contig_2612_pilon__uns LN:63149 skipping SAM header line: @SQ SN:contig_2613_pilon__uns LN:4485 skipping SAM header line: @SQ SN:contig_2614_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2617_pilon__uns LN:848 skipping SAM header line: @SQ SN:contig_2618_pilon__uns LN:855 skipping SAM header line: @SQ SN:contig_2619_pilon__uns LN:4174 skipping SAM header line: @SQ SN:contig_2620_pilon__uns LN:1052 skipping SAM header line: @SQ SN:contig_2627_pilon__uns LN:82536 skipping SAM header line: @SQ SN:contig_2628_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_1__uns LN:65338 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2629_pilon___frag_3__uns LN:50921 skipping SAM header line: @SQ SN:contig_262_pilon__uns LN:1589 skipping SAM header line: @SQ SN:contig_2630_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2637_pilon__uns LN:1206 skipping SAM header line: @SQ SN:contig_2639_pilon__uns LN:17570 skipping SAM header line: @SQ SN:contig_2641_pilon__uns LN:505 skipping SAM header line: @SQ SN:contig_2642_pilon__uns LN:265261 skipping SAM header line: @SQ SN:contig_2643_pilon__uns LN:70227 skipping SAM header line: @SQ SN:contig_2646_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_2650_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_2651_pilon__uns LN:1228 skipping SAM header line: @SQ SN:contig_2653_pilon__uns LN:728 skipping SAM header line: @SQ SN:contig_2654_pilon__uns LN:3416 skipping SAM header line: @SQ SN:contig_2656_pilon__uns LN:1327 skipping SAM header line: @SQ SN:contig_2657_pilon__uns LN:205 skipping SAM header line: @SQ SN:contig_2663_pilon__uns LN:1130 skipping SAM header line: @SQ SN:contig_2664_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_2666_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_2667_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_2669_pilon__uns LN:103544 skipping SAM header line: @SQ SN:contig_266_pilon__uns LN:26708 skipping SAM header line: @SQ SN:contig_2670_pilon__uns LN:39150 skipping SAM header line: @SQ SN:contig_2671_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_2672_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2676_pilon__uns LN:1309 skipping SAM header line: @SQ SN:contig_2677_pilon__uns LN:2526 skipping SAM header line: @SQ SN:contig_2678_pilon__uns LN:459 skipping SAM header line: @SQ SN:contig_2679_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_2683_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_2687_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_268_pilon__uns LN:147305 skipping SAM header line: @SQ SN:contig_2694_pilon__uns LN:2395 skipping SAM header line: @SQ SN:contig_2695_pilon__uns LN:1546 skipping SAM header line: @SQ SN:contig_2699_pilon__uns LN:226254 skipping SAM header line: @SQ SN:contig_269_pilon__uns LN:60078 skipping SAM header line: @SQ SN:contig_2702_pilon__uns LN:1751 skipping SAM header line: @SQ SN:contig_2706_pilon__uns LN:1234 skipping SAM header line: @SQ SN:contig_2708_pilon__uns LN:524 skipping SAM header line: @SQ SN:contig_2710_pilon__uns LN:23943 skipping SAM header line: @SQ SN:contig_2714_pilon__uns LN:574 skipping SAM header line: @SQ SN:contig_2717_pilon__uns LN:2540 skipping SAM header line: @SQ SN:contig_2718_pilon__uns LN:48717 skipping SAM header line: @SQ SN:contig_2719_pilon__uns LN:420 skipping SAM header line: @SQ SN:contig_2722_pilon__uns LN:4397 skipping SAM header line: @SQ SN:contig_2724_pilon__uns LN:1666 skipping SAM header line: @SQ SN:contig_2725_pilon__uns LN:24535 skipping SAM header line: @SQ SN:contig_2727_pilon__uns LN:2113 skipping SAM header line: @SQ SN:contig_2730_pilon__uns LN:62651 skipping SAM header line: @SQ SN:contig_2732_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_2735_pilon__uns LN:17374 skipping SAM header line: @SQ SN:contig_2736_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_2738_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_2740_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2745_pilon__uns LN:1908 skipping SAM header line: @SQ SN:contig_2747_pilon__uns LN:1184 skipping SAM header line: @SQ SN:contig_2750_pilon__uns LN:474 skipping SAM header line: @SQ SN:contig_2751_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_2753_pilon__uns LN:2549 skipping SAM header line: @SQ SN:contig_2758_pilon__uns LN:977 skipping SAM header line: @SQ SN:contig_2760_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_2763_pilon__uns LN:111733 skipping SAM header line: @SQ SN:contig_2765_pilon__uns LN:1704 skipping SAM header line: @SQ SN:contig_2766_pilon__uns LN:785 skipping SAM header line: @SQ SN:contig_2767_pilon__uns LN:9244 skipping SAM header line: @SQ SN:contig_2771_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_2773_pilon__uns LN:1128 skipping SAM header line: @SQ SN:contig_2775_pilon__uns LN:2933 skipping SAM header line: @SQ SN:contig_2777_pilon__uns LN:1493 skipping SAM header line: @SQ SN:contig_2778_pilon__uns LN:1109 skipping SAM header line: @SQ SN:contig_2779_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_2782_pilon__uns LN:2365 skipping SAM header line: @SQ SN:contig_2787_pilon__uns LN:61885 skipping SAM header line: @SQ SN:contig_2788_pilon__uns LN:466 skipping SAM header line: @SQ SN:contig_2791_pilon__uns LN:12555 skipping SAM header line: @SQ SN:contig_2792_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_2811_pilon__uns LN:1204 skipping SAM header line: @SQ SN:contig_2815_pilon__uns LN:1441 skipping SAM header line: @SQ SN:contig_2816_pilon__uns LN:23180 skipping SAM header line: @SQ SN:contig_2817_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_2819_pilon__uns LN:2116 skipping SAM header line: @SQ SN:contig_2820_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_2822_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2823_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_2824_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_2828_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_2829_pilon__uns LN:3830 skipping SAM header line: @SQ SN:contig_282_pilon__uns LN:114431 skipping SAM header line: @SQ SN:contig_2830_pilon__uns LN:4737 skipping SAM header line: @SQ SN:contig_2832_pilon__uns LN:1513 skipping SAM header line: @SQ SN:contig_2834_pilon__uns LN:1295 skipping SAM header line: @SQ SN:contig_2835_pilon__uns LN:2015 skipping SAM header line: @SQ SN:contig_2836_pilon__uns LN:1051 skipping SAM header line: @SQ SN:contig_2838_pilon__uns LN:3820 skipping SAM header line: @SQ SN:contig_2840_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2841_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_2846_pilon__uns LN:12621 skipping SAM header line: @SQ SN:contig_2851_pilon__uns LN:478 skipping SAM header line: @SQ SN:contig_2856_pilon__uns LN:982 skipping SAM header line: @SQ SN:contig_2857_pilon__uns LN:874 skipping SAM header line: @SQ SN:contig_2858_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_2859_pilon__uns LN:548 skipping SAM header line: @SQ SN:contig_2861_pilon__uns LN:1349 skipping SAM header line: @SQ SN:contig_2865_pilon__uns LN:2328 skipping SAM header line: @SQ SN:contig_2867_pilon__uns LN:3865 skipping SAM header line: @SQ SN:contig_2872_pilon__uns LN:3672 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_1__uns LN:101668 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_2874_pilon___frag_3__uns LN:33619 skipping SAM header line: @SQ SN:contig_2875_pilon__uns LN:10005 skipping SAM header line: @SQ SN:contig_2878_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_2879_pilon__uns LN:2631 skipping SAM header line: @SQ SN:contig_2881_pilon__uns LN:29620 skipping SAM header line: @SQ SN:contig_2882_pilon__uns LN:9022 skipping SAM header line: @SQ SN:contig_2883_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_2884_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_2885_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_2886_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_2889_pilon__uns LN:5611 skipping SAM header line: @SQ SN:contig_288_pilon__uns LN:31635 skipping SAM header line: @SQ SN:contig_2894_pilon__uns LN:5284 skipping SAM header line: @SQ SN:contig_2895_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_2896_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_289_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_3__uns LN:43001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_5__uns LN:28001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_6___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_289_pilon___frag_7__uns LN:115135 skipping SAM header line: @SQ SN:contig_2900_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_2901_pilon__uns LN:427 skipping SAM header line: @SQ SN:contig_2905_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_2906_pilon__uns LN:557 skipping SAM header line: @SQ SN:contig_2909_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_2911_pilon__uns LN:1067 skipping SAM header line: @SQ SN:contig_2920_pilon__uns LN:2449 skipping SAM header line: @SQ SN:contig_2921_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_2922_pilon__uns LN:1042 skipping SAM header line: @SQ SN:contig_2923_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_2924_pilon__uns LN:1221 skipping SAM header line: @SQ SN:contig_2926_pilon__uns LN:687 skipping SAM header line: @SQ SN:contig_2927_pilon__uns LN:12971 skipping SAM header line: @SQ SN:contig_2928_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_2929_pilon__uns LN:62462 skipping SAM header line: @SQ SN:contig_2932_pilon__uns LN:7023 skipping SAM header line: @SQ SN:contig_2934_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_2935_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_2936_pilon__uns LN:657 skipping SAM header line: @SQ SN:contig_2940_pilon__uns LN:3555 skipping SAM header line: @SQ SN:contig_2941_pilon__uns LN:526 skipping SAM header line: @SQ SN:contig_2942_pilon__uns LN:5609 skipping SAM header line: @SQ SN:contig_2943_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_2946_pilon__uns LN:1412 skipping SAM header line: @SQ SN:contig_2948_pilon__uns LN:2064 skipping SAM header line: @SQ SN:contig_2949_pilon__uns LN:45798 skipping SAM header line: @SQ SN:contig_294_pilon__uns LN:4853 skipping SAM header line: @SQ SN:contig_2950_pilon__uns LN:202324 skipping SAM header line: @SQ SN:contig_2951_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_2952_pilon__uns LN:75605 skipping SAM header line: @SQ SN:contig_2953_pilon__uns LN:1075 skipping SAM header line: @SQ SN:contig_2954_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_2955_pilon__uns LN:816 skipping SAM header line: @SQ SN:contig_2960_pilon__uns LN:1118 skipping SAM header line: @SQ SN:contig_2962_pilon__uns LN:4637 skipping SAM header line: @SQ SN:contig_2965_pilon__uns LN:148305 skipping SAM header line: @SQ SN:contig_2966_pilon__uns LN:543 skipping SAM header line: @SQ SN:contig_2967_pilon__uns LN:5959 skipping SAM header line: @SQ SN:contig_2968_pilon__uns LN:3698 skipping SAM header line: @SQ SN:contig_2969_pilon__uns LN:920 skipping SAM header line: @SQ SN:contig_2970_pilon__uns LN:358 skipping SAM header line: @SQ SN:contig_2973_pilon__uns LN:258 skipping SAM header line: @SQ SN:contig_2976_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_2978_pilon__uns LN:644 skipping SAM header line: @SQ SN:contig_2980_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_2981_pilon__uns LN:213477 skipping SAM header line: @SQ SN:contig_2983_pilon__uns LN:454 skipping SAM header line: @SQ SN:contig_2984_pilon__uns LN:766 skipping SAM header line: @SQ SN:contig_2987_pilon__uns LN:2463 skipping SAM header line: @SQ SN:contig_2994_pilon__uns LN:44412 skipping SAM header line: @SQ SN:contig_2997_pilon__uns LN:787 skipping SAM header line: @SQ SN:contig_2999_pilon__uns LN:2316 skipping SAM header line: @SQ SN:contig_3000_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_3001_pilon__uns LN:100813 skipping SAM header line: @SQ SN:contig_3002_pilon__uns LN:749 skipping SAM header line: @SQ SN:contig_3003_pilon__uns LN:553 skipping SAM header line: @SQ SN:contig_3004_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_3009_pilon__uns LN:29579 skipping SAM header line: @SQ SN:contig_3010_pilon__uns LN:521 skipping SAM header line: @SQ SN:contig_3013_pilon__uns LN:283 skipping SAM header line: @SQ SN:contig_3015_pilon__uns LN:919 skipping SAM header line: @SQ SN:contig_3017_pilon__uns LN:4628 skipping SAM header line: @SQ SN:contig_3019_pilon__uns LN:23441 skipping SAM header line: @SQ SN:contig_3020_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3022_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_3024_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_3025_pilon__uns LN:1923 skipping SAM header line: @SQ SN:contig_3026_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3027_pilon__uns LN:1140 skipping SAM header line: @SQ SN:contig_3028_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_1__uns LN:69854 skipping SAM header line: @SQ SN:contig_3032_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3036_pilon__uns LN:1233 skipping SAM header line: @SQ SN:contig_303_pilon__uns LN:95309 skipping SAM header line: @SQ SN:contig_3040_pilon__uns LN:12459 skipping SAM header line: @SQ SN:contig_3041_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3043_pilon__uns LN:1171 skipping SAM header line: @SQ SN:contig_3044_pilon__uns LN:9894 skipping SAM header line: @SQ SN:contig_3047_pilon__uns LN:699 skipping SAM header line: @SQ SN:contig_3055_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_3058_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_3061_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_3064_pilon__uns LN:3245 skipping SAM header line: @SQ SN:contig_3068_pilon__uns LN:1290 skipping SAM header line: @SQ SN:contig_3070_pilon__uns LN:4062 skipping SAM header line: @SQ SN:contig_3072_pilon__uns LN:1632 skipping SAM header line: @SQ SN:contig_3073_pilon__uns LN:789 skipping SAM header line: @SQ SN:contig_3074_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3079_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3086_pilon__uns LN:9591 skipping SAM header line: @SQ SN:contig_3087_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_3088_pilon__uns LN:95412 skipping SAM header line: @SQ SN:contig_3090_pilon__uns LN:29503 skipping SAM header line: @SQ SN:contig_3093_pilon__uns LN:2620 skipping SAM header line: @SQ SN:contig_3102_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_3103_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_3104_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_3106_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_310_pilon__uns LN:3958 skipping SAM header line: @SQ SN:contig_3112_pilon__uns LN:1008 skipping SAM header line: @SQ SN:contig_3113_pilon__uns LN:802 skipping SAM header line: @SQ SN:contig_3120_pilon__uns LN:234133 skipping SAM header line: @SQ SN:contig_3126_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3127_pilon__uns LN:11783 skipping SAM header line: @SQ SN:contig_312_pilon__uns LN:11570 skipping SAM header line: @SQ SN:contig_3130_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3132_pilon__uns LN:12853 skipping SAM header line: @SQ SN:contig_3133_pilon__uns LN:2642 skipping SAM header line: @SQ SN:contig_3138_pilon__uns LN:3637 skipping SAM header line: @SQ SN:contig_3141_pilon__uns LN:700 skipping SAM header line: @SQ SN:contig_3142_pilon__uns LN:1053 skipping SAM header line: @SQ SN:contig_3144_pilon__uns LN:1077 skipping SAM header line: @SQ SN:contig_3146_pilon__uns LN:514 skipping SAM header line: @SQ SN:contig_3147_pilon__uns LN:3536 skipping SAM header line: @SQ SN:contig_3150_pilon__uns LN:22745 skipping SAM header line: @SQ SN:contig_3151_pilon__uns LN:753 skipping SAM header line: @SQ SN:contig_3153_pilon__uns LN:561 skipping SAM header line: @SQ SN:contig_3155_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3156_pilon__uns LN:23398 skipping SAM header line: @SQ SN:contig_315_pilon__uns LN:131916 skipping SAM header line: @SQ SN:contig_3160_pilon__uns LN:5210 skipping SAM header line: @SQ SN:contig_3161_pilon__uns LN:605 skipping SAM header line: @SQ SN:contig_3163_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_3166_pilon__uns LN:1335 skipping SAM header line: @SQ SN:contig_3169_pilon__uns LN:5058 skipping SAM header line: @SQ SN:contig_3172_pilon__uns LN:637 skipping SAM header line: @SQ SN:contig_3173_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_3177_pilon__uns LN:589 skipping SAM header line: @SQ SN:contig_3180_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_3181_pilon__uns LN:3343 skipping SAM header line: @SQ SN:contig_3185_pilon__uns LN:2627 skipping SAM header line: @SQ SN:contig_3186_pilon__uns LN:25243 skipping SAM header line: @SQ SN:contig_3190_pilon__uns LN:890 skipping SAM header line: @SQ SN:contig_3192_pilon__uns LN:1147 skipping SAM header line: @SQ SN:contig_3194_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_3197_pilon__uns LN:18566 skipping SAM header line: @SQ SN:contig_3199_pilon__uns LN:4327 skipping SAM header line: @SQ SN:contig_31_pilon__uns LN:54961 skipping SAM header line: @SQ SN:contig_3200_pilon__uns LN:2159 skipping SAM header line: @SQ SN:contig_3201_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3203_pilon__uns LN:27609 skipping SAM header line: @SQ SN:contig_3204_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3209_pilon__uns LN:1162 skipping SAM header line: @SQ SN:contig_320_pilon__uns LN:3760 skipping SAM header line: @SQ SN:contig_3211_pilon__uns LN:12527 skipping SAM header line: @SQ SN:contig_3212_pilon__uns LN:4732 skipping SAM header line: @SQ SN:contig_3213_pilon__uns LN:632 skipping SAM header line: @SQ SN:contig_3220_pilon__uns LN:2847 skipping SAM header line: @SQ SN:contig_3223_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3224_pilon__uns LN:161790 skipping SAM header line: @SQ SN:contig_3225_pilon__uns LN:3471 skipping SAM header line: @SQ SN:contig_3228_pilon__uns LN:11303 skipping SAM header line: @SQ SN:contig_3230_pilon__uns LN:1674 skipping SAM header line: @SQ SN:contig_3231_pilon__uns LN:1302 skipping SAM header line: @SQ SN:contig_3232_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_3233_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_3235_pilon__uns LN:1379 skipping SAM header line: @SQ SN:contig_3236_pilon__uns LN:623 skipping SAM header line: @SQ SN:contig_3237_pilon__uns LN:102454 skipping SAM header line: @SQ SN:contig_3243_pilon__uns LN:3470 skipping SAM header line: @SQ SN:contig_3244_pilon__uns LN:810 skipping SAM header line: @SQ SN:contig_3249_pilon__uns LN:594 skipping SAM header line: @SQ SN:contig_3251_pilon__uns LN:974 skipping SAM header line: @SQ SN:contig_3252_pilon__uns LN:22315 skipping SAM header line: @SQ SN:contig_3254_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_3257_pilon__uns LN:6843 skipping SAM header line: @SQ SN:contig_3258_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3259_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3260_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_3261_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3262_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_3266_pilon__uns LN:4150 skipping SAM header line: @SQ SN:contig_3269_pilon__uns LN:1844 skipping SAM header line: @SQ SN:contig_327_pilon__uns LN:298262 skipping SAM header line: @SQ SN:contig_3284_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_3285_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3295_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3298_pilon__uns LN:1724 skipping SAM header line: @SQ SN:contig_32_pilon___frag_1__uns LN:22116 skipping SAM header line: @SQ SN:contig_32_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_3301_pilon__uns LN:31796 skipping SAM header line: @SQ SN:contig_3302_pilon__uns LN:1657 skipping SAM header line: @SQ SN:contig_3305_pilon__uns LN:772 skipping SAM header line: @SQ SN:contig_3306_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_3307_pilon__uns LN:668 skipping SAM header line: @SQ SN:contig_3311_pilon__uns LN:1660 skipping SAM header line: @SQ SN:contig_3317_pilon__uns LN:729 skipping SAM header line: @SQ SN:contig_3318_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_3319_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_331_pilon__uns LN:2604 skipping SAM header line: @SQ SN:contig_3320_pilon__uns LN:111711 skipping SAM header line: @SQ SN:contig_3321_pilon__uns LN:251448 skipping SAM header line: @SQ SN:contig_3323_pilon__uns LN:912 skipping SAM header line: @SQ SN:contig_3326_pilon__uns LN:1756 skipping SAM header line: @SQ SN:contig_3327_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_3331_pilon__uns LN:3077 skipping SAM header line: @SQ SN:contig_3339_pilon__uns LN:2823 skipping SAM header line: @SQ SN:contig_3342_pilon__uns LN:2090 skipping SAM header line: @SQ SN:contig_3343_pilon__uns LN:18928 skipping SAM header line: @SQ SN:contig_3344_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_3346_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3347_pilon__uns LN:2314 skipping SAM header line: @SQ SN:contig_3348_pilon__uns LN:1352 skipping SAM header line: @SQ SN:contig_334_pilon__uns LN:15492 skipping SAM header line: @SQ SN:contig_3351_pilon__uns LN:16074 skipping SAM header line: @SQ SN:contig_3352_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_3353_pilon__uns LN:1112 skipping SAM header line: @SQ SN:contig_3354_pilon__uns LN:3305 skipping SAM header line: @SQ SN:contig_3355_pilon__uns LN:4077 skipping SAM header line: @SQ SN:contig_3358_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_3360_pilon__uns LN:590 skipping SAM header line: @SQ SN:contig_3361_pilon__uns LN:5598 skipping SAM header line: @SQ SN:contig_3363_pilon__uns LN:469 skipping SAM header line: @SQ SN:contig_3367_pilon__uns LN:1065 skipping SAM header line: @SQ SN:contig_3368_pilon__uns LN:62060 skipping SAM header line: @SQ SN:contig_3369_pilon__uns LN:1041 skipping SAM header line: @SQ SN:contig_336_pilon__uns LN:24230 skipping SAM header line: @SQ SN:contig_3372_pilon__uns LN:1148 skipping SAM header line: @SQ SN:contig_3373_pilon__uns LN:754 skipping SAM header line: @SQ SN:contig_3384_pilon__uns LN:783 skipping SAM header line: @SQ SN:contig_3389_pilon__uns LN:4477 skipping SAM header line: @SQ SN:contig_338_pilon__uns LN:124246 skipping SAM header line: @SQ SN:contig_3392_pilon__uns LN:963 skipping SAM header line: @SQ SN:contig_3396_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_3399_pilon__uns LN:1459 skipping SAM header line: @SQ SN:contig_3400_pilon__uns LN:570 skipping SAM header line: @SQ SN:contig_3402_pilon__uns LN:1591 skipping SAM header line: @SQ SN:contig_3405_pilon__uns LN:36874 skipping SAM header line: @SQ SN:contig_3406_pilon__uns LN:3141 skipping SAM header line: @SQ SN:contig_3407_pilon__uns LN:646 skipping SAM header line: @SQ SN:contig_3408_pilon__uns LN:819 skipping SAM header line: @SQ SN:contig_3410_pilon__uns LN:3795 skipping SAM header line: @SQ SN:contig_3412_pilon__uns LN:1602 skipping SAM header line: @SQ SN:contig_3415_pilon__uns LN:614 skipping SAM header line: @SQ SN:contig_3416_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_3418_pilon__uns LN:1250 skipping SAM header line: @SQ SN:contig_3419_pilon__uns LN:3300 skipping SAM header line: @SQ SN:contig_3421_pilon__uns LN:798 skipping SAM header line: @SQ SN:contig_3422_pilon__uns LN:509 skipping SAM header line: @SQ SN:contig_3424_pilon__uns LN:5893 skipping SAM header line: @SQ SN:contig_3427_pilon__uns LN:1819 skipping SAM header line: @SQ SN:contig_3430_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_3431_pilon__uns LN:11459 skipping SAM header line: @SQ SN:contig_3432_pilon__uns LN:1950 skipping SAM header line: @SQ SN:contig_3433_pilon__uns LN:32025 skipping SAM header line: @SQ SN:contig_3435_pilon__uns LN:10888 skipping SAM header line: @SQ SN:contig_3436_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_3437_pilon__uns LN:1243 skipping SAM header line: @SQ SN:contig_3441_pilon__uns LN:960 skipping SAM header line: @SQ SN:contig_3442_pilon__uns LN:587 skipping SAM header line: @SQ SN:contig_3445_pilon__uns LN:2891 skipping SAM header line: @SQ SN:contig_3448_pilon__uns LN:26440 skipping SAM header line: @SQ SN:contig_3450_pilon__uns LN:1015 skipping SAM header line: @SQ SN:contig_3455_pilon__uns LN:6592 skipping SAM header line: @SQ SN:contig_3456_pilon__uns LN:18185 skipping SAM header line: @SQ SN:contig_3466_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3467_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_3470_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_3474_pilon__uns LN:610 skipping SAM header line: @SQ SN:contig_3475_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_3482_pilon__uns LN:929 skipping SAM header line: @SQ SN:contig_3484_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_3486_pilon__uns LN:2161 skipping SAM header line: @SQ SN:contig_3487_pilon__uns LN:547 skipping SAM header line: @SQ SN:contig_3488_pilon__uns LN:4700 skipping SAM header line: @SQ SN:contig_3489_pilon__uns LN:601 skipping SAM header line: @SQ SN:contig_3494_pilon__uns LN:2448 skipping SAM header line: @SQ SN:contig_3495_pilon__uns LN:10453 skipping SAM header line: @SQ SN:contig_3496_pilon__uns LN:4759 skipping SAM header line: @SQ SN:contig_3497_pilon__uns LN:10997 skipping SAM header line: @SQ SN:contig_3501_pilon__uns LN:893 skipping SAM header line: @SQ SN:contig_3504_pilon__uns LN:260 skipping SAM header line: @SQ SN:contig_3507_pilon__uns LN:4037 skipping SAM header line: @SQ SN:contig_3510_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_3514_pilon__uns LN:1085 skipping SAM header line: @SQ SN:contig_3521_pilon__uns LN:33996 skipping SAM header line: @SQ SN:contig_3524_pilon__uns LN:213 skipping SAM header line: @SQ SN:contig_3527_pilon__uns LN:680 skipping SAM header line: @SQ SN:contig_3528_pilon__uns LN:1675 skipping SAM header line: @SQ SN:contig_352_pilon__uns LN:11196 skipping SAM header line: @SQ SN:contig_3531_pilon__uns LN:4804 skipping SAM header line: @SQ SN:contig_3533_pilon__uns LN:2242 skipping SAM header line: @SQ SN:contig_3538_pilon__uns LN:939 skipping SAM header line: @SQ SN:contig_353_pilon__uns LN:100892 skipping SAM header line: @SQ SN:contig_3540_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_3541_pilon__uns LN:1416 skipping SAM header line: @SQ SN:contig_3544_pilon__uns LN:794 skipping SAM header line: @SQ SN:contig_3546_pilon__uns LN:1288 skipping SAM header line: @SQ SN:contig_3547_pilon__uns LN:1487 skipping SAM header line: @SQ SN:contig_3549_pilon__uns LN:736 skipping SAM header line: @SQ SN:contig_3552_pilon__uns LN:13390 skipping SAM header line: @SQ SN:contig_3553_pilon__uns LN:4396 skipping SAM header line: @SQ SN:contig_3558_pilon__uns LN:50239 skipping SAM header line: @SQ SN:contig_355_pilon__uns LN:40018 skipping SAM header line: @SQ SN:contig_3560_pilon__uns LN:718 skipping SAM header line: @SQ SN:contig_3562_pilon__uns LN:672 skipping SAM header line: @SQ SN:contig_3564_pilon__uns LN:2057 skipping SAM header line: @SQ SN:contig_3565_pilon__uns LN:490 skipping SAM header line: @SQ SN:contig_356_pilon__uns LN:71027 skipping SAM header line: @SQ SN:contig_3572_pilon__uns LN:38558 skipping SAM header line: @SQ SN:contig_3574_pilon__uns LN:577 skipping SAM header line: @SQ SN:contig_3575_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_3576_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_3578_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_3579_pilon__uns LN:1588 skipping SAM header line: @SQ SN:contig_3580_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_3582_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_3584_pilon__uns LN:1159 skipping SAM header line: @SQ SN:contig_3585_pilon__uns LN:4714 skipping SAM header line: @SQ SN:contig_3590_pilon__uns LN:4696 skipping SAM header line: @SQ SN:contig_3591_pilon__uns LN:539 skipping SAM header line: @SQ SN:contig_3592_pilon__uns LN:622 skipping SAM header line: @SQ SN:contig_3596_pilon__uns LN:1081 skipping SAM header line: @SQ SN:contig_3598_pilon__uns LN:6106 skipping SAM header line: @SQ SN:contig_3600_pilon__uns LN:39741 skipping SAM header line: @SQ SN:contig_3605_pilon__uns LN:485 skipping SAM header line: @SQ SN:contig_3606_pilon__uns LN:880 skipping SAM header line: @SQ SN:contig_3607_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_3608_pilon__uns LN:1211 skipping SAM header line: @SQ SN:contig_360_pilon__uns LN:5796 skipping SAM header line: @SQ SN:contig_3610_pilon__uns LN:1885 skipping SAM header line: @SQ SN:contig_3611_pilon__uns LN:4180 skipping SAM header line: @SQ SN:contig_3612_pilon__uns LN:615 skipping SAM header line: @SQ SN:contig_361_pilon__uns LN:15591 skipping SAM header line: @SQ SN:contig_3620_pilon__uns LN:692 skipping SAM header line: @SQ SN:contig_3624_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_3625_pilon__uns LN:21166 skipping SAM header line: @SQ SN:contig_3628_pilon__uns LN:40175 skipping SAM header line: @SQ SN:contig_3629_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_3630_pilon__uns LN:5219 skipping SAM header line: @SQ SN:contig_3631_pilon__uns LN:978 skipping SAM header line: @SQ SN:contig_3632_pilon__uns LN:5773 skipping SAM header line: @SQ SN:contig_3636_pilon__uns LN:973 skipping SAM header line: @SQ SN:contig_3637_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_3638_pilon__uns LN:567 skipping SAM header line: @SQ SN:contig_3639_pilon__uns LN:822 skipping SAM header line: @SQ SN:contig_363_pilon__uns LN:56351 skipping SAM header line: @SQ SN:contig_3640_pilon__uns LN:43035 skipping SAM header line: @SQ SN:contig_3641_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_3643_pilon__uns LN:15629 skipping SAM header line: @SQ SN:contig_3644_pilon__uns LN:31686 skipping SAM header line: @SQ SN:contig_3648_pilon__uns LN:584 skipping SAM header line: @SQ SN:contig_364_pilon__uns LN:19907 skipping SAM header line: @SQ SN:contig_3657_pilon__uns LN:2480 skipping SAM header line: @SQ SN:contig_3659_pilon__uns LN:44926 skipping SAM header line: @SQ SN:contig_3660_pilon__uns LN:5026 skipping SAM header line: @SQ SN:contig_3661_pilon__uns LN:4450 skipping SAM header line: @SQ SN:contig_3665_pilon__uns LN:799 skipping SAM header line: @SQ SN:contig_3667_pilon__uns LN:2197 skipping SAM header line: @SQ SN:contig_3669_pilon__uns LN:686 skipping SAM header line: @SQ SN:contig_3670_pilon__uns LN:510 skipping SAM header line: @SQ SN:contig_3671_pilon__uns LN:3665 skipping SAM header line: @SQ SN:contig_3672_pilon__uns LN:11355 skipping SAM header line: @SQ SN:contig_3674_pilon__uns LN:696 skipping SAM header line: @SQ SN:contig_3677_pilon__uns LN:1942 skipping SAM header line: @SQ SN:contig_3678_pilon__uns LN:1214 skipping SAM header line: @SQ SN:contig_3679_pilon__uns LN:13597 skipping SAM header line: @SQ SN:contig_367_pilon__uns LN:127737 skipping SAM header line: @SQ SN:contig_3680_pilon__uns LN:507 skipping SAM header line: @SQ SN:contig_3682_pilon__uns LN:1203 skipping SAM header line: @SQ SN:contig_3683_pilon__uns LN:1123 skipping SAM header line: @SQ SN:contig_3684_pilon__uns LN:1598 skipping SAM header line: @SQ SN:contig_3687_pilon__uns LN:1061 skipping SAM header line: @SQ SN:contig_3689_pilon__uns LN:10413 skipping SAM header line: @SQ SN:contig_3691_pilon__uns LN:233 skipping SAM header line: @SQ SN:contig_3694_pilon__uns LN:983 skipping SAM header line: @SQ SN:contig_3696_pilon__uns LN:1514 skipping SAM header line: @SQ SN:contig_3704_pilon__uns LN:279 skipping SAM header line: @SQ SN:contig_3705_pilon__uns LN:612 skipping SAM header line: @SQ SN:contig_3707_pilon__uns LN:315 skipping SAM header line: @SQ SN:contig_370_pilon__uns LN:14427 skipping SAM header line: @SQ SN:contig_3711_pilon__uns LN:1165 skipping SAM header line: @SQ SN:contig_3714_pilon__uns LN:5864 skipping SAM header line: @SQ SN:contig_3715_pilon__uns LN:1421 skipping SAM header line: @SQ SN:contig_3716_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_3719_pilon__uns LN:1759 skipping SAM header line: @SQ SN:contig_3720_pilon__uns LN:1428 skipping SAM header line: @SQ SN:contig_3723_pilon__uns LN:22387 skipping SAM header line: @SQ SN:contig_3724_pilon__uns LN:73450 skipping SAM header line: @SQ SN:contig_3725_pilon__uns LN:492 skipping SAM header line: @SQ SN:contig_3726_pilon__uns LN:2384 skipping SAM header line: @SQ SN:contig_3727_pilon__uns LN:1029 skipping SAM header line: @SQ SN:contig_3728_pilon__uns LN:25413 skipping SAM header line: @SQ SN:contig_372_pilon__uns LN:157673 skipping SAM header line: @SQ SN:contig_3731_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_3732_pilon__uns LN:57763 skipping SAM header line: @SQ SN:contig_3733_pilon__uns LN:1689 skipping SAM header line: @SQ SN:contig_3734_pilon__uns LN:2249 skipping SAM header line: @SQ SN:contig_3735_pilon__uns LN:1958 skipping SAM header line: @SQ SN:contig_3736_pilon__uns LN:4839 skipping SAM header line: @SQ SN:contig_3737_pilon__uns LN:858 skipping SAM header line: @SQ SN:contig_3739_pilon__uns LN:1386 skipping SAM header line: @SQ SN:contig_3740_pilon__uns LN:4942 skipping SAM header line: @SQ SN:contig_3741_pilon__uns LN:2920 skipping SAM header line: @SQ SN:contig_3742_pilon__uns LN:1745 skipping SAM header line: @SQ SN:contig_3743_pilon__uns LN:4763 skipping SAM header line: @SQ SN:contig_3746_pilon__uns LN:1629 skipping SAM header line: @SQ SN:contig_3749_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_3750_pilon__uns LN:426 skipping SAM header line: @SQ SN:contig_3753_pilon__uns LN:1173 skipping SAM header line: @SQ SN:contig_3754_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_3755_pilon__uns LN:1263 skipping SAM header line: @SQ SN:contig_3756_pilon__uns LN:8369 skipping SAM header line: @SQ SN:contig_3758_pilon__uns LN:18983 skipping SAM header line: @SQ SN:contig_3761_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_3763_pilon__uns LN:2008 skipping SAM header line: @SQ SN:contig_3764_pilon__uns LN:12152 skipping SAM header line: @SQ SN:contig_3765_pilon__uns LN:42808 skipping SAM header line: @SQ SN:contig_3766_pilon__uns LN:2227 skipping SAM header line: @SQ SN:contig_3770_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_3772_pilon__uns LN:23436 skipping SAM header line: @SQ SN:contig_3773_pilon__uns LN:1113 skipping SAM header line: @SQ SN:contig_3774_pilon__uns LN:402 skipping SAM header line: @SQ SN:contig_3775_pilon__uns LN:1196 skipping SAM header line: @SQ SN:contig_3776_pilon__uns LN:1415 skipping SAM header line: @SQ SN:contig_3777_pilon__uns LN:501 skipping SAM header line: @SQ SN:contig_3778_pilon__uns LN:872 skipping SAM header line: @SQ SN:contig_3779_pilon__uns LN:78302 skipping SAM header line: @SQ SN:contig_377_pilon__uns LN:24607 skipping SAM header line: @SQ SN:contig_3780_pilon__uns LN:15953 skipping SAM header line: @SQ SN:contig_3781_pilon__uns LN:202064 skipping SAM header line: @SQ SN:contig_3782_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_3783_pilon__uns LN:1545 skipping SAM header line: @SQ SN:contig_3784_pilon__uns LN:27087 skipping SAM header line: @SQ SN:contig_3785_pilon__uns LN:768 skipping SAM header line: @SQ SN:contig_3789_pilon__uns LN:5655 skipping SAM header line: @SQ SN:contig_3790_pilon__uns LN:654 skipping SAM header line: @SQ SN:contig_3791_pilon__uns LN:1361 skipping SAM header line: @SQ SN:contig_3793_pilon__uns LN:50121 skipping SAM header line: @SQ SN:contig_3794_pilon__uns LN:987 skipping SAM header line: @SQ SN:contig_3797_pilon__uns LN:2240 skipping SAM header line: @SQ SN:contig_3801_pilon__uns LN:1987 skipping SAM header line: @SQ SN:contig_3804_pilon__uns LN:997 skipping SAM header line: @SQ SN:contig_3805_pilon__uns LN:2138 skipping SAM header line: @SQ SN:contig_3806_pilon__uns LN:2907 skipping SAM header line: @SQ SN:contig_3809_pilon__uns LN:813 skipping SAM header line: @SQ SN:contig_3811_pilon__uns LN:1099 skipping SAM header line: @SQ SN:contig_3812_pilon__uns LN:39563 skipping SAM header line: @SQ SN:contig_3814_pilon__uns LN:24788 skipping SAM header line: @SQ SN:contig_3815_pilon__uns LN:12615 skipping SAM header line: @SQ SN:contig_3818_pilon__uns LN:4198 skipping SAM header line: @SQ SN:contig_3819_pilon__uns LN:3391 skipping SAM header line: @SQ SN:contig_3824_pilon__uns LN:16996 skipping SAM header line: @SQ SN:contig_3825_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_3826_pilon__uns LN:1701 skipping SAM header line: @SQ SN:contig_3828_pilon__uns LN:2465 skipping SAM header line: @SQ SN:contig_3829_pilon__uns LN:2402 skipping SAM header line: @SQ SN:contig_382_pilon__uns LN:89959 skipping SAM header line: @SQ SN:contig_3830_pilon__uns LN:3712 skipping SAM header line: @SQ SN:contig_3832_pilon__uns LN:104852 skipping SAM header line: @SQ SN:contig_3834_pilon__uns LN:27327 skipping SAM header line: @SQ SN:contig_3835_pilon__uns LN:1951 skipping SAM header line: @SQ SN:contig_3837_pilon__uns LN:7878 skipping SAM header line: @SQ SN:contig_3838_pilon__uns LN:2105 skipping SAM header line: @SQ SN:contig_3841_pilon__uns LN:1285 skipping SAM header line: @SQ SN:contig_3843_pilon__uns LN:1022 skipping SAM header line: @SQ SN:contig_3844_pilon__uns LN:254 skipping SAM header line: @SQ SN:contig_3845_pilon__uns LN:720 skipping SAM header line: @SQ SN:contig_3847_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_3849_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_3853_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_3855_pilon__uns LN:554 skipping SAM header line: @SQ SN:contig_3856_pilon__uns LN:2030 skipping SAM header line: @SQ SN:contig_3858_pilon__uns LN:796 skipping SAM header line: @SQ SN:contig_3859_pilon__uns LN:1122 skipping SAM header line: @SQ SN:contig_385_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_3860_pilon__uns LN:1342 skipping SAM header line: @SQ SN:contig_3862_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3863_pilon__uns LN:871 skipping SAM header line: @SQ SN:contig_3864_pilon__uns LN:1510 skipping SAM header line: @SQ SN:contig_3866_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_3867_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_3869_pilon__uns LN:1036 skipping SAM header line: @SQ SN:contig_3871_pilon__uns LN:631 skipping SAM header line: @SQ SN:contig_3873_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_3876_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_3878_pilon__uns LN:4230 skipping SAM header line: @SQ SN:contig_3881_pilon__uns LN:1270 skipping SAM header line: @SQ SN:contig_3883_pilon__uns LN:11381 skipping SAM header line: @SQ SN:contig_3884_pilon__uns LN:1557 skipping SAM header line: @SQ SN:contig_3889_pilon__uns LN:27275 skipping SAM header line: @SQ SN:contig_388_pilon___frag_1__uns LN:237430 skipping SAM header line: @SQ SN:contig_388_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_3__uns LN:73001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_388_pilon___frag_5__uns LN:135237 skipping SAM header line: @SQ SN:contig_3892_pilon__uns LN:14424 skipping SAM header line: @SQ SN:contig_3896_pilon__uns LN:558 skipping SAM header line: @SQ SN:contig_389_pilon__uns LN:158705 skipping SAM header line: @SQ SN:contig_3905_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_390_pilon__uns LN:23029 skipping SAM header line: @SQ SN:contig_3911_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_3912_pilon__uns LN:11374 skipping SAM header line: @SQ SN:contig_3929_pilon__uns LN:1815 skipping SAM header line: @SQ SN:contig_392_pilon__uns LN:14492 skipping SAM header line: @SQ SN:contig_3938_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_3939_pilon__uns LN:1114 skipping SAM header line: @SQ SN:contig_3941_pilon__uns LN:503 skipping SAM header line: @SQ SN:contig_3947_pilon__uns LN:579 skipping SAM header line: @SQ SN:contig_3952_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_3954_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_3958_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_3959_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_395_pilon__uns LN:150415 skipping SAM header line: @SQ SN:contig_3960_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_3963_pilon__uns LN:14275 skipping SAM header line: @SQ SN:contig_3964_pilon__uns LN:18858 skipping SAM header line: @SQ SN:contig_3967_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_396_pilon__uns LN:103814 skipping SAM header line: @SQ SN:contig_3981_pilon__uns LN:12804 skipping SAM header line: @SQ SN:contig_3982_pilon__uns LN:537 skipping SAM header line: @SQ SN:contig_3985_pilon__uns LN:56993 skipping SAM header line: @SQ SN:contig_3987_pilon__uns LN:776 skipping SAM header line: @SQ SN:contig_3989_pilon__uns LN:8215 skipping SAM header line: @SQ SN:contig_3996_pilon__uns LN:195368 skipping SAM header line: @SQ SN:contig_3997_pilon__uns LN:216 skipping SAM header line: @SQ SN:contig_3998_pilon__uns LN:602 skipping SAM header line: @SQ SN:contig_39_pilon__uns LN:10916 skipping SAM header line: @SQ SN:contig_3_pilon__uns LN:10510 skipping SAM header line: @SQ SN:contig_4000_pilon__uns LN:14147 skipping SAM header line: @SQ SN:contig_4011_pilon__uns LN:575 skipping SAM header line: @SQ SN:contig_4015_pilon__uns LN:2903 skipping SAM header line: @SQ SN:contig_401_pilon__uns LN:11163 skipping SAM header line: @SQ SN:contig_4034_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_4036_pilon__uns LN:836 skipping SAM header line: @SQ SN:contig_4039_pilon__uns LN:3506 skipping SAM header line: @SQ SN:contig_4042_pilon__uns LN:10314 skipping SAM header line: @SQ SN:contig_4056_pilon__uns LN:5933 skipping SAM header line: @SQ SN:contig_4067_pilon__uns LN:205694 skipping SAM header line: @SQ SN:contig_4069_pilon__uns LN:3935 skipping SAM header line: @SQ SN:contig_4074_pilon__uns LN:5660 skipping SAM header line: @SQ SN:contig_407_pilon__uns LN:35907 skipping SAM header line: @SQ SN:contig_4081_pilon__uns LN:737 skipping SAM header line: @SQ SN:contig_4082_pilon__uns LN:928 skipping SAM header line: @SQ SN:contig_4083_pilon__uns LN:27688 skipping SAM header line: @SQ SN:contig_4089_pilon__uns LN:1739 skipping SAM header line: @SQ SN:contig_4091_pilon__uns LN:13450 skipping SAM header line: @SQ SN:contig_4092_pilon__uns LN:6766 skipping SAM header line: @SQ SN:contig_40_pilon__uns LN:8315 skipping SAM header line: @SQ SN:contig_4100_pilon__uns LN:7980 skipping SAM header line: @SQ SN:contig_4105_pilon__uns LN:20120 skipping SAM header line: @SQ SN:contig_4109_pilon__uns LN:6193 skipping SAM header line: @SQ SN:contig_4111_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_4115_pilon__uns LN:4803 skipping SAM header line: @SQ SN:contig_4118_pilon__uns LN:6176 skipping SAM header line: @SQ SN:contig_4120_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4126_pilon__uns LN:57632 skipping SAM header line: @SQ SN:contig_4132_pilon__uns LN:23163 skipping SAM header line: @SQ SN:contig_4135_pilon__uns LN:995 skipping SAM header line: @SQ SN:contig_4138_pilon__uns LN:5293 skipping SAM header line: @SQ SN:contig_4139_pilon__uns LN:5930 skipping SAM header line: @SQ SN:contig_4141_pilon__uns LN:4414 skipping SAM header line: @SQ SN:contig_4148_pilon__uns LN:2393 skipping SAM header line: @SQ SN:contig_414_pilon__uns LN:226694 skipping SAM header line: @SQ SN:contig_4152_pilon__uns LN:2682 skipping SAM header line: @SQ SN:contig_4157_pilon__uns LN:84522 skipping SAM header line: @SQ SN:contig_415_pilon__uns LN:6660 skipping SAM header line: @SQ SN:contig_4161_pilon__uns LN:8311 skipping SAM header line: @SQ SN:contig_4163_pilon__uns LN:2194 skipping SAM header line: @SQ SN:contig_4165_pilon__uns LN:1743 skipping SAM header line: @SQ SN:contig_4169_pilon__uns LN:49944 skipping SAM header line: @SQ SN:contig_4182_pilon__uns LN:240319 skipping SAM header line: @SQ SN:contig_4188_pilon__uns LN:8617 skipping SAM header line: @SQ SN:contig_4189_pilon__uns LN:2558 skipping SAM header line: @SQ SN:contig_418_pilon__uns LN:58668 skipping SAM header line: @SQ SN:contig_4192_pilon__uns LN:30859 skipping SAM header line: @SQ SN:contig_4197_pilon__uns LN:3951 skipping SAM header line: @SQ SN:contig_4202_pilon__uns LN:5844 skipping SAM header line: @SQ SN:contig_4203_pilon__uns LN:42289 skipping SAM header line: @SQ SN:contig_420_pilon__uns LN:24873 skipping SAM header line: @SQ SN:contig_4212_pilon__uns LN:292548 skipping SAM header line: @SQ SN:contig_4213_pilon__uns LN:5307 skipping SAM header line: @SQ SN:contig_4217_pilon__uns LN:16392 skipping SAM header line: @SQ SN:contig_421_pilon__uns LN:20849 skipping SAM header line: @SQ SN:contig_4221_pilon__uns LN:1478 skipping SAM header line: @SQ SN:contig_4224_pilon__uns LN:11763 skipping SAM header line: @SQ SN:contig_4225_pilon__uns LN:1985 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4226_pilon___frag_3__uns LN:33010 skipping SAM header line: @SQ SN:contig_4227_pilon__uns LN:34299 skipping SAM header line: @SQ SN:contig_4229_pilon__uns LN:10050 skipping SAM header line: @SQ SN:contig_422_pilon__uns LN:54879 skipping SAM header line: @SQ SN:contig_4231_pilon__uns LN:4099 skipping SAM header line: @SQ SN:contig_4234_pilon__uns LN:9652 skipping SAM header line: @SQ SN:contig_4237_pilon__uns LN:1877 skipping SAM header line: @SQ SN:contig_423_pilon__uns LN:21082 skipping SAM header line: @SQ SN:contig_4242_pilon__uns LN:7754 skipping SAM header line: @SQ SN:contig_4244_pilon__uns LN:5600 skipping SAM header line: @SQ SN:contig_4246_pilon__uns LN:103767 skipping SAM header line: @SQ SN:contig_424_pilon__uns LN:26297 skipping SAM header line: @SQ SN:contig_4256_pilon__uns LN:27642 skipping SAM header line: @SQ SN:contig_4257_pilon__uns LN:90525 skipping SAM header line: @SQ SN:contig_4261_pilon__uns LN:14421 skipping SAM header line: @SQ SN:contig_4263_pilon__uns LN:4250 skipping SAM header line: @SQ SN:contig_4267_pilon__uns LN:168836 skipping SAM header line: @SQ SN:contig_4268_pilon__uns LN:98293 skipping SAM header line: @SQ SN:contig_4270_pilon__uns LN:18954 skipping SAM header line: @SQ SN:contig_4271_pilon__uns LN:1919 skipping SAM header line: @SQ SN:contig_4272_pilon__uns LN:2978 skipping SAM header line: @SQ SN:contig_4274_pilon__uns LN:207802 skipping SAM header line: @SQ SN:contig_4280_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_4281_pilon__uns LN:63691 skipping SAM header line: @SQ SN:contig_4285_pilon__uns LN:23448 skipping SAM header line: @SQ SN:contig_4287_pilon__uns LN:98631 skipping SAM header line: @SQ SN:contig_4291_pilon__uns LN:23961 skipping SAM header line: @SQ SN:contig_4294_pilon__uns LN:16223 skipping SAM header line: @SQ SN:contig_4295_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_4297_pilon__uns LN:23543 skipping SAM header line: @SQ SN:contig_429_pilon__uns LN:44290 skipping SAM header line: @SQ SN:contig_4301_pilon__uns LN:5525 skipping SAM header line: @SQ SN:contig_4307_pilon__uns LN:12749 skipping SAM header line: @SQ SN:contig_4314_pilon__uns LN:481 skipping SAM header line: @SQ SN:contig_4319_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_4324_pilon__uns LN:2330 skipping SAM header line: @SQ SN:contig_4326_pilon__uns LN:14382 skipping SAM header line: @SQ SN:contig_4328_pilon__uns LN:91484 skipping SAM header line: @SQ SN:contig_4335_pilon__uns LN:154880 skipping SAM header line: @SQ SN:contig_4336_pilon__uns LN:61379 skipping SAM header line: @SQ SN:contig_4340_pilon__uns LN:4014 skipping SAM header line: @SQ SN:contig_4342_pilon__uns LN:3439 skipping SAM header line: @SQ SN:contig_4345_pilon__uns LN:35975 skipping SAM header line: @SQ SN:contig_4347_pilon__uns LN:2311 skipping SAM header line: @SQ SN:contig_4350_pilon__uns LN:7199 skipping SAM header line: @SQ SN:contig_4353_pilon__uns LN:19416 skipping SAM header line: @SQ SN:contig_4356_pilon__uns LN:35233 skipping SAM header line: @SQ SN:contig_435_pilon__uns LN:24397 skipping SAM header line: @SQ SN:contig_4377_pilon__uns LN:624 skipping SAM header line: @SQ SN:contig_4378_pilon__uns LN:98197 skipping SAM header line: @SQ SN:contig_437_pilon__uns LN:11035 skipping SAM header line: @SQ SN:contig_4380_pilon__uns LN:28949 skipping SAM header line: @SQ SN:contig_4389_pilon__uns LN:115908 skipping SAM header line: @SQ SN:contig_4391_pilon__uns LN:4832 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_1__uns LN:55376 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4392_pilon___frag_3__uns LN:32250 skipping SAM header line: @SQ SN:contig_4394_pilon__uns LN:55173 skipping SAM header line: @SQ SN:contig_4397_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_1__uns LN:128389 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_3__uns LN:18001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_4401_pilon___frag_5__uns LN:104394 skipping SAM header line: @SQ SN:contig_4404_pilon__uns LN:2633 skipping SAM header line: @SQ SN:contig_4406_pilon__uns LN:79444 skipping SAM header line: @SQ SN:contig_4408_pilon__uns LN:829 skipping SAM header line: @SQ SN:contig_440_pilon__uns LN:166917 skipping SAM header line: @SQ SN:contig_4412_pilon__uns LN:25487 skipping SAM header line: @SQ SN:contig_4413_pilon__uns LN:58953 skipping SAM header line: @SQ SN:contig_4416_pilon__uns LN:14793 skipping SAM header line: @SQ SN:contig_4424_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4426_pilon__uns LN:3302 skipping SAM header line: @SQ SN:contig_4427_pilon__uns LN:52525 skipping SAM header line: @SQ SN:contig_442_pilon__uns LN:37193 skipping SAM header line: @SQ SN:contig_4435_pilon__uns LN:42965 skipping SAM header line: @SQ SN:contig_4441_pilon__uns LN:136249 skipping SAM header line: @SQ SN:contig_444_pilon___frag_1__uns LN:21570 skipping SAM header line: @SQ SN:contig_444_pilon___frag_10___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_11__uns LN:102466 skipping SAM header line: @SQ SN:contig_444_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_3__uns LN:21001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_4___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_5__uns LN:22001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_6___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_7__uns LN:36001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_8___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_1__uns LN:22995 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_444_pilon___frag_9___frag_3__uns LN:47150 skipping SAM header line: @SQ SN:contig_4451_pilon__uns LN:20514 skipping SAM header line: @SQ SN:contig_4456_pilon__uns LN:744 skipping SAM header line: @SQ SN:contig_4460_pilon__uns LN:256227 skipping SAM header line: @SQ SN:contig_4464_pilon__uns LN:53285 skipping SAM header line: @SQ SN:contig_4466_pilon__uns LN:59881 skipping SAM header line: @SQ SN:contig_4468_pilon__uns LN:219392 skipping SAM header line: @SQ SN:contig_4469_pilon__uns LN:2751 skipping SAM header line: @SQ SN:contig_446_pilon__uns LN:15341 skipping SAM header line: @SQ SN:contig_4471_pilon__uns LN:16199 skipping SAM header line: @SQ SN:contig_4472_pilon__uns LN:4344 skipping SAM header line: @SQ SN:contig_4480_pilon__uns LN:62477 skipping SAM header line: @SQ SN:contig_4494_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_4496_pilon__uns LN:512 skipping SAM header line: @SQ SN:contig_4506_pilon__uns LN:144629 skipping SAM header line: @SQ SN:contig_4510_pilon__uns LN:814 skipping SAM header line: @SQ SN:contig_4517_pilon__uns LN:199088 skipping SAM header line: @SQ SN:contig_4519_pilon__uns LN:160735 skipping SAM header line: @SQ SN:contig_4520_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4524_pilon__uns LN:650 skipping SAM header line: @SQ SN:contig_4530_pilon__uns LN:87169 skipping SAM header line: @SQ SN:contig_4535_pilon__uns LN:494 skipping SAM header line: @SQ SN:contig_4539_pilon__uns LN:28181 skipping SAM header line: @SQ SN:contig_453_pilon__uns LN:1482 skipping SAM header line: @SQ SN:contig_4540_pilon__uns LN:94444 skipping SAM header line: @SQ SN:contig_4554_pilon__uns LN:1276 skipping SAM header line: @SQ SN:contig_456_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4570_pilon__uns LN:117653 skipping SAM header line: @SQ SN:contig_4571_pilon__uns LN:1359 skipping SAM header line: @SQ SN:contig_4583_pilon__uns LN:12161 skipping SAM header line: @SQ SN:contig_4586_pilon__uns LN:13415 skipping SAM header line: @SQ SN:contig_4588_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4602_pilon__uns LN:24373 skipping SAM header line: @SQ SN:contig_4610_pilon__uns LN:1569 skipping SAM header line: @SQ SN:contig_4618_pilon__uns LN:163587 skipping SAM header line: @SQ SN:contig_4619_pilon__uns LN:2103 skipping SAM header line: @SQ SN:contig_4623_pilon__uns LN:57322 skipping SAM header line: @SQ SN:contig_4634_pilon__uns LN:2321 skipping SAM header line: @SQ SN:contig_4636_pilon__uns LN:1989 skipping SAM header line: @SQ SN:contig_4641_pilon__uns LN:2303 skipping SAM header line: @SQ SN:contig_4643_pilon__uns LN:22046 skipping SAM header line: @SQ SN:contig_4644_pilon__uns LN:844 skipping SAM header line: @SQ SN:contig_4647_pilon__uns LN:5675 skipping SAM header line: @SQ SN:contig_464_pilon__uns LN:123656 skipping SAM header line: @SQ SN:contig_4663_pilon__uns LN:119416 skipping SAM header line: @SQ SN:contig_4664_pilon__uns LN:45920 skipping SAM header line: @SQ SN:contig_4667_pilon__uns LN:82309 skipping SAM header line: @SQ SN:contig_4672_pilon__uns LN:172258 skipping SAM header line: @SQ SN:contig_4678_pilon__uns LN:51903 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_1__uns LN:24015 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_3__uns LN:32945 skipping SAM header line: @SQ SN:contig_4680_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4693_pilon__uns LN:6416 skipping SAM header line: @SQ SN:contig_4707_pilon__uns LN:70546 skipping SAM header line: @SQ SN:contig_4709_pilon__uns LN:33590 skipping SAM header line: @SQ SN:contig_4718_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_4727_pilon__uns LN:6347 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_1__uns LN:101617 skipping SAM header line: @SQ SN:contig_4728_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_4731_pilon__uns LN:10152 skipping SAM header line: @SQ SN:contig_4733_pilon__uns LN:138293 skipping SAM header line: @SQ SN:contig_4741_pilon__uns LN:30675 skipping SAM header line: @SQ SN:contig_4742_pilon__uns LN:827 skipping SAM header line: @SQ SN:contig_4752_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_4757_pilon__uns LN:89581 skipping SAM header line: @SQ SN:contig_4763_pilon__uns LN:119212 skipping SAM header line: @SQ SN:contig_4765_pilon__uns LN:662 skipping SAM header line: @SQ SN:contig_476_pilon__uns LN:79115 skipping SAM header line: @SQ SN:contig_4771_pilon__uns LN:144614 skipping SAM header line: @SQ SN:contig_4773_pilon__uns LN:4885 skipping SAM header line: @SQ SN:contig_4774_pilon__uns LN:515 skipping SAM header line: @SQ SN:contig_4779_pilon__uns LN:28812 skipping SAM header line: @SQ SN:contig_477_pilon__uns LN:39187 skipping SAM header line: @SQ SN:contig_4802_pilon__uns LN:32128 skipping SAM header line: @SQ SN:contig_4803_pilon__uns LN:66147 skipping SAM header line: @SQ SN:contig_4805_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_4809_pilon__uns LN:7202 skipping SAM header line: @SQ SN:contig_480_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_4811_pilon__uns LN:2905 skipping SAM header line: @SQ SN:contig_4812_pilon__uns LN:3429 skipping SAM header line: @SQ SN:contig_4814_pilon__uns LN:6209 skipping SAM header line: @SQ SN:contig_4820_pilon__uns LN:6829 skipping SAM header line: @SQ SN:contig_4821_pilon__uns LN:18367 skipping SAM header line: @SQ SN:contig_4829_pilon__uns LN:947 skipping SAM header line: @SQ SN:contig_482_pilon__uns LN:179811 skipping SAM header line: @SQ SN:contig_4830_pilon__uns LN:3240 skipping SAM header line: @SQ SN:contig_4834_pilon__uns LN:31766 skipping SAM header line: @SQ SN:contig_4843_pilon__uns LN:376489 skipping SAM header line: @SQ SN:contig_4854_pilon__uns LN:62177 skipping SAM header line: @SQ SN:contig_4859_pilon__uns LN:28092 skipping SAM header line: @SQ SN:contig_485_pilon__uns LN:71298 skipping SAM header line: @SQ SN:contig_486_pilon__uns LN:80004 skipping SAM header line: @SQ SN:contig_4873_pilon__uns LN:544 skipping SAM header line: @SQ SN:contig_4877_pilon__uns LN:24718 skipping SAM header line: @SQ SN:contig_4888_pilon__uns LN:3609 skipping SAM header line: @SQ SN:contig_4894_pilon__uns LN:2076 skipping SAM header line: @SQ SN:contig_489_pilon__uns LN:22784 skipping SAM header line: @SQ SN:contig_4904_pilon__uns LN:4038 skipping SAM header line: @SQ SN:contig_4905_pilon__uns LN:586 skipping SAM header line: @SQ SN:contig_4909_pilon__uns LN:839 skipping SAM header line: @SQ SN:contig_4915_pilon__uns LN:5315 skipping SAM header line: @SQ SN:contig_4919_pilon__uns LN:3801 skipping SAM header line: @SQ SN:contig_4927_pilon__uns LN:2369 skipping SAM header line: @SQ SN:contig_4929_pilon__uns LN:835 skipping SAM header line: @SQ SN:contig_4936_pilon__uns LN:52193 skipping SAM header line: @SQ SN:contig_4938_pilon__uns LN:192080 skipping SAM header line: @SQ SN:contig_4941_pilon__uns LN:4642 skipping SAM header line: @SQ SN:contig_4942_pilon__uns LN:112700 skipping SAM header line: @SQ SN:contig_4944_pilon__uns LN:23664 skipping SAM header line: @SQ SN:contig_4947_pilon__uns LN:24962 skipping SAM header line: @SQ SN:contig_4950_pilon__uns LN:60704 skipping SAM header line: @SQ SN:contig_4953_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_4955_pilon__uns LN:93394 skipping SAM header line: @SQ SN:contig_4965_pilon__uns LN:10423 skipping SAM header line: @SQ SN:contig_4966_pilon__uns LN:56459 skipping SAM header line: @SQ SN:contig_4968_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_4970_pilon__uns LN:22686 skipping SAM header line: @SQ SN:contig_4972_pilon__uns LN:1638 skipping SAM header line: @SQ SN:contig_497_pilon__uns LN:42043 skipping SAM header line: @SQ SN:contig_4996_pilon__uns LN:5519 skipping SAM header line: @SQ SN:contig_4999_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_499_pilon__uns LN:5025 skipping SAM header line: @SQ SN:contig_49_pilon__uns LN:46608 skipping SAM header line: @SQ SN:contig_5002_pilon__uns LN:94934 skipping SAM header line: @SQ SN:contig_5003_pilon__uns LN:5721 skipping SAM header line: @SQ SN:contig_5007_pilon__uns LN:790 skipping SAM header line: @SQ SN:contig_5014_pilon__uns LN:83131 skipping SAM header line: @SQ SN:contig_5015_pilon__uns LN:76564 skipping SAM header line: @SQ SN:contig_5018_pilon__uns LN:809 skipping SAM header line: @SQ SN:contig_5019_pilon__uns LN:4071 skipping SAM header line: @SQ SN:contig_5025_pilon__uns LN:59756 skipping SAM header line: @SQ SN:contig_5029_pilon__uns LN:11500 skipping SAM header line: @SQ SN:contig_5034_pilon__uns LN:4351 skipping SAM header line: @SQ SN:contig_5036_pilon__uns LN:4807 skipping SAM header line: @SQ SN:contig_5042_pilon__uns LN:244490 skipping SAM header line: @SQ SN:contig_5043_pilon__uns LN:716 skipping SAM header line: @SQ SN:contig_5049_pilon__uns LN:731 skipping SAM header line: @SQ SN:contig_5053_pilon__uns LN:12664 skipping SAM header line: @SQ SN:contig_5058_pilon__uns LN:583 skipping SAM header line: @SQ SN:contig_5059_pilon__uns LN:23397 skipping SAM header line: @SQ SN:contig_505_pilon__uns LN:1654 skipping SAM header line: @SQ SN:contig_5065_pilon__uns LN:31098 skipping SAM header line: @SQ SN:contig_5066_pilon__uns LN:94498 skipping SAM header line: @SQ SN:contig_5070_pilon__uns LN:122384 skipping SAM header line: @SQ SN:contig_5071_pilon__uns LN:1139 skipping SAM header line: @SQ SN:contig_5074_pilon__uns LN:2759 skipping SAM header line: @SQ SN:contig_5081_pilon__uns LN:24613 skipping SAM header line: @SQ SN:contig_5082_pilon__uns LN:6804 skipping SAM header line: @SQ SN:contig_5084_pilon__uns LN:1484 skipping SAM header line: @SQ SN:contig_5090_pilon__uns LN:64536 skipping SAM header line: @SQ SN:contig_5093_pilon__uns LN:1642 skipping SAM header line: @SQ SN:contig_5099_pilon__uns LN:88863 skipping SAM header line: @SQ SN:contig_50_pilon__uns LN:180563 skipping SAM header line: @SQ SN:contig_5107_pilon__uns LN:3615 skipping SAM header line: @SQ SN:contig_5112_pilon__uns LN:33674 skipping SAM header line: @SQ SN:contig_5118_pilon__uns LN:585 skipping SAM header line: @SQ SN:contig_5119_pilon__uns LN:3834 skipping SAM header line: @SQ SN:contig_511_pilon__uns LN:4140 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_1__uns LN:196648 skipping SAM header line: @SQ SN:contig_5123_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5126_pilon__uns LN:31139 skipping SAM header line: @SQ SN:contig_5127_pilon__uns LN:122358 skipping SAM header line: @SQ SN:contig_5132_pilon__uns LN:894 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_5135_pilon___frag_3__uns LN:242641 skipping SAM header line: @SQ SN:contig_5138_pilon__uns LN:5606 skipping SAM header line: @SQ SN:contig_5144_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_5149_pilon__uns LN:21050 skipping SAM header line: @SQ SN:contig_514_pilon__uns LN:67786 skipping SAM header line: @SQ SN:contig_5160_pilon__uns LN:117768 skipping SAM header line: @SQ SN:contig_5162_pilon__uns LN:3104 skipping SAM header line: @SQ SN:contig_5175_pilon__uns LN:44872 skipping SAM header line: @SQ SN:contig_5176_pilon__uns LN:550 skipping SAM header line: @SQ SN:contig_5178_pilon__uns LN:51620 skipping SAM header line: @SQ SN:contig_5183_pilon__uns LN:11102 skipping SAM header line: @SQ SN:contig_5190_pilon__uns LN:257161 skipping SAM header line: @SQ SN:contig_5193_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_5195_pilon__uns LN:4133 skipping SAM header line: @SQ SN:contig_5198_pilon__uns LN:6755 skipping SAM header line: @SQ SN:contig_5211_pilon__uns LN:121424 skipping SAM header line: @SQ SN:contig_5213_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5223_pilon__uns LN:1984 skipping SAM header line: @SQ SN:contig_5226_pilon__uns LN:150949 skipping SAM header line: @SQ SN:contig_522_pilon__uns LN:5974 skipping SAM header line: @SQ SN:contig_5235_pilon__uns LN:1723 skipping SAM header line: @SQ SN:contig_5236_pilon__uns LN:49028 skipping SAM header line: @SQ SN:contig_5237_pilon__uns LN:321 skipping SAM header line: @SQ SN:contig_523_pilon___frag_1__uns LN:26878 skipping SAM header line: @SQ SN:contig_523_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_523_pilon___frag_3__uns LN:53134 skipping SAM header line: @SQ SN:contig_5244_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_5246_pilon__uns LN:72901 skipping SAM header line: @SQ SN:contig_5250_pilon__uns LN:6668 skipping SAM header line: @SQ SN:contig_5253_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_5257_pilon__uns LN:1798 skipping SAM header line: @SQ SN:contig_5258_pilon__uns LN:38282 skipping SAM header line: @SQ SN:contig_5259_pilon__uns LN:895 skipping SAM header line: @SQ SN:contig_5262_pilon__uns LN:6119 skipping SAM header line: @SQ SN:contig_5266_pilon__uns LN:1321 skipping SAM header line: @SQ SN:contig_5272_pilon__uns LN:3336 skipping SAM header line: @SQ SN:contig_5274_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_5276_pilon__uns LN:54555 skipping SAM header line: @SQ SN:contig_5286_pilon__uns LN:99766 skipping SAM header line: @SQ SN:contig_5295_pilon__uns LN:129209 skipping SAM header line: @SQ SN:contig_5299_pilon__uns LN:147086 skipping SAM header line: @SQ SN:contig_5306_pilon__uns LN:681 skipping SAM header line: @SQ SN:contig_533_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5343_pilon__uns LN:1378 skipping SAM header line: @SQ SN:contig_5345_pilon__uns LN:6258 skipping SAM header line: @SQ SN:contig_5354_pilon__uns LN:18613 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_1__uns LN:101300 skipping SAM header line: @SQ SN:contig_5357_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_535_pilon__uns LN:7848 skipping SAM header line: @SQ SN:contig_5363_pilon__uns LN:77528 skipping SAM header line: @SQ SN:contig_5366_pilon__uns LN:2543 skipping SAM header line: @SQ SN:contig_5373_pilon__uns LN:39485 skipping SAM header line: @SQ SN:contig_5379_pilon__uns LN:305079 skipping SAM header line: @SQ SN:contig_5388_pilon__uns LN:39926 skipping SAM header line: @SQ SN:contig_5394_pilon__uns LN:1669 skipping SAM header line: @SQ SN:contig_5397_pilon__uns LN:5122 skipping SAM header line: @SQ SN:contig_5398_pilon__uns LN:81776 skipping SAM header line: @SQ SN:contig_539_pilon__uns LN:46889 skipping SAM header line: @SQ SN:contig_5408_pilon__uns LN:11438 skipping SAM header line: @SQ SN:contig_5409_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_540_pilon__uns LN:82795 skipping SAM header line: @SQ SN:contig_5411_pilon__uns LN:324 skipping SAM header line: @SQ SN:contig_5412_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_5414_pilon__uns LN:76913 skipping SAM header line: @SQ SN:contig_5415_pilon__uns LN:109233 skipping SAM header line: @SQ SN:contig_5427_pilon__uns LN:4598 skipping SAM header line: @SQ SN:contig_5431_pilon__uns LN:4967 skipping SAM header line: @SQ SN:contig_5434_pilon__uns LN:114223 skipping SAM header line: @SQ SN:contig_5436_pilon__uns LN:21747 skipping SAM header line: @SQ SN:contig_5437_pilon__uns LN:33222 skipping SAM header line: @SQ SN:contig_543_pilon__uns LN:52447 skipping SAM header line: @SQ SN:contig_5443_pilon__uns LN:3650 skipping SAM header line: @SQ SN:contig_5444_pilon__uns LN:34386 skipping SAM header line: @SQ SN:contig_5446_pilon__uns LN:43204 skipping SAM header line: @SQ SN:contig_5451_pilon__uns LN:4049 skipping SAM header line: @SQ SN:contig_5456_pilon__uns LN:596 skipping SAM header line: @SQ SN:contig_5458_pilon__uns LN:12020 skipping SAM header line: @SQ SN:contig_5479_pilon__uns LN:116642 skipping SAM header line: @SQ SN:contig_547_pilon__uns LN:118856 skipping SAM header line: @SQ SN:contig_548_pilon__uns LN:17798 skipping SAM header line: @SQ SN:contig_5493_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_5499_pilon__uns LN:27751 skipping SAM header line: @SQ SN:contig_54_pilon__uns LN:49657 skipping SAM header line: @SQ SN:contig_5504_pilon__uns LN:1695 skipping SAM header line: @SQ SN:contig_5522_pilon__uns LN:65556 skipping SAM header line: @SQ SN:contig_5526_pilon__uns LN:71090 skipping SAM header line: @SQ SN:contig_5532_pilon__uns LN:34374 skipping SAM header line: @SQ SN:contig_5533_pilon__uns LN:3133 skipping SAM header line: @SQ SN:contig_5537_pilon__uns LN:611 skipping SAM header line: @SQ SN:contig_5540_pilon__uns LN:4720 skipping SAM header line: @SQ SN:contig_5562_pilon__uns LN:5452 skipping SAM header line: @SQ SN:contig_5564_pilon__uns LN:702 skipping SAM header line: @SQ SN:contig_5565_pilon__uns LN:174561 skipping SAM header line: @SQ SN:contig_5571_pilon__uns LN:106782 skipping SAM header line: @SQ SN:contig_5583_pilon__uns LN:3138 skipping SAM header line: @SQ SN:contig_5586_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_5587_pilon__uns LN:104032 skipping SAM header line: @SQ SN:contig_5589_pilon__uns LN:24769 skipping SAM header line: @SQ SN:contig_5590_pilon__uns LN:16952 skipping SAM header line: @SQ SN:contig_5593_pilon__uns LN:6210 skipping SAM header line: @SQ SN:contig_5594_pilon__uns LN:22206 skipping SAM header line: @SQ SN:contig_5596_pilon__uns LN:107825 skipping SAM header line: @SQ SN:contig_5603_pilon__uns LN:951 skipping SAM header line: @SQ SN:contig_5606_pilon__uns LN:938 skipping SAM header line: @SQ SN:contig_5609_pilon__uns LN:45291 skipping SAM header line: @SQ SN:contig_5620_pilon__uns LN:10437 skipping SAM header line: @SQ SN:contig_5623_pilon__uns LN:61354 skipping SAM header line: @SQ SN:contig_5630_pilon__uns LN:27357 skipping SAM header line: @SQ SN:contig_5631_pilon__uns LN:2496 skipping SAM header line: @SQ SN:contig_5634_pilon__uns LN:56971 skipping SAM header line: @SQ SN:contig_5637_pilon__uns LN:126125 skipping SAM header line: @SQ SN:contig_5641_pilon__uns LN:750 skipping SAM header line: @SQ SN:contig_5645_pilon__uns LN:2010 skipping SAM header line: @SQ SN:contig_5647_pilon__uns LN:52228 skipping SAM header line: @SQ SN:contig_5649_pilon__uns LN:5086 skipping SAM header line: @SQ SN:contig_564_pilon__uns LN:18162 skipping SAM header line: @SQ SN:contig_5652_pilon__uns LN:3617 skipping SAM header line: @SQ SN:contig_5653_pilon__uns LN:693 skipping SAM header line: @SQ SN:contig_5656_pilon__uns LN:9043 skipping SAM header line: @SQ SN:contig_5657_pilon__uns LN:92710 skipping SAM header line: @SQ SN:contig_5658_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_5669_pilon__uns LN:222 skipping SAM header line: @SQ SN:contig_5676_pilon__uns LN:7689 skipping SAM header line: @SQ SN:contig_5678_pilon__uns LN:6422 skipping SAM header line: @SQ SN:contig_5679_pilon__uns LN:50216 skipping SAM header line: @SQ SN:contig_567_pilon__uns LN:1351 skipping SAM header line: @SQ SN:contig_5681_pilon__uns LN:4961 skipping SAM header line: @SQ SN:contig_5688_pilon__uns LN:58831 skipping SAM header line: @SQ SN:contig_5689_pilon__uns LN:11544 skipping SAM header line: @SQ SN:contig_5693_pilon__uns LN:468 skipping SAM header line: @SQ SN:contig_5696_pilon__uns LN:51080 skipping SAM header line: @SQ SN:contig_5706_pilon__uns LN:618 skipping SAM header line: @SQ SN:contig_5708_pilon__uns LN:32621 skipping SAM header line: @SQ SN:contig_5713_pilon__uns LN:223466 skipping SAM header line: @SQ SN:contig_5714_pilon__uns LN:76167 skipping SAM header line: @SQ SN:contig_5715_pilon__uns LN:105358 skipping SAM header line: @SQ SN:contig_5717_pilon__uns LN:38050 skipping SAM header line: @SQ SN:contig_5718_pilon__uns LN:29234 skipping SAM header line: @SQ SN:contig_5719_pilon__uns LN:2335 skipping SAM header line: @SQ SN:contig_5729_pilon__uns LN:5345 skipping SAM header line: @SQ SN:contig_572_pilon__uns LN:24910 skipping SAM header line: @SQ SN:contig_5736_pilon__uns LN:77140 skipping SAM header line: @SQ SN:contig_5742_pilon__uns LN:4619 skipping SAM header line: @SQ SN:contig_5746_pilon__uns LN:102177 skipping SAM header line: @SQ SN:contig_5748_pilon__uns LN:204842 skipping SAM header line: @SQ SN:contig_574_pilon__uns LN:10892 skipping SAM header line: @SQ SN:contig_5751_pilon__uns LN:14154 skipping SAM header line: @SQ SN:contig_5752_pilon__uns LN:3408 skipping SAM header line: @SQ SN:contig_5756_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_5758_pilon__uns LN:75221 skipping SAM header line: @SQ SN:contig_5765_pilon__uns LN:116927 skipping SAM header line: @SQ SN:contig_5768_pilon__uns LN:11798 skipping SAM header line: @SQ SN:contig_5773_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_5775_pilon__uns LN:5339 skipping SAM header line: @SQ SN:contig_5777_pilon__uns LN:2556 skipping SAM header line: @SQ SN:contig_5778_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_5782_pilon__uns LN:14978 skipping SAM header line: @SQ SN:contig_5784_pilon__uns LN:53594 skipping SAM header line: @SQ SN:contig_5791_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_5792_pilon__uns LN:664 skipping SAM header line: @SQ SN:contig_5793_pilon__uns LN:15568 skipping SAM header line: @SQ SN:contig_5794_pilon__uns LN:1686 skipping SAM header line: @SQ SN:contig_5796_pilon__uns LN:66966 skipping SAM header line: @SQ SN:contig_5799_pilon__uns LN:25744 skipping SAM header line: @SQ SN:contig_579_pilon__uns LN:5005 skipping SAM header line: @SQ SN:contig_5800_pilon__uns LN:13249 skipping SAM header line: @SQ SN:contig_5801_pilon__uns LN:9384 skipping SAM header line: @SQ SN:contig_5802_pilon__uns LN:122422 skipping SAM header line: @SQ SN:contig_5803_pilon__uns LN:23610 skipping SAM header line: @SQ SN:contig_580_pilon__uns LN:847 skipping SAM header line: @SQ SN:contig_5812_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_5813_pilon__uns LN:3327 skipping SAM header line: @SQ SN:contig_5818_pilon__uns LN:15565 skipping SAM header line: @SQ SN:contig_5819_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_581_pilon__uns LN:2643 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_1__uns LN:43313 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_5824_pilon___frag_3__uns LN:18760 skipping SAM header line: @SQ SN:contig_5825_pilon__uns LN:4282 skipping SAM header line: @SQ SN:contig_5828_pilon__uns LN:112721 skipping SAM header line: @SQ SN:contig_5829_pilon__uns LN:100643 skipping SAM header line: @SQ SN:contig_5831_pilon__uns LN:2144 skipping SAM header line: @SQ SN:contig_5833_pilon__uns LN:99663 skipping SAM header line: @SQ SN:contig_5834_pilon__uns LN:2355 skipping SAM header line: @SQ SN:contig_5835_pilon__uns LN:429 skipping SAM header line: @SQ SN:contig_5844_pilon__uns LN:45950 skipping SAM header line: @SQ SN:contig_5845_pilon__uns LN:46947 skipping SAM header line: @SQ SN:contig_5846_pilon__uns LN:70873 skipping SAM header line: @SQ SN:contig_5848_pilon__uns LN:8228 skipping SAM header line: @SQ SN:contig_5849_pilon__uns LN:57519 skipping SAM header line: @SQ SN:contig_5851_pilon__uns LN:7026 skipping SAM header line: @SQ SN:contig_5854_pilon__uns LN:78203 skipping SAM header line: @SQ SN:contig_5856_pilon__uns LN:565 skipping SAM header line: @SQ SN:contig_5858_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_585_pilon__uns LN:106065 skipping SAM header line: @SQ SN:contig_5861_pilon__uns LN:3076 skipping SAM header line: @SQ SN:contig_5865_pilon__uns LN:767 skipping SAM header line: @SQ SN:contig_5867_pilon__uns LN:1843 skipping SAM header line: @SQ SN:contig_5873_pilon__uns LN:93917 skipping SAM header line: @SQ SN:contig_5877_pilon__uns LN:3886 skipping SAM header line: @SQ SN:contig_5878_pilon__uns LN:902 skipping SAM header line: @SQ SN:contig_5883_pilon__uns LN:4709 skipping SAM header line: @SQ SN:contig_5885_pilon__uns LN:1502 skipping SAM header line: @SQ SN:contig_5886_pilon__uns LN:724 skipping SAM header line: @SQ SN:contig_5889_pilon__uns LN:7760 skipping SAM header line: @SQ SN:contig_5890_pilon__uns LN:745 skipping SAM header line: @SQ SN:contig_5892_pilon__uns LN:107109 skipping SAM header line: @SQ SN:contig_5894_pilon__uns LN:40245 skipping SAM header line: @SQ SN:contig_5896_pilon__uns LN:109296 skipping SAM header line: @SQ SN:contig_5897_pilon__uns LN:3209 skipping SAM header line: @SQ SN:contig_5899_pilon__uns LN:604 skipping SAM header line: @SQ SN:contig_58_pilon__uns LN:45492 skipping SAM header line: @SQ SN:contig_5900_pilon__uns LN:1907 skipping SAM header line: @SQ SN:contig_5904_pilon__uns LN:20115 skipping SAM header line: @SQ SN:contig_5906_pilon__uns LN:4044 skipping SAM header line: @SQ SN:contig_590_pilon__uns LN:37829 skipping SAM header line: @SQ SN:contig_5911_pilon__uns LN:431 skipping SAM header line: @SQ SN:contig_5914_pilon__uns LN:1822 skipping SAM header line: @SQ SN:contig_5916_pilon__uns LN:67259 skipping SAM header line: @SQ SN:contig_5918_pilon__uns LN:67361 skipping SAM header line: @SQ SN:contig_5919_pilon__uns LN:5308 skipping SAM header line: @SQ SN:contig_591_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_5923_pilon__uns LN:6701 skipping SAM header line: @SQ SN:contig_5924_pilon__uns LN:133566 skipping SAM header line: @SQ SN:contig_5926_pilon__uns LN:2546 skipping SAM header line: @SQ SN:contig_5928_pilon__uns LN:3105 skipping SAM header line: @SQ SN:contig_592_pilon__uns LN:52641 skipping SAM header line: @SQ SN:contig_5931_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_5932_pilon__uns LN:46758 skipping SAM header line: @SQ SN:contig_5937_pilon__uns LN:151053 skipping SAM header line: @SQ SN:contig_5940_pilon__uns LN:252515 skipping SAM header line: @SQ SN:contig_5942_pilon__uns LN:2231 skipping SAM header line: @SQ SN:contig_5947_pilon__uns LN:2356 skipping SAM header line: @SQ SN:contig_5948_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5958_pilon__uns LN:1323 skipping SAM header line: @SQ SN:contig_5964_pilon__uns LN:30040 skipping SAM header line: @SQ SN:contig_5967_pilon__uns LN:1125 skipping SAM header line: @SQ SN:contig_596_pilon__uns LN:3064 skipping SAM header line: @SQ SN:contig_5971_pilon__uns LN:275285 skipping SAM header line: @SQ SN:contig_5974_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_5975_pilon__uns LN:918 skipping SAM header line: @SQ SN:contig_5977_pilon__uns LN:20272 skipping SAM header line: @SQ SN:contig_5981_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_5_pilon__uns LN:2133 skipping SAM header line: @SQ SN:contig_6001_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_6003_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_6004_pilon__uns LN:217 skipping SAM header line: @SQ SN:contig_600_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6024_pilon__uns LN:5125 skipping SAM header line: @SQ SN:contig_6029_pilon__uns LN:4022 skipping SAM header line: @SQ SN:contig_6030_pilon__uns LN:5323 skipping SAM header line: @SQ SN:contig_6031_pilon__uns LN:9984 skipping SAM header line: @SQ SN:contig_6034_pilon__uns LN:432 skipping SAM header line: @SQ SN:contig_6036_pilon__uns LN:2295 skipping SAM header line: @SQ SN:contig_6038_pilon__uns LN:2729 skipping SAM header line: @SQ SN:contig_6040_pilon__uns LN:68854 skipping SAM header line: @SQ SN:contig_6042_pilon__uns LN:4312 skipping SAM header line: @SQ SN:contig_6047_pilon__uns LN:6631 skipping SAM header line: @SQ SN:contig_6048_pilon__uns LN:578 skipping SAM header line: @SQ SN:contig_6049_pilon__uns LN:1470 skipping SAM header line: @SQ SN:contig_6051_pilon__uns LN:1609 skipping SAM header line: @SQ SN:contig_6053_pilon__uns LN:14756 skipping SAM header line: @SQ SN:contig_6054_pilon__uns LN:1533 skipping SAM header line: @SQ SN:contig_6055_pilon__uns LN:7254 skipping SAM header line: @SQ SN:contig_6059_pilon__uns LN:1219 skipping SAM header line: @SQ SN:contig_6062_pilon__uns LN:2775 skipping SAM header line: @SQ SN:contig_6063_pilon__uns LN:43583 skipping SAM header line: @SQ SN:contig_6064_pilon__uns LN:40366 skipping SAM header line: @SQ SN:contig_6068_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6069_pilon__uns LN:470 skipping SAM header line: @SQ SN:contig_6071_pilon__uns LN:2257 skipping SAM header line: @SQ SN:contig_6074_pilon__uns LN:1786 skipping SAM header line: @SQ SN:contig_6075_pilon__uns LN:3817 skipping SAM header line: @SQ SN:contig_6076_pilon__uns LN:14788 skipping SAM header line: @SQ SN:contig_6078_pilon__uns LN:913 skipping SAM header line: @SQ SN:contig_6079_pilon__uns LN:1205 skipping SAM header line: @SQ SN:contig_607_pilon___frag_1__uns LN:155950 skipping SAM header line: @SQ SN:contig_607_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6085_pilon__uns LN:1158 skipping SAM header line: @SQ SN:contig_6087_pilon__uns LN:17170 skipping SAM header line: @SQ SN:contig_6088_pilon__uns LN:1000 skipping SAM header line: @SQ SN:contig_6092_pilon__uns LN:40104 skipping SAM header line: @SQ SN:contig_6095_pilon__uns LN:1809 skipping SAM header line: @SQ SN:contig_6096_pilon__uns LN:5305 skipping SAM header line: @SQ SN:contig_6099_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_6101_pilon__uns LN:7217 skipping SAM header line: @SQ SN:contig_6108_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_6109_pilon__uns LN:706 skipping SAM header line: @SQ SN:contig_6110_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6115_pilon__uns LN:1952 skipping SAM header line: @SQ SN:contig_6117_pilon__uns LN:517 skipping SAM header line: @SQ SN:contig_6119_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_611_pilon__uns LN:134846 skipping SAM header line: @SQ SN:contig_6121_pilon__uns LN:61081 skipping SAM header line: @SQ SN:contig_6128_pilon__uns LN:4289 skipping SAM header line: @SQ SN:contig_6131_pilon__uns LN:4347 skipping SAM header line: @SQ SN:contig_6135_pilon__uns LN:4955 skipping SAM header line: @SQ SN:contig_6136_pilon__uns LN:110244 skipping SAM header line: @SQ SN:contig_6137_pilon__uns LN:5640 skipping SAM header line: @SQ SN:contig_6139_pilon__uns LN:4078 skipping SAM header line: @SQ SN:contig_613_pilon__uns LN:648 skipping SAM header line: @SQ SN:contig_6143_pilon__uns LN:8803 skipping SAM header line: @SQ SN:contig_6146_pilon__uns LN:7251 skipping SAM header line: @SQ SN:contig_6147_pilon__uns LN:1185 skipping SAM header line: @SQ SN:contig_614_pilon__uns LN:2722 skipping SAM header line: @SQ SN:contig_6151_pilon__uns LN:33636 skipping SAM header line: @SQ SN:contig_6154_pilon__uns LN:15186 skipping SAM header line: @SQ SN:contig_6156_pilon__uns LN:549 skipping SAM header line: @SQ SN:contig_6157_pilon__uns LN:8382 skipping SAM header line: @SQ SN:contig_6162_pilon__uns LN:1437 skipping SAM header line: @SQ SN:contig_6163_pilon__uns LN:28520 skipping SAM header line: @SQ SN:contig_6164_pilon__uns LN:5212 skipping SAM header line: @SQ SN:contig_6165_pilon__uns LN:463 skipping SAM header line: @SQ SN:contig_6167_pilon__uns LN:2000 skipping SAM header line: @SQ SN:contig_6168_pilon__uns LN:2966 skipping SAM header line: @SQ SN:contig_6175_pilon__uns LN:70660 skipping SAM header line: @SQ SN:contig_618_pilon__uns LN:4725 skipping SAM header line: @SQ SN:contig_6190_pilon__uns LN:991 skipping SAM header line: @SQ SN:contig_6194_pilon__uns LN:707 skipping SAM header line: @SQ SN:contig_6195_pilon__uns LN:2517 skipping SAM header line: @SQ SN:contig_6197_pilon__uns LN:2789 skipping SAM header line: @SQ SN:contig_61_pilon__uns LN:46704 skipping SAM header line: @SQ SN:contig_6202_pilon__uns LN:580 skipping SAM header line: @SQ SN:contig_6206_pilon__uns LN:4531 skipping SAM header line: @SQ SN:contig_620_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_6210_pilon__uns LN:2238 skipping SAM header line: @SQ SN:contig_6212_pilon__uns LN:2198 skipping SAM header line: @SQ SN:contig_6219_pilon__uns LN:4189 skipping SAM header line: @SQ SN:contig_6224_pilon__uns LN:7617 skipping SAM header line: @SQ SN:contig_6232_pilon__uns LN:312 skipping SAM header line: @SQ SN:contig_623_pilon__uns LN:14271 skipping SAM header line: @SQ SN:contig_6240_pilon__uns LN:1795 skipping SAM header line: @SQ SN:contig_6242_pilon__uns LN:1715 skipping SAM header line: @SQ SN:contig_6251_pilon__uns LN:566 skipping SAM header line: @SQ SN:contig_6255_pilon__uns LN:2237 skipping SAM header line: @SQ SN:contig_6256_pilon__uns LN:1152 skipping SAM header line: @SQ SN:contig_6257_pilon__uns LN:224 skipping SAM header line: @SQ SN:contig_6258_pilon__uns LN:49002 skipping SAM header line: @SQ SN:contig_6259_pilon__uns LN:489 skipping SAM header line: @SQ SN:contig_6260_pilon__uns LN:2452 skipping SAM header line: @SQ SN:contig_6267_pilon__uns LN:91820 skipping SAM header line: @SQ SN:contig_6269_pilon__uns LN:26328 skipping SAM header line: @SQ SN:contig_626_pilon__uns LN:27333 skipping SAM header line: @SQ SN:contig_6270_pilon__uns LN:1890 skipping SAM header line: @SQ SN:contig_6272_pilon__uns LN:1326 skipping SAM header line: @SQ SN:contig_6273_pilon__uns LN:1483 skipping SAM header line: @SQ SN:contig_627_pilon__uns LN:3452 skipping SAM header line: @SQ SN:contig_6282_pilon__uns LN:1896 skipping SAM header line: @SQ SN:contig_6284_pilon__uns LN:14920 skipping SAM header line: @SQ SN:contig_6289_pilon__uns LN:3010 skipping SAM header line: @SQ SN:contig_6291_pilon__uns LN:1488 skipping SAM header line: @SQ SN:contig_6293_pilon__uns LN:2602 skipping SAM header line: @SQ SN:contig_6297_pilon__uns LN:68764 skipping SAM header line: @SQ SN:contig_6298_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_62_pilon__uns LN:54625 skipping SAM header line: @SQ SN:contig_6303_pilon__uns LN:4039 skipping SAM header line: @SQ SN:contig_6313_pilon__uns LN:49212 skipping SAM header line: @SQ SN:contig_6314_pilon__uns LN:68895 skipping SAM header line: @SQ SN:contig_6322_pilon__uns LN:634 skipping SAM header line: @SQ SN:contig_6323_pilon__uns LN:7866 skipping SAM header line: @SQ SN:contig_6327_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_6334_pilon__uns LN:41473 skipping SAM header line: @SQ SN:contig_6336_pilon__uns LN:1775 skipping SAM header line: @SQ SN:contig_6338_pilon__uns LN:1486 skipping SAM header line: @SQ SN:contig_633_pilon__uns LN:330664 skipping SAM header line: @SQ SN:contig_6340_pilon__uns LN:15845 skipping SAM header line: @SQ SN:contig_6347_pilon__uns LN:19473 skipping SAM header line: @SQ SN:contig_6353_pilon__uns LN:552 skipping SAM header line: @SQ SN:contig_6356_pilon__uns LN:487 skipping SAM header line: @SQ SN:contig_6362_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_6363_pilon__uns LN:161540 skipping SAM header line: @SQ SN:contig_6364_pilon__uns LN:11937 skipping SAM header line: @SQ SN:contig_6365_pilon__uns LN:39400 skipping SAM header line: @SQ SN:contig_6368_pilon__uns LN:3279 skipping SAM header line: @SQ SN:contig_6369_pilon__uns LN:1930 skipping SAM header line: @SQ SN:contig_6371_pilon__uns LN:955 skipping SAM header line: @SQ SN:contig_6375_pilon__uns LN:1356 skipping SAM header line: @SQ SN:contig_6377_pilon__uns LN:780 skipping SAM header line: @SQ SN:contig_6385_pilon__uns LN:1387 skipping SAM header line: @SQ SN:contig_6388_pilon__uns LN:598 skipping SAM header line: @SQ SN:contig_6393_pilon__uns LN:1959 skipping SAM header line: @SQ SN:contig_6402_pilon__uns LN:1570 skipping SAM header line: @SQ SN:contig_6404_pilon__uns LN:31797 skipping SAM header line: @SQ SN:contig_6405_pilon__uns LN:3046 skipping SAM header line: @SQ SN:contig_6407_pilon__uns LN:44017 skipping SAM header line: @SQ SN:contig_6408_pilon__uns LN:40485 skipping SAM header line: @SQ SN:contig_6410_pilon__uns LN:773 skipping SAM header line: @SQ SN:contig_6411_pilon__uns LN:3284 skipping SAM header line: @SQ SN:contig_6413_pilon__uns LN:4992 skipping SAM header line: @SQ SN:contig_6420_pilon__uns LN:1093 skipping SAM header line: @SQ SN:contig_6425_pilon__uns LN:7313 skipping SAM header line: @SQ SN:contig_6427_pilon__uns LN:17357 skipping SAM header line: @SQ SN:contig_642_pilon__uns LN:96367 skipping SAM header line: @SQ SN:contig_6430_pilon__uns LN:82598 skipping SAM header line: @SQ SN:contig_6432_pilon__uns LN:1137 skipping SAM header line: @SQ SN:contig_6434_pilon__uns LN:3863 skipping SAM header line: @SQ SN:contig_6436_pilon__uns LN:2214 skipping SAM header line: @SQ SN:contig_643_pilon__uns LN:42254 skipping SAM header line: @SQ SN:contig_6440_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_6444_pilon__uns LN:25884 skipping SAM header line: @SQ SN:contig_6445_pilon__uns LN:19577 skipping SAM header line: @SQ SN:contig_6447_pilon__uns LN:609 skipping SAM header line: @SQ SN:contig_6449_pilon__uns LN:1007 skipping SAM header line: @SQ SN:contig_644_pilon__uns LN:45218 skipping SAM header line: @SQ SN:contig_6451_pilon__uns LN:4813 skipping SAM header line: @SQ SN:contig_6452_pilon__uns LN:4692 skipping SAM header line: @SQ SN:contig_6459_pilon__uns LN:1776 skipping SAM header line: @SQ SN:contig_6461_pilon__uns LN:4682 skipping SAM header line: @SQ SN:contig_6462_pilon__uns LN:8184 skipping SAM header line: @SQ SN:contig_6469_pilon__uns LN:1299 skipping SAM header line: @SQ SN:contig_6470_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_6471_pilon__uns LN:891 skipping SAM header line: @SQ SN:contig_6477_pilon__uns LN:1681 skipping SAM header line: @SQ SN:contig_6479_pilon__uns LN:4937 skipping SAM header line: @SQ SN:contig_6480_pilon__uns LN:916 skipping SAM header line: @SQ SN:contig_6494_pilon__uns LN:1145 skipping SAM header line: @SQ SN:contig_6496_pilon__uns LN:1937 skipping SAM header line: @SQ SN:contig_6498_pilon__uns LN:3267 skipping SAM header line: @SQ SN:contig_64_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_64_pilon___frag_3__uns LN:48597 skipping SAM header line: @SQ SN:contig_6501_pilon__uns LN:1635 skipping SAM header line: @SQ SN:contig_6503_pilon__uns LN:2410 skipping SAM header line: @SQ SN:contig_6505_pilon__uns LN:1373 skipping SAM header line: @SQ SN:contig_6514_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_6515_pilon__uns LN:1146 skipping SAM header line: @SQ SN:contig_6518_pilon__uns LN:39163 skipping SAM header line: @SQ SN:contig_6529_pilon__uns LN:8513 skipping SAM header line: @SQ SN:contig_652_pilon__uns LN:22131 skipping SAM header line: @SQ SN:contig_6536_pilon__uns LN:21283 skipping SAM header line: @SQ SN:contig_6537_pilon__uns LN:513 skipping SAM header line: @SQ SN:contig_6540_pilon__uns LN:2209 skipping SAM header line: @SQ SN:contig_6541_pilon__uns LN:100062 skipping SAM header line: @SQ SN:contig_6544_pilon__uns LN:1126 skipping SAM header line: @SQ SN:contig_6547_pilon__uns LN:685 skipping SAM header line: @SQ SN:contig_6549_pilon__uns LN:2118 skipping SAM header line: @SQ SN:contig_6551_pilon__uns LN:134887 skipping SAM header line: @SQ SN:contig_655_pilon__uns LN:779 skipping SAM header line: @SQ SN:contig_6562_pilon__uns LN:139326 skipping SAM header line: @SQ SN:contig_6565_pilon__uns LN:881 skipping SAM header line: @SQ SN:contig_6568_pilon__uns LN:5316 skipping SAM header line: @SQ SN:contig_656_pilon__uns LN:30227 skipping SAM header line: @SQ SN:contig_6576_pilon__uns LN:10231 skipping SAM header line: @SQ SN:contig_6577_pilon__uns LN:2098 skipping SAM header line: @SQ SN:contig_6579_pilon__uns LN:379 skipping SAM header line: @SQ SN:contig_6581_pilon__uns LN:50426 skipping SAM header line: @SQ SN:contig_6588_pilon__uns LN:9989 skipping SAM header line: @SQ SN:contig_6590_pilon__uns LN:5187 skipping SAM header line: @SQ SN:contig_6592_pilon__uns LN:581 skipping SAM header line: @SQ SN:contig_6597_pilon__uns LN:12122 skipping SAM header line: @SQ SN:contig_6606_pilon__uns LN:673 skipping SAM header line: @SQ SN:contig_6609_pilon__uns LN:1124 skipping SAM header line: @SQ SN:contig_6615_pilon__uns LN:57129 skipping SAM header line: @SQ SN:contig_6617_pilon__uns LN:1562 skipping SAM header line: @SQ SN:contig_6619_pilon__uns LN:64971 skipping SAM header line: @SQ SN:contig_661_pilon__uns LN:67949 skipping SAM header line: @SQ SN:contig_6622_pilon__uns LN:35946 skipping SAM header line: @SQ SN:contig_6629_pilon__uns LN:2137 skipping SAM header line: @SQ SN:contig_6630_pilon__uns LN:4442 skipping SAM header line: @SQ SN:contig_6637_pilon__uns LN:66106 skipping SAM header line: @SQ SN:contig_6638_pilon__uns LN:992 skipping SAM header line: @SQ SN:contig_6647_pilon__uns LN:4176 skipping SAM header line: @SQ SN:contig_6652_pilon__uns LN:61069 skipping SAM header line: @SQ SN:contig_6657_pilon__uns LN:506 skipping SAM header line: @SQ SN:contig_6660_pilon__uns LN:457 skipping SAM header line: @SQ SN:contig_6661_pilon__uns LN:990 skipping SAM header line: @SQ SN:contig_6664_pilon__uns LN:2033 skipping SAM header line: @SQ SN:contig_6665_pilon__uns LN:35338 skipping SAM header line: @SQ SN:contig_6667_pilon__uns LN:207078 skipping SAM header line: @SQ SN:contig_6670_pilon__uns LN:49329 skipping SAM header line: @SQ SN:contig_6671_pilon__uns LN:1810 skipping SAM header line: @SQ SN:contig_6672_pilon__uns LN:3166 skipping SAM header line: @SQ SN:contig_6673_pilon__uns LN:2456 skipping SAM header line: @SQ SN:contig_6675_pilon__uns LN:1003 skipping SAM header line: @SQ SN:contig_6677_pilon__uns LN:1920 skipping SAM header line: @SQ SN:contig_6680_pilon__uns LN:16586 skipping SAM header line: @SQ SN:contig_6683_pilon__uns LN:3838 skipping SAM header line: @SQ SN:contig_6687_pilon__uns LN:8573 skipping SAM header line: @SQ SN:contig_668_pilon__uns LN:9405 skipping SAM header line: @SQ SN:contig_6697_pilon__uns LN:5701 skipping SAM header line: @SQ SN:contig_6698_pilon__uns LN:79361 skipping SAM header line: @SQ SN:contig_669_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_6701_pilon__uns LN:1031 skipping SAM header line: @SQ SN:contig_6704_pilon__uns LN:643 skipping SAM header line: @SQ SN:contig_6709_pilon__uns LN:2446 skipping SAM header line: @SQ SN:contig_670_pilon__uns LN:14837 skipping SAM header line: @SQ SN:contig_6715_pilon__uns LN:5354 skipping SAM header line: @SQ SN:contig_6719_pilon__uns LN:1892 skipping SAM header line: @SQ SN:contig_6721_pilon__uns LN:14594 skipping SAM header line: @SQ SN:contig_6725_pilon__uns LN:840 skipping SAM header line: @SQ SN:contig_6733_pilon__uns LN:1628 skipping SAM header line: @SQ SN:contig_6735_pilon__uns LN:733 skipping SAM header line: @SQ SN:contig_6739_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_6750_pilon__uns LN:311232 skipping SAM header line: @SQ SN:contig_6753_pilon__uns LN:308 skipping SAM header line: @SQ SN:contig_675_pilon__uns LN:88740 skipping SAM header line: @SQ SN:contig_6760_pilon__uns LN:1218 skipping SAM header line: @SQ SN:contig_6761_pilon__uns LN:30162 skipping SAM header line: @SQ SN:contig_6764_pilon__uns LN:146866 skipping SAM header line: @SQ SN:contig_6768_pilon__uns LN:675 skipping SAM header line: @SQ SN:contig_6770_pilon__uns LN:9965 skipping SAM header line: @SQ SN:contig_6772_pilon__uns LN:645 skipping SAM header line: @SQ SN:contig_6779_pilon__uns LN:49655 skipping SAM header line: @SQ SN:contig_6780_pilon__uns LN:887 skipping SAM header line: @SQ SN:contig_6787_pilon__uns LN:3896 skipping SAM header line: @SQ SN:contig_6793_pilon__uns LN:1312 skipping SAM header line: @SQ SN:contig_6796_pilon__uns LN:3627 skipping SAM header line: @SQ SN:contig_6799_pilon__uns LN:1656 skipping SAM header line: @SQ SN:contig_679_pilon___frag_1__uns LN:151716 skipping SAM header line: @SQ SN:contig_679_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_679_pilon___frag_3__uns LN:110217 skipping SAM header line: @SQ SN:contig_6802_pilon__uns LN:29257 skipping SAM header line: @SQ SN:contig_6807_pilon__uns LN:142355 skipping SAM header line: @SQ SN:contig_680_pilon__uns LN:7332 skipping SAM header line: @SQ SN:contig_6811_pilon__uns LN:5851 skipping SAM header line: @SQ SN:contig_6813_pilon__uns LN:4770 skipping SAM header line: @SQ SN:contig_6822_pilon__uns LN:93278 skipping SAM header line: @SQ SN:contig_6823_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_6824_pilon__uns LN:14485 skipping SAM header line: @SQ SN:contig_6826_pilon__uns LN:535 skipping SAM header line: @SQ SN:contig_6829_pilon__uns LN:414 skipping SAM header line: @SQ SN:contig_6833_pilon__uns LN:1296 skipping SAM header line: @SQ SN:contig_6836_pilon__uns LN:2955 skipping SAM header line: @SQ SN:contig_6841_pilon__uns LN:627 skipping SAM header line: @SQ SN:contig_6843_pilon__uns LN:556 skipping SAM header line: @SQ SN:contig_6844_pilon__uns LN:932 skipping SAM header line: @SQ SN:contig_6845_pilon__uns LN:3503 skipping SAM header line: @SQ SN:contig_684_pilon__uns LN:2634 skipping SAM header line: @SQ SN:contig_6855_pilon__uns LN:888 skipping SAM header line: @SQ SN:contig_6858_pilon__uns LN:2639 skipping SAM header line: @SQ SN:contig_6859_pilon__uns LN:1190 skipping SAM header line: @SQ SN:contig_6860_pilon__uns LN:37910 skipping SAM header line: @SQ SN:contig_6861_pilon__uns LN:5823 skipping SAM header line: @SQ SN:contig_6865_pilon__uns LN:11078 skipping SAM header line: @SQ SN:contig_6866_pilon__uns LN:3743 skipping SAM header line: @SQ SN:contig_6869_pilon__uns LN:9568 skipping SAM header line: @SQ SN:contig_686_pilon__uns LN:75108 skipping SAM header line: @SQ SN:contig_6870_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6872_pilon__uns LN:1805 skipping SAM header line: @SQ SN:contig_6875_pilon__uns LN:845 skipping SAM header line: @SQ SN:contig_6876_pilon__uns LN:101206 skipping SAM header line: @SQ SN:contig_6885_pilon__uns LN:525 skipping SAM header line: @SQ SN:contig_6886_pilon__uns LN:10454 skipping SAM header line: @SQ SN:contig_6891_pilon__uns LN:22078 skipping SAM header line: @SQ SN:contig_6892_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_6897_pilon__uns LN:7860 skipping SAM header line: @SQ SN:contig_6898_pilon__uns LN:9711 skipping SAM header line: @SQ SN:contig_6899_pilon__uns LN:1256 skipping SAM header line: @SQ SN:contig_689_pilon__uns LN:8842 skipping SAM header line: @SQ SN:contig_6901_pilon__uns LN:88361 skipping SAM header line: @SQ SN:contig_6905_pilon__uns LN:11970 skipping SAM header line: @SQ SN:contig_6906_pilon__uns LN:32253 skipping SAM header line: @SQ SN:contig_6913_pilon__uns LN:112180 skipping SAM header line: @SQ SN:contig_6915_pilon__uns LN:15319 skipping SAM header line: @SQ SN:contig_6916_pilon__uns LN:35649 skipping SAM header line: @SQ SN:contig_6918_pilon__uns LN:55057 skipping SAM header line: @SQ SN:contig_6919_pilon__uns LN:864 skipping SAM header line: @SQ SN:contig_6921_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_6922_pilon__uns LN:5073 skipping SAM header line: @SQ SN:contig_692_pilon__uns LN:268446 skipping SAM header line: @SQ SN:contig_6932_pilon__uns LN:190962 skipping SAM header line: @SQ SN:contig_6939_pilon__uns LN:7350 skipping SAM header line: @SQ SN:contig_6949_pilon__uns LN:2797 skipping SAM header line: @SQ SN:contig_6950_pilon__uns LN:545 skipping SAM header line: @SQ SN:contig_6958_pilon__uns LN:1685 skipping SAM header line: @SQ SN:contig_6959_pilon__uns LN:801 skipping SAM header line: @SQ SN:contig_6966_pilon__uns LN:842 skipping SAM header line: @SQ SN:contig_6967_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_6970_pilon__uns LN:1649 skipping SAM header line: @SQ SN:contig_6974_pilon__uns LN:4203 skipping SAM header line: @SQ SN:contig_6976_pilon__uns LN:1731 skipping SAM header line: @SQ SN:contig_6979_pilon__uns LN:10186 skipping SAM header line: @SQ SN:contig_6982_pilon__uns LN:6141 skipping SAM header line: @SQ SN:contig_6983_pilon__uns LN:2269 skipping SAM header line: @SQ SN:contig_6987_pilon__uns LN:72055 skipping SAM header line: @SQ SN:contig_6998_pilon__uns LN:825 skipping SAM header line: @SQ SN:contig_7001_pilon__uns LN:4244 skipping SAM header line: @SQ SN:contig_7003_pilon__uns LN:3324 skipping SAM header line: @SQ SN:contig_7004_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_7006_pilon__uns LN:67105 skipping SAM header line: @SQ SN:contig_7008_pilon__uns LN:2246 skipping SAM header line: @SQ SN:contig_7011_pilon__uns LN:1388 skipping SAM header line: @SQ SN:contig_7013_pilon__uns LN:98894 skipping SAM header line: @SQ SN:contig_701_pilon__uns LN:1436 skipping SAM header line: @SQ SN:contig_7021_pilon__uns LN:2573 skipping SAM header line: @SQ SN:contig_7023_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7027_pilon__uns LN:10932 skipping SAM header line: @SQ SN:contig_7028_pilon__uns LN:1526 skipping SAM header line: @SQ SN:contig_7029_pilon__uns LN:351 skipping SAM header line: @SQ SN:contig_702_pilon__uns LN:3929 skipping SAM header line: @SQ SN:contig_7031_pilon__uns LN:21065 skipping SAM header line: @SQ SN:contig_7032_pilon__uns LN:528 skipping SAM header line: @SQ SN:contig_7035_pilon__uns LN:2130 skipping SAM header line: @SQ SN:contig_7044_pilon__uns LN:211 skipping SAM header line: @SQ SN:contig_7052_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_7058_pilon__uns LN:1961 skipping SAM header line: @SQ SN:contig_7064_pilon__uns LN:43589 skipping SAM header line: @SQ SN:contig_7067_pilon__uns LN:669 skipping SAM header line: @SQ SN:contig_7070_pilon__uns LN:39062 skipping SAM header line: @SQ SN:contig_7074_pilon__uns LN:39774 skipping SAM header line: @SQ SN:contig_7075_pilon__uns LN:1069 skipping SAM header line: @SQ SN:contig_7076_pilon__uns LN:34581 skipping SAM header line: @SQ SN:contig_7085_pilon__uns LN:133480 skipping SAM header line: @SQ SN:contig_708_pilon__uns LN:1032 skipping SAM header line: @SQ SN:contig_7090_pilon__uns LN:150333 skipping SAM header line: @SQ SN:contig_7091_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_7094_pilon__uns LN:8783 skipping SAM header line: @SQ SN:contig_709_pilon__uns LN:860 skipping SAM header line: @SQ SN:contig_7105_pilon__uns LN:1931 skipping SAM header line: @SQ SN:contig_7107_pilon__uns LN:1661 skipping SAM header line: @SQ SN:contig_710_pilon__uns LN:8447 skipping SAM header line: @SQ SN:contig_7110_pilon__uns LN:24618 skipping SAM header line: @SQ SN:contig_7111_pilon__uns LN:55941 skipping SAM header line: @SQ SN:contig_7112_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_711_pilon__uns LN:8034 skipping SAM header line: @SQ SN:contig_7120_pilon__uns LN:13544 skipping SAM header line: @SQ SN:contig_7127_pilon__uns LN:79229 skipping SAM header line: @SQ SN:contig_7132_pilon__uns LN:42623 skipping SAM header line: @SQ SN:contig_7133_pilon__uns LN:51766 skipping SAM header line: @SQ SN:contig_7134_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7142_pilon__uns LN:129148 skipping SAM header line: @SQ SN:contig_7144_pilon__uns LN:83109 skipping SAM header line: @SQ SN:contig_7146_pilon__uns LN:33994 skipping SAM header line: @SQ SN:contig_7151_pilon__uns LN:1101 skipping SAM header line: @SQ SN:contig_7153_pilon__uns LN:518 skipping SAM header line: @SQ SN:contig_715_pilon__uns LN:33524 skipping SAM header line: @SQ SN:contig_7162_pilon__uns LN:1307 skipping SAM header line: @SQ SN:contig_7165_pilon__uns LN:1193 skipping SAM header line: @SQ SN:contig_7169_pilon__uns LN:659 skipping SAM header line: @SQ SN:contig_716_pilon__uns LN:11870 skipping SAM header line: @SQ SN:contig_7173_pilon__uns LN:3762 skipping SAM header line: @SQ SN:contig_7174_pilon__uns LN:90829 skipping SAM header line: @SQ SN:contig_7179_pilon__uns LN:21004 skipping SAM header line: @SQ SN:contig_7180_pilon__uns LN:9905 skipping SAM header line: @SQ SN:contig_7181_pilon__uns LN:4076 skipping SAM header line: @SQ SN:contig_7184_pilon__uns LN:71012 skipping SAM header line: @SQ SN:contig_718_pilon__uns LN:35501 skipping SAM header line: @SQ SN:contig_7195_pilon__uns LN:1453 skipping SAM header line: @SQ SN:contig_7201_pilon__uns LN:9938 skipping SAM header line: @SQ SN:contig_7202_pilon__uns LN:28252 skipping SAM header line: @SQ SN:contig_7208_pilon__uns LN:4650 skipping SAM header line: @SQ SN:contig_720_pilon__uns LN:1469 skipping SAM header line: @SQ SN:contig_7210_pilon__uns LN:2225 skipping SAM header line: @SQ SN:contig_7213_pilon__uns LN:59106 skipping SAM header line: @SQ SN:contig_7215_pilon__uns LN:1818 skipping SAM header line: @SQ SN:contig_7219_pilon__uns LN:674 skipping SAM header line: @SQ SN:contig_7221_pilon__uns LN:7837 skipping SAM header line: @SQ SN:contig_7224_pilon__uns LN:5722 skipping SAM header line: @SQ SN:contig_7230_pilon__uns LN:5489 skipping SAM header line: @SQ SN:contig_7235_pilon__uns LN:116013 skipping SAM header line: @SQ SN:contig_7236_pilon__uns LN:1163 skipping SAM header line: @SQ SN:contig_7237_pilon__uns LN:23244 skipping SAM header line: @SQ SN:contig_7239_pilon__uns LN:1658 skipping SAM header line: @SQ SN:contig_7248_pilon__uns LN:19403 skipping SAM header line: @SQ SN:contig_7250_pilon__uns LN:683 skipping SAM header line: @SQ SN:contig_7255_pilon__uns LN:28882 skipping SAM header line: @SQ SN:contig_7269_pilon__uns LN:11930 skipping SAM header line: @SQ SN:contig_726_pilon__uns LN:43230 skipping SAM header line: @SQ SN:contig_7272_pilon__uns LN:72635 skipping SAM header line: @SQ SN:contig_7276_pilon__uns LN:12871 skipping SAM header line: @SQ SN:contig_7278_pilon__uns LN:2360 skipping SAM header line: @SQ SN:contig_7281_pilon__uns LN:1801 skipping SAM header line: @SQ SN:contig_7286_pilon__uns LN:3087 skipping SAM header line: @SQ SN:contig_7293_pilon__uns LN:34230 skipping SAM header line: @SQ SN:contig_7294_pilon__uns LN:23735 skipping SAM header line: @SQ SN:contig_7298_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_7299_pilon__uns LN:691 skipping SAM header line: @SQ SN:contig_7303_pilon__uns LN:4377 skipping SAM header line: @SQ SN:contig_7307_pilon__uns LN:522 skipping SAM header line: @SQ SN:contig_7309_pilon__uns LN:3094 skipping SAM header line: @SQ SN:contig_7314_pilon__uns LN:8499 skipping SAM header line: @SQ SN:contig_7316_pilon__uns LN:19404 skipping SAM header line: @SQ SN:contig_731_pilon__uns LN:63761 skipping SAM header line: @SQ SN:contig_7321_pilon__uns LN:174759 skipping SAM header line: @SQ SN:contig_7322_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7329_pilon__uns LN:1997 skipping SAM header line: @SQ SN:contig_732_pilon__uns LN:127135 skipping SAM header line: @SQ SN:contig_7330_pilon__uns LN:6401 skipping SAM header line: @SQ SN:contig_7339_pilon__uns LN:47300 skipping SAM header line: @SQ SN:contig_733_pilon__uns LN:511 skipping SAM header line: @SQ SN:contig_7342_pilon__uns LN:1217 skipping SAM header line: @SQ SN:contig_7343_pilon__uns LN:6421 skipping SAM header line: @SQ SN:contig_7344_pilon__uns LN:1567 skipping SAM header line: @SQ SN:contig_7345_pilon__uns LN:1030 skipping SAM header line: @SQ SN:contig_7347_pilon__uns LN:7899 skipping SAM header line: @SQ SN:contig_7350_pilon__uns LN:27420 skipping SAM header line: @SQ SN:contig_7353_pilon__uns LN:127147 skipping SAM header line: @SQ SN:contig_7354_pilon__uns LN:1747 skipping SAM header line: @SQ SN:contig_7357_pilon__uns LN:497 skipping SAM header line: @SQ SN:contig_7359_pilon__uns LN:1172 skipping SAM header line: @SQ SN:contig_735_pilon__uns LN:36842 skipping SAM header line: @SQ SN:contig_7361_pilon__uns LN:885 skipping SAM header line: @SQ SN:contig_7365_pilon__uns LN:954 skipping SAM header line: @SQ SN:contig_7366_pilon__uns LN:1806 skipping SAM header line: @SQ SN:contig_7371_pilon__uns LN:13364 skipping SAM header line: @SQ SN:contig_7373_pilon__uns LN:56235 skipping SAM header line: @SQ SN:contig_7374_pilon__uns LN:32978 skipping SAM header line: @SQ SN:contig_7378_pilon__uns LN:139583 skipping SAM header line: @SQ SN:contig_7381_pilon__uns LN:1044 skipping SAM header line: @SQ SN:contig_7384_pilon__uns LN:27289 skipping SAM header line: @SQ SN:contig_7393_pilon__uns LN:15605 skipping SAM header line: @SQ SN:contig_7397_pilon__uns LN:19654 skipping SAM header line: @SQ SN:contig_7401_pilon__uns LN:1011 skipping SAM header line: @SQ SN:contig_7408_pilon__uns LN:13334 skipping SAM header line: @SQ SN:contig_7410_pilon__uns LN:12072 skipping SAM header line: @SQ SN:contig_7412_pilon__uns LN:62924 skipping SAM header line: @SQ SN:contig_7417_pilon__uns LN:2614 skipping SAM header line: @SQ SN:contig_7418_pilon__uns LN:51913 skipping SAM header line: @SQ SN:contig_7426_pilon__uns LN:9753 skipping SAM header line: @SQ SN:contig_7428_pilon__uns LN:87860 skipping SAM header line: @SQ SN:contig_7429_pilon__uns LN:1384 skipping SAM header line: @SQ SN:contig_7430_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_7433_pilon__uns LN:19142 skipping SAM header line: @SQ SN:contig_7434_pilon__uns LN:2091 skipping SAM header line: @SQ SN:contig_7437_pilon__uns LN:14948 skipping SAM header line: @SQ SN:contig_7439_pilon__uns LN:37830 skipping SAM header line: @SQ SN:contig_743_pilon__uns LN:6987 skipping SAM header line: @SQ SN:contig_7442_pilon__uns LN:6265 skipping SAM header line: @SQ SN:contig_7443_pilon__uns LN:2318 skipping SAM header line: @SQ SN:contig_7445_pilon__uns LN:37229 skipping SAM header line: @SQ SN:contig_7446_pilon__uns LN:49728 skipping SAM header line: @SQ SN:contig_7448_pilon__uns LN:54959 skipping SAM header line: @SQ SN:contig_7449_pilon__uns LN:542 skipping SAM header line: @SQ SN:contig_744_pilon__uns LN:2902 skipping SAM header line: @SQ SN:contig_7450_pilon__uns LN:363 skipping SAM header line: @SQ SN:contig_7453_pilon__uns LN:593 skipping SAM header line: @SQ SN:contig_7456_pilon__uns LN:17444 skipping SAM header line: @SQ SN:contig_7459_pilon__uns LN:1403 skipping SAM header line: @SQ SN:contig_7464_pilon__uns LN:165025 skipping SAM header line: @SQ SN:contig_7467_pilon__uns LN:50487 skipping SAM header line: @SQ SN:contig_7474_pilon__uns LN:996 skipping SAM header line: @SQ SN:contig_7476_pilon__uns LN:1265 skipping SAM header line: @SQ SN:contig_7477_pilon__uns LN:83534 skipping SAM header line: @SQ SN:contig_7481_pilon__uns LN:838 skipping SAM header line: @SQ SN:contig_7484_pilon__uns LN:15698 skipping SAM header line: @SQ SN:contig_7487_pilon__uns LN:1846 skipping SAM header line: @SQ SN:contig_7500_pilon__uns LN:53714 skipping SAM header line: @SQ SN:contig_7507_pilon__uns LN:37832 skipping SAM header line: @SQ SN:contig_7509_pilon__uns LN:1188 skipping SAM header line: @SQ SN:contig_750_pilon__uns LN:69689 skipping SAM header line: @SQ SN:contig_7511_pilon__uns LN:762 skipping SAM header line: @SQ SN:contig_7513_pilon__uns LN:5365 skipping SAM header line: @SQ SN:contig_7521_pilon__uns LN:11134 skipping SAM header line: @SQ SN:contig_7525_pilon__uns LN:2066 skipping SAM header line: @SQ SN:contig_7527_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7528_pilon__uns LN:559 skipping SAM header line: @SQ SN:contig_7531_pilon__uns LN:560 skipping SAM header line: @SQ SN:contig_7533_pilon__uns LN:2182 skipping SAM header line: @SQ SN:contig_7538_pilon__uns LN:1593 skipping SAM header line: @SQ SN:contig_753_pilon__uns LN:3897 skipping SAM header line: @SQ SN:contig_7540_pilon__uns LN:811 skipping SAM header line: @SQ SN:contig_7545_pilon__uns LN:2483 skipping SAM header line: @SQ SN:contig_7556_pilon__uns LN:53102 skipping SAM header line: @SQ SN:contig_7560_pilon__uns LN:40512 skipping SAM header line: @SQ SN:contig_7562_pilon__uns LN:215 skipping SAM header line: @SQ SN:contig_7563_pilon__uns LN:713 skipping SAM header line: @SQ SN:contig_7565_pilon__uns LN:90528 skipping SAM header line: @SQ SN:contig_7569_pilon__uns LN:8511 skipping SAM header line: @SQ SN:contig_756_pilon__uns LN:48839 skipping SAM header line: @SQ SN:contig_7571_pilon__uns LN:551 skipping SAM header line: @SQ SN:contig_7572_pilon__uns LN:47023 skipping SAM header line: @SQ SN:contig_7574_pilon__uns LN:246 skipping SAM header line: @SQ SN:contig_7575_pilon__uns LN:3383 skipping SAM header line: @SQ SN:contig_7576_pilon__uns LN:3831 skipping SAM header line: @SQ SN:contig_7577_pilon__uns LN:8146 skipping SAM header line: @SQ SN:contig_7579_pilon__uns LN:43397 skipping SAM header line: @SQ SN:contig_757_pilon__uns LN:166044 skipping SAM header line: @SQ SN:contig_7582_pilon__uns LN:11267 skipping SAM header line: @SQ SN:contig_7584_pilon__uns LN:4632 skipping SAM header line: @SQ SN:contig_7586_pilon__uns LN:3000 skipping SAM header line: @SQ SN:contig_7587_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_7589_pilon__uns LN:1058 skipping SAM header line: @SQ SN:contig_758_pilon__uns LN:25581 skipping SAM header line: @SQ SN:contig_7590_pilon__uns LN:2794 skipping SAM header line: @SQ SN:contig_7591_pilon__uns LN:3485 skipping SAM header line: @SQ SN:contig_7594_pilon__uns LN:882 skipping SAM header line: @SQ SN:contig_7606_pilon__uns LN:1519 skipping SAM header line: @SQ SN:contig_7607_pilon__uns LN:49100 skipping SAM header line: @SQ SN:contig_7609_pilon__uns LN:27912 skipping SAM header line: @SQ SN:contig_7610_pilon__uns LN:701 skipping SAM header line: @SQ SN:contig_7611_pilon__uns LN:5128 skipping SAM header line: @SQ SN:contig_7616_pilon__uns LN:78600 skipping SAM header line: @SQ SN:contig_7619_pilon__uns LN:2434 skipping SAM header line: @SQ SN:contig_7620_pilon__uns LN:1769 skipping SAM header line: @SQ SN:contig_7621_pilon__uns LN:5746 skipping SAM header line: @SQ SN:contig_7629_pilon__uns LN:47076 skipping SAM header line: @SQ SN:contig_762_pilon__uns LN:70088 skipping SAM header line: @SQ SN:contig_7632_pilon__uns LN:3794 skipping SAM header line: @SQ SN:contig_7633_pilon__uns LN:50352 skipping SAM header line: @SQ SN:contig_7643_pilon__uns LN:12243 skipping SAM header line: @SQ SN:contig_7645_pilon__uns LN:15435 skipping SAM header line: @SQ SN:contig_7649_pilon__uns LN:4596 skipping SAM header line: @SQ SN:contig_7655_pilon__uns LN:47185 skipping SAM header line: @SQ SN:contig_765_pilon__uns LN:12179 skipping SAM header line: @SQ SN:contig_7662_pilon__uns LN:7930 skipping SAM header line: @SQ SN:contig_7665_pilon__uns LN:9751 skipping SAM header line: @SQ SN:contig_7668_pilon__uns LN:8835 skipping SAM header line: @SQ SN:contig_7670_pilon__uns LN:20847 skipping SAM header line: @SQ SN:contig_7672_pilon__uns LN:5043 skipping SAM header line: @SQ SN:contig_7677_pilon__uns LN:1831 skipping SAM header line: @SQ SN:contig_7683_pilon__uns LN:2970 skipping SAM header line: @SQ SN:contig_7686_pilon__uns LN:34122 skipping SAM header line: @SQ SN:contig_7687_pilon__uns LN:25885 skipping SAM header line: @SQ SN:contig_7691_pilon__uns LN:7125 skipping SAM header line: @SQ SN:contig_7696_pilon__uns LN:3139 skipping SAM header line: @SQ SN:contig_7699_pilon__uns LN:1056 skipping SAM header line: @SQ SN:contig_7701_pilon__uns LN:1132 skipping SAM header line: @SQ SN:contig_7703_pilon__uns LN:78557 skipping SAM header line: @SQ SN:contig_7708_pilon__uns LN:55250 skipping SAM header line: @SQ SN:contig_7712_pilon__uns LN:2024 skipping SAM header line: @SQ SN:contig_7713_pilon__uns LN:11400 skipping SAM header line: @SQ SN:contig_7714_pilon__uns LN:1057 skipping SAM header line: @SQ SN:contig_7732_pilon__uns LN:1850 skipping SAM header line: @SQ SN:contig_7734_pilon__uns LN:179759 skipping SAM header line: @SQ SN:contig_7735_pilon__uns LN:689 skipping SAM header line: @SQ SN:contig_7737_pilon__uns LN:30690 skipping SAM header line: @SQ SN:contig_7741_pilon__uns LN:25085 skipping SAM header line: @SQ SN:contig_7742_pilon__uns LN:11908 skipping SAM header line: @SQ SN:contig_7743_pilon__uns LN:19573 skipping SAM header line: @SQ SN:contig_7754_pilon__uns LN:8433 skipping SAM header line: @SQ SN:contig_7755_pilon__uns LN:42949 skipping SAM header line: @SQ SN:contig_7756_pilon__uns LN:824 skipping SAM header line: @SQ SN:contig_7762_pilon__uns LN:44173 skipping SAM header line: @SQ SN:contig_7765_pilon__uns LN:23510 skipping SAM header line: @SQ SN:contig_7767_pilon__uns LN:24094 skipping SAM header line: @SQ SN:contig_7771_pilon__uns LN:534 skipping SAM header line: @SQ SN:contig_7773_pilon__uns LN:21793 skipping SAM header line: @SQ SN:contig_7774_pilon__uns LN:12511 skipping SAM header line: @SQ SN:contig_777_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_7780_pilon__uns LN:642 skipping SAM header line: @SQ SN:contig_7783_pilon__uns LN:9954 skipping SAM header line: @SQ SN:contig_7784_pilon__uns LN:2616 skipping SAM header line: @SQ SN:contig_7785_pilon__uns LN:170967 skipping SAM header line: @SQ SN:contig_7792_pilon__uns LN:13021 skipping SAM header line: @SQ SN:contig_7795_pilon__uns LN:2068 skipping SAM header line: @SQ SN:contig_7801_pilon__uns LN:617 skipping SAM header line: @SQ SN:contig_7805_pilon__uns LN:815 skipping SAM header line: @SQ SN:contig_7814_pilon__uns LN:47131 skipping SAM header line: @SQ SN:contig_7816_pilon__uns LN:19530 skipping SAM header line: @SQ SN:contig_7818_pilon__uns LN:2430 skipping SAM header line: @SQ SN:contig_7819_pilon__uns LN:14077 skipping SAM header line: @SQ SN:contig_781_pilon__uns LN:9344 skipping SAM header line: @SQ SN:contig_7822_pilon__uns LN:27276 skipping SAM header line: @SQ SN:contig_7828_pilon__uns LN:711 skipping SAM header line: @SQ SN:contig_7829_pilon__uns LN:291328 skipping SAM header line: @SQ SN:contig_782_pilon__uns LN:760 skipping SAM header line: @SQ SN:contig_7830_pilon__uns LN:108953 skipping SAM header line: @SQ SN:contig_7836_pilon__uns LN:795 skipping SAM header line: @SQ SN:contig_783_pilon__uns LN:234756 skipping SAM header line: @SQ SN:contig_7840_pilon__uns LN:10329 skipping SAM header line: @SQ SN:contig_7845_pilon__uns LN:5649 skipping SAM header line: @SQ SN:contig_7846_pilon__uns LN:13810 skipping SAM header line: @SQ SN:contig_7848_pilon__uns LN:476 skipping SAM header line: @SQ SN:contig_7849_pilon__uns LN:5637 skipping SAM header line: @SQ SN:contig_7863_pilon__uns LN:5935 skipping SAM header line: @SQ SN:contig_7866_pilon__uns LN:23609 skipping SAM header line: @SQ SN:contig_7867_pilon__uns LN:89727 skipping SAM header line: @SQ SN:contig_786_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_7871_pilon__uns LN:639 skipping SAM header line: @SQ SN:contig_7872_pilon__uns LN:12065 skipping SAM header line: @SQ SN:contig_7873_pilon__uns LN:1082 skipping SAM header line: @SQ SN:contig_7875_pilon__uns LN:3310 skipping SAM header line: @SQ SN:contig_7879_pilon__uns LN:2029 skipping SAM header line: @SQ SN:contig_787_pilon___frag_1__uns LN:9589 skipping SAM header line: @SQ SN:contig_787_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_3__uns LN:24001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_4___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_787_pilon___frag_5__uns LN:50139 skipping SAM header line: @SQ SN:contig_7880_pilon__uns LN:30844 skipping SAM header line: @SQ SN:contig_7881_pilon__uns LN:2153 skipping SAM header line: @SQ SN:contig_7884_pilon__uns LN:1304 skipping SAM header line: @SQ SN:contig_7886_pilon__uns LN:4435 skipping SAM header line: @SQ SN:contig_7890_pilon__uns LN:8905 skipping SAM header line: @SQ SN:contig_7892_pilon__uns LN:45436 skipping SAM header line: @SQ SN:contig_7893_pilon__uns LN:771 skipping SAM header line: @SQ SN:contig_7894_pilon__uns LN:82881 skipping SAM header line: @SQ SN:contig_7899_pilon__uns LN:532 skipping SAM header line: @SQ SN:contig_7900_pilon__uns LN:5786 skipping SAM header line: @SQ SN:contig_7906_pilon__uns LN:2768 skipping SAM header line: @SQ SN:contig_7908_pilon__uns LN:16993 skipping SAM header line: @SQ SN:contig_7917_pilon__uns LN:519 skipping SAM header line: @SQ SN:contig_791_pilon__uns LN:1953 skipping SAM header line: @SQ SN:contig_7928_pilon__uns LN:24411 skipping SAM header line: @SQ SN:contig_7931_pilon__uns LN:7750 skipping SAM header line: @SQ SN:contig_7932_pilon__uns LN:616 skipping SAM header line: @SQ SN:contig_7935_pilon__uns LN:6098 skipping SAM header line: @SQ SN:contig_7938_pilon__uns LN:626 skipping SAM header line: @SQ SN:contig_7939_pilon__uns LN:8080 skipping SAM header line: @SQ SN:contig_793_pilon__uns LN:2570 skipping SAM header line: @SQ SN:contig_7940_pilon__uns LN:782 skipping SAM header line: @SQ SN:contig_7947_pilon__uns LN:69876 skipping SAM header line: @SQ SN:contig_7949_pilon__uns LN:628 skipping SAM header line: @SQ SN:contig_7952_pilon__uns LN:9227 skipping SAM header line: @SQ SN:contig_7955_pilon__uns LN:1965 skipping SAM header line: @SQ SN:contig_7957_pilon__uns LN:3043 skipping SAM header line: @SQ SN:contig_7958_pilon__uns LN:804 skipping SAM header line: @SQ SN:contig_795_pilon__uns LN:3242 skipping SAM header line: @SQ SN:contig_7963_pilon__uns LN:2773 skipping SAM header line: @SQ SN:contig_7968_pilon__uns LN:9134 skipping SAM header line: @SQ SN:contig_7969_pilon__uns LN:11230 skipping SAM header line: @SQ SN:contig_7976_pilon__uns LN:1975 skipping SAM header line: @SQ SN:contig_7977_pilon__uns LN:600 skipping SAM header line: @SQ SN:contig_7980_pilon__uns LN:1980 skipping SAM header line: @SQ SN:contig_7981_pilon__uns LN:31818 skipping SAM header line: @SQ SN:contig_7983_pilon__uns LN:13290 skipping SAM header line: @SQ SN:contig_7984_pilon__uns LN:150825 skipping SAM header line: @SQ SN:contig_798_pilon__uns LN:227830 skipping SAM header line: @SQ SN:contig_7997_pilon__uns LN:684 skipping SAM header line: @SQ SN:contig_7999_pilon__uns LN:38532 skipping SAM header line: @SQ SN:contig_79_pilon__uns LN:43352 skipping SAM header line: @SQ SN:contig_8001_pilon__uns LN:958 skipping SAM header line: @SQ SN:contig_8002_pilon__uns LN:4582 skipping SAM header line: @SQ SN:contig_8011_pilon__uns LN:597 skipping SAM header line: @SQ SN:contig_8012_pilon__uns LN:3814 skipping SAM header line: @SQ SN:contig_8013_pilon__uns LN:1215 skipping SAM header line: @SQ SN:contig_8018_pilon__uns LN:670 skipping SAM header line: @SQ SN:contig_8020_pilon__uns LN:7663 skipping SAM header line: @SQ SN:contig_8021_pilon__uns LN:4816 skipping SAM header line: @SQ SN:contig_8024_pilon__uns LN:493 skipping SAM header line: @SQ SN:contig_8025_pilon__uns LN:53780 skipping SAM header line: @SQ SN:contig_8027_pilon__uns LN:102026 skipping SAM header line: @SQ SN:contig_8028_pilon__uns LN:4828 skipping SAM header line: @SQ SN:contig_8033_pilon__uns LN:5247 skipping SAM header line: @SQ SN:contig_8034_pilon__uns LN:2533 skipping SAM header line: @SQ SN:contig_8036_pilon__uns LN:1096 skipping SAM header line: @SQ SN:contig_803_pilon__uns LN:216696 skipping SAM header line: @SQ SN:contig_8041_pilon__uns LN:5403 skipping SAM header line: @SQ SN:contig_8055_pilon__uns LN:759 skipping SAM header line: @SQ SN:contig_8057_pilon__uns LN:1100 skipping SAM header line: @SQ SN:contig_8059_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_8065_pilon__uns LN:2436 skipping SAM header line: @SQ SN:contig_8070_pilon__uns LN:65374 skipping SAM header line: @SQ SN:contig_8071_pilon__uns LN:1411 skipping SAM header line: @SQ SN:contig_8076_pilon__uns LN:16461 skipping SAM header line: @SQ SN:contig_8089_pilon__uns LN:5108 skipping SAM header line: @SQ SN:contig_8090_pilon__uns LN:704 skipping SAM header line: @SQ SN:contig_8093_pilon__uns LN:46219 skipping SAM header line: @SQ SN:contig_8096_pilon__uns LN:12502 skipping SAM header line: @SQ SN:contig_80_pilon__uns LN:91059 skipping SAM header line: @SQ SN:contig_8100_pilon__uns LN:619 skipping SAM header line: @SQ SN:contig_8101_pilon__uns LN:40547 skipping SAM header line: @SQ SN:contig_8103_pilon__uns LN:5346 skipping SAM header line: @SQ SN:contig_8105_pilon__uns LN:136730 skipping SAM header line: @SQ SN:contig_8106_pilon__uns LN:2093 skipping SAM header line: @SQ SN:contig_8121_pilon__uns LN:482 skipping SAM header line: @SQ SN:contig_8129_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8131_pilon__uns LN:16087 skipping SAM header line: @SQ SN:contig_8140_pilon__uns LN:1102 skipping SAM header line: @SQ SN:contig_8141_pilon__uns LN:502 skipping SAM header line: @SQ SN:contig_8145_pilon__uns LN:20158 skipping SAM header line: @SQ SN:contig_8146_pilon__uns LN:625 skipping SAM header line: @SQ SN:contig_8148_pilon__uns LN:1802 skipping SAM header line: @SQ SN:contig_8150_pilon__uns LN:498 skipping SAM header line: @SQ SN:contig_8153_pilon__uns LN:3793 skipping SAM header line: @SQ SN:contig_8154_pilon__uns LN:63970 skipping SAM header line: @SQ SN:contig_8157_pilon__uns LN:1153 skipping SAM header line: @SQ SN:contig_8158_pilon__uns LN:4993 skipping SAM header line: @SQ SN:contig_8162_pilon__uns LN:9824 skipping SAM header line: @SQ SN:contig_8165_pilon__uns LN:2346 skipping SAM header line: @SQ SN:contig_816_pilon__uns LN:242892 skipping SAM header line: @SQ SN:contig_8170_pilon__uns LN:1637 skipping SAM header line: @SQ SN:contig_8171_pilon__uns LN:1088 skipping SAM header line: @SQ SN:contig_8172_pilon__uns LN:1241 skipping SAM header line: @SQ SN:contig_8180_pilon__uns LN:900 skipping SAM header line: @SQ SN:contig_8182_pilon__uns LN:1313 skipping SAM header line: @SQ SN:contig_8183_pilon__uns LN:11387 skipping SAM header line: @SQ SN:contig_8186_pilon__uns LN:483 skipping SAM header line: @SQ SN:contig_8189_pilon__uns LN:6075 skipping SAM header line: @SQ SN:contig_8192_pilon__uns LN:1098 skipping SAM header line: @SQ SN:contig_8195_pilon__uns LN:3599 skipping SAM header line: @SQ SN:contig_8198_pilon__uns LN:504 skipping SAM header line: @SQ SN:contig_8202_pilon__uns LN:7205 skipping SAM header line: @SQ SN:contig_8204_pilon__uns LN:1179 skipping SAM header line: @SQ SN:contig_8206_pilon__uns LN:6598 skipping SAM header line: @SQ SN:contig_8207_pilon__uns LN:1150 skipping SAM header line: @SQ SN:contig_8212_pilon__uns LN:9194 skipping SAM header line: @SQ SN:contig_8213_pilon__uns LN:3380 skipping SAM header line: @SQ SN:contig_8217_pilon__uns LN:876 skipping SAM header line: @SQ SN:contig_8219_pilon__uns LN:4178 skipping SAM header line: @SQ SN:contig_8222_pilon__uns LN:424 skipping SAM header line: @SQ SN:contig_8223_pilon__uns LN:968 skipping SAM header line: @SQ SN:contig_8224_pilon__uns LN:55660 skipping SAM header line: @SQ SN:contig_8225_pilon__uns LN:10375 skipping SAM header line: @SQ SN:contig_8227_pilon__uns LN:1045 skipping SAM header line: @SQ SN:contig_8228_pilon__uns LN:5801 skipping SAM header line: @SQ SN:contig_8231_pilon__uns LN:655 skipping SAM header line: @SQ SN:contig_8232_pilon__uns LN:72277 skipping SAM header line: @SQ SN:contig_8233_pilon__uns LN:9436 skipping SAM header line: @SQ SN:contig_8242_pilon__uns LN:17300 skipping SAM header line: @SQ SN:contig_8251_pilon__uns LN:1551 skipping SAM header line: @SQ SN:contig_8252_pilon__uns LN:6619 skipping SAM header line: @SQ SN:contig_8253_pilon__uns LN:1800 skipping SAM header line: @SQ SN:contig_8254_pilon___frag_2___debris__uns LN:1001 skipping SAM header line: @SQ SN:contig_8257_pilon__uns LN:1083 skipping SAM header line: @SQ SN:contig_8259_pilon__uns LN:14377 skipping SAM header line: @SQ SN:contig_8260_pilon__uns LN:1134 skipping SAM header line: @SQ SN:contig_8261_pilon__uns LN:1621 skipping SAM header line: @SQ SN:contig_8262_pilon__uns LN:58374 skipping SAM header line: @SQ SN:contig_8268_pilon__uns LN:723 skipping SAM header line: @SQ SN:contig_8269_pilon__uns LN:1763 skipping SAM header line: @SQ SN:contig_8272_pilon__uns LN:925 skipping SAM header line: @SQ SN:contig_8277_pilon__uns LN:564 skipping SAM header line: @SQ SN:contig_8278_pilon__uns LN:546 skipping SAM header line: @SQ SN:contig_8280_pilon__uns LN:695 skipping SAM header line: @SQ SN:contig_8286_pilon__uns LN:1141 skipping SAM header line: @SQ SN:contig_8289_pilon__uns LN:988 skipping SAM header line: @SQ SN:contig_8296_pilon__uns LN:81906 skipping SAM header line: @SQ SN:contig_8298_pilon__uns LN:1131 skipping SAM header line: @SQ SN:contig_8299_pilon__uns LN:812 skipping SAM header line: @SQ SN:contig_8302_pilon__uns LN:862 skipping SAM header line: @SQ SN:contig_8303_pilon__uns LN:1005 skipping SAM header line: @SQ SN:contig_8305_pilon__uns LN:1068 skipping SAM header line: @SQ SN:contig_8306_pilon__uns LN:7296 skipping SAM header line: @SQ SN:contig_830_pilon___frag_1__uns LN:77371 skipping SAM header line: @SQ SN:contig_830_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_830_pilon___frag_3__uns LN:70138 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_1__uns LN:59872 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_8310_pilon___frag_3__uns LN:44643 skipping SAM header line: @SQ SN:contig_8316_pilon__uns LN:1156 skipping SAM header line: @SQ SN:contig_8317_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_8318_pilon__uns LN:65318 skipping SAM header line: @SQ SN:contig_8321_pilon__uns LN:5080 skipping SAM header line: @SQ SN:contig_8323_pilon__uns LN:527 skipping SAM header line: @SQ SN:contig_8324_pilon__uns LN:12317 skipping SAM header line: @SQ SN:contig_8327_pilon__uns LN:6911 skipping SAM header line: @SQ SN:contig_8328_pilon__uns LN:3016 skipping SAM header line: @SQ SN:contig_8347_pilon__uns LN:741 skipping SAM header line: @SQ SN:contig_834_pilon__uns LN:1063 skipping SAM header line: @SQ SN:contig_8362_pilon__uns LN:96485 skipping SAM header line: @SQ SN:contig_8363_pilon__uns LN:2548 skipping SAM header line: @SQ SN:contig_8375_pilon__uns LN:1006 skipping SAM header line: @SQ SN:contig_8381_pilon__uns LN:12593 skipping SAM header line: @SQ SN:contig_8383_pilon__uns LN:3398 skipping SAM header line: @SQ SN:contig_8388_pilon__uns LN:13651 skipping SAM header line: @SQ SN:contig_8398_pilon__uns LN:11271 skipping SAM header line: @SQ SN:contig_8400_pilon__uns LN:4188 skipping SAM header line: @SQ SN:contig_8405_pilon__uns LN:79715 skipping SAM header line: @SQ SN:contig_8414_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8417_pilon__uns LN:530 skipping SAM header line: @SQ SN:contig_8422_pilon__uns LN:27518 skipping SAM header line: @SQ SN:contig_8434_pilon__uns LN:78063 skipping SAM header line: @SQ SN:contig_8439_pilon__uns LN:3573 skipping SAM header line: @SQ SN:contig_843_pilon__uns LN:50289 skipping SAM header line: @SQ SN:contig_8450_pilon__uns LN:3727 skipping SAM header line: @SQ SN:contig_8456_pilon__uns LN:2396 skipping SAM header line: @SQ SN:contig_8462_pilon__uns LN:5034 skipping SAM header line: @SQ SN:contig_846_pilon__uns LN:80700 skipping SAM header line: @SQ SN:contig_8470_pilon__uns LN:572 skipping SAM header line: @SQ SN:contig_8471_pilon__uns LN:3020 skipping SAM header line: @SQ SN:contig_847_pilon__uns LN:71338 skipping SAM header line: @SQ SN:contig_8489_pilon__uns LN:13234 skipping SAM header line: @SQ SN:contig_848_pilon__uns LN:70240 skipping SAM header line: @SQ SN:contig_8491_pilon__uns LN:3201 skipping SAM header line: @SQ SN:contig_8492_pilon__uns LN:2630 skipping SAM header line: @SQ SN:contig_8503_pilon__uns LN:42080 skipping SAM header line: @SQ SN:contig_8509_pilon__uns LN:16330 skipping SAM header line: @SQ SN:contig_850_pilon__uns LN:32668 skipping SAM header line: @SQ SN:contig_8511_pilon__uns LN:2081 skipping SAM header line: @SQ SN:contig_8514_pilon__uns LN:1440 skipping SAM header line: @SQ SN:contig_851_pilon__uns LN:36618 skipping SAM header line: @SQ SN:contig_8527_pilon__uns LN:2770 skipping SAM header line: @SQ SN:contig_852_pilon___frag_1__uns LN:82888 skipping SAM header line: @SQ SN:contig_852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:contig_852_pilon___frag_3__uns LN:46458 skipping SAM header line: @SQ SN:contig_8530_pilon__uns LN:2196 skipping SAM header line: @SQ SN:contig_8536_pilon__uns LN:2567 skipping SAM header line: @SQ SN:contig_8543_pilon__uns LN:2659 skipping SAM header line: @SQ SN:contig_8544_pilon__uns LN:24320 skipping SAM header line: @SQ SN:contig_8546_pilon__uns LN:20430 skipping SAM header line: @SQ SN:contig_8548_pilon__uns LN:341 skipping SAM header line: @SQ SN:contig_8549_pilon__uns LN:23276 skipping SAM header line: @SQ SN:contig_8550_pilon__uns LN:48458 skipping SAM header line: @SQ SN:contig_855_pilon__uns LN:17464 skipping SAM header line: @SQ SN:contig_8560_pilon__uns LN:96554 skipping SAM header line: @SQ SN:contig_8570_pilon__uns LN:13680 skipping SAM header line: @SQ SN:contig_8577_pilon__uns LN:1350 skipping SAM header line: @SQ SN:contig_8595_pilon__uns LN:10144 skipping SAM header line: @SQ SN:contig_8598_pilon__uns LN:2135 skipping SAM header line: @SQ SN:contig_85_pilon__uns LN:55958 skipping SAM header line: @SQ SN:contig_8601_pilon__uns LN:2625 skipping SAM header line: @SQ SN:contig_8606_pilon__uns LN:937 skipping SAM header line: @SQ SN:contig_8609_pilon__uns LN:2912 skipping SAM header line: @SQ SN:contig_860_pilon__uns LN:5975 skipping SAM header line: @SQ SN:contig_8610_pilon__uns LN:3101 skipping SAM header line: @SQ SN:contig_8615_pilon__uns LN:467 skipping SAM header line: @SQ SN:contig_8616_pilon__uns LN:1722 skipping SAM header line: @SQ SN:contig_8617_pilon__uns LN:73123 skipping SAM header line: @SQ SN:contig_8618_pilon__uns LN:2087 skipping SAM header line: @SQ SN:contig_861_pilon__uns LN:7439 skipping SAM header line: @SQ SN:contig_8620_pilon__uns LN:1020 skipping SAM header line: @SQ SN:contig_8621_pilon__uns LN:63859 skipping SAM header line: @SQ SN:contig_8624_pilon__uns LN:8217 skipping SAM header line: @SQ SN:contig_8626_pilon__uns LN:9308 skipping SAM header line: @SQ SN:contig_8628_pilon__uns LN:4281 skipping SAM header line: @SQ SN:contig_8629_pilon__uns LN:9078 skipping SAM header line: @SQ SN:contig_8633_pilon__uns LN:4480 skipping SAM header line: @SQ SN:contig_8634_pilon__uns LN:3444 skipping SAM header line: @SQ SN:contig_8642_pilon__uns LN:758 skipping SAM header line: @SQ SN:contig_8647_pilon__uns LN:1648 skipping SAM header line: @SQ SN:contig_8656_pilon__uns LN:4419 skipping SAM header line: @SQ SN:contig_8658_pilon__uns LN:2056 skipping SAM header line: @SQ SN:contig_865_pilon__uns LN:3675 skipping SAM header line: @SQ SN:contig_8661_pilon__uns LN:2426 skipping SAM header line: @SQ SN:contig_8665_pilon__uns LN:120408 skipping SAM header line: @SQ SN:contig_8669_pilon__uns LN:856 skipping SAM header line: @SQ SN:contig_8670_pilon__uns LN:3216 skipping SAM header line: @SQ SN:contig_8671_pilon__uns LN:901 skipping SAM header line: @SQ SN:contig_8673_pilon__uns LN:3725 skipping SAM header line: @SQ SN:contig_8675_pilon__uns LN:238 skipping SAM header line: @SQ SN:contig_8678_pilon__uns LN:949 skipping SAM header line: @SQ SN:contig_867_pilon__uns LN:3159 skipping SAM header line: @SQ SN:contig_8688_pilon__uns LN:2641 skipping SAM header line: @SQ SN:contig_8689_pilon__uns LN:12883 skipping SAM header line: @SQ SN:contig_868_pilon__uns LN:4456 skipping SAM header line: @SQ SN:contig_8697_pilon__uns LN:1318 skipping SAM header line: @SQ SN:contig_86_pilon__uns LN:182895 skipping SAM header line: @SQ SN:contig_8703_pilon__uns LN:2835 skipping SAM header line: @SQ SN:contig_8712_pilon__uns LN:2435 skipping SAM header line: @SQ SN:contig_8718_pilon__uns LN:4259 skipping SAM header line: @SQ SN:contig_8733_pilon__uns LN:24751 skipping SAM header line: @SQ SN:contig_8737_pilon__uns LN:1871 skipping SAM header line: @SQ SN:contig_873_pilon__uns LN:33210 skipping SAM header line: @SQ SN:contig_8746_pilon__uns LN:29296 skipping SAM header line: @SQ SN:contig_8751_pilon__uns LN:3031 skipping SAM header line: @SQ SN:contig_8754_pilon__uns LN:5949 skipping SAM header line: @SQ SN:contig_8761_pilon__uns LN:2585 skipping SAM header line: @SQ SN:contig_8765_pilon__uns LN:12506 skipping SAM header line: @SQ SN:contig_8769_pilon__uns LN:924 skipping SAM header line: @SQ SN:contig_8774_pilon__uns LN:892 skipping SAM header line: @SQ SN:contig_878_pilon__uns LN:4009 skipping SAM header line: @SQ SN:contig_883_pilon__uns LN:15642 skipping SAM header line: @SQ SN:contig_888_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_891_pilon__uns LN:94943 skipping SAM header line: @SQ SN:contig_898_pilon___frag_1__uns LN:26501 skipping SAM header line: @SQ SN:contig_898_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_899_pilon__uns LN:46917 skipping SAM header line: @SQ SN:contig_902_pilon__uns LN:740 skipping SAM header line: @SQ SN:contig_909_pilon__uns LN:1612 skipping SAM header line: @SQ SN:contig_913_pilon__uns LN:2294 skipping SAM header line: @SQ SN:contig_917_pilon__uns LN:9339 skipping SAM header line: @SQ SN:contig_91_pilon__uns LN:36317 skipping SAM header line: @SQ SN:contig_928_pilon__uns LN:1431 skipping SAM header line: @SQ SN:contig_932_pilon__uns LN:55711 skipping SAM header line: @SQ SN:contig_933_pilon__uns LN:10616 skipping SAM header line: @SQ SN:contig_941_pilon__uns LN:27219 skipping SAM header line: @SQ SN:contig_949_pilon__uns LN:15576 skipping SAM header line: @SQ SN:contig_951_pilon__uns LN:70592 skipping SAM header line: @SQ SN:contig_953_pilon__uns LN:78497 skipping SAM header line: @SQ SN:contig_957_pilon___frag_2___debris__uns LN:3001 skipping SAM header line: @SQ SN:contig_958_pilon__uns LN:50155 skipping SAM header line: @SQ SN:contig_959_pilon__uns LN:15123 skipping SAM header line: @SQ SN:contig_961_pilon___frag_1__uns LN:61407 skipping SAM header line: @SQ SN:contig_961_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_3__uns LN:136001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_4___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_961_pilon___frag_5__uns LN:49432 skipping SAM header line: @SQ SN:contig_967_pilon__uns LN:33718 skipping SAM header line: @SQ SN:contig_969_pilon__uns LN:5031 skipping SAM header line: @SQ SN:contig_970_pilon__uns LN:2987 skipping SAM header line: @SQ SN:contig_973_pilon__uns LN:738 skipping SAM header line: @SQ SN:contig_975_pilon__uns LN:1394 skipping SAM header line: @SQ SN:contig_980_pilon___frag_2___debris__uns LN:5001 skipping SAM header line: @SQ SN:contig_988_pilon__uns LN:1201 skipping SAM header line: @SQ SN:contig_989_pilon__uns LN:2782 skipping SAM header line: @SQ SN:contig_991_pilon__uns LN:38039 skipping SAM header line: @SQ SN:contig_992_pilon__uns LN:30809 skipping SAM header line: @SQ SN:scaffold_11_pilon__uns LN:261324 skipping SAM header line: @SQ SN:scaffold_4415_pilon__uns LN:144318 skipping SAM header line: @SQ SN:scaffold_546_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_1__uns LN:36977 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_2___debris__uns LN:2001 skipping SAM header line: @SQ SN:scaffold_5852_pilon___frag_3__uns LN:64971 skipping SAM header line: @SQ SN:scaffold_6472_pilon__uns LN:101702 skipping SAM header line: @SQ SN:scaffold_7122_pilon__uns LN:288074 skipping SAM header line: @SQ SN:scaffold_75_pilon__uns LN:171814 skipping SAM header line: @PG ID:Bismark VN:v0.21.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz" Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: 'CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27 CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28 Processed 9261 lines in total Total number of methylation call strings processed: 18522 Final Cytosine Methylation Report ================================= Total number of C's analysed: 139697 Total methylated C's in CpG context: 12950 Total methylated C's in CHG context: 853 Total methylated C's in CHH context: 19246 Total C to T conversions in CpG context: 6215 Total C to T conversions in CHG context: 25122 Total C to T conversions in CHH context: 75311 C methylated in CpG context: 67.6% C methylated in non-CpG context: 16.7% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 81 Maximum read length of Read 2: 81 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Non_CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 75% Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: /gscratch/scrubbed/sr320/031223-dumoar/CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Writing bedGraph to file: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ... Sorting input file CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%) Finished BedGraph conversion ... Found 20 alignment reports in current directory. Now trying to figure out whether there are corresponding optional reports Writing Bismark HTML report to >> CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== Writing Bismark HTML report to >> CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.html << ============================================================================================================== Using the following alignment report: > CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.txt < Processing alignment report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.txt ... Complete Using the following deduplication report: > CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt < Processing deduplication report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ... Complete Using the following splitting report: > CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt < Processing splitting report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ... Complete Using the following M-bias report: > CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt < Processing M-bias report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ... Complete No nucleotide coverage report file specified, skipping this step ============================================================================================================== No Bismark/Bowtie2 single-end BAM files detected Found Bismark/Bowtie2 paired-end files No Bismark/HISAT2 single-end BAM files detected No Bismark/HISAT2 paired-end BAM files detected Generating Bismark summary report from 20 Bismark BAM file(s)... >> Reading from Bismark report: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.txt >> Reading from Bismark report: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.txt Wrote Bismark project summary to >> bismark_summary_report.html << [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... [bam_sort_core] merging from 0 files and 28 in-memory blocks... Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH01_06_S1_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 430 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 524 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 1111 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 510 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 695 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 449 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 483 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 672 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 557 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 529 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 1021 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 360 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 644 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 365 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 368 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 652 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 612 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 552 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 671 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 529 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 455 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 505 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 253 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 617 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 366 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 473 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 394 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 1074 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 673 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 359 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 850 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 829 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 411 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 361 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 586 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 500 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 387 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 432 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 220 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 371 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 492 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 730 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 606 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 228 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 488 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 583 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 495 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_61_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_64_pilon___frag_2___debris__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_117_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_5__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_355_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_356_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 42 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_11__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_476_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_535_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_543_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_655_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_686_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_718_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_762_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_848_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_5__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1386_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_1540_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1628_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1819_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1834_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1846_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_1921_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1924_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2143_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2254_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2322_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_2456_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2519_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2612_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2627_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2629_pilon___frag_2___debris__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2922_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2927_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_2965_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3724_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3834_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3873_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 45 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 68 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 49 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4291_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4427_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4451_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 148 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4530_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4663_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 44 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5149_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_5276_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5408_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5565_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5596_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5833_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5846_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_6175_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6314_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6365_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6430_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6452_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_6719_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6826_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 51 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7132_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7221_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_7276_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_7906_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8105_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8186_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 44 different covered positions) Writing cytosine report for chromosome contig_8261_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 63 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_8634_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8751_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 37 different covered positions) Writing cytosine report for last chromosome scaffold_75_pilon__uns (stored 11 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 289 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_157_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_219_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2392_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2512_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_440_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5854_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5892_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_798_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_816_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH01_06_S1_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH01_06_S1_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH01_14_S2_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 289 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 360 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 814 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 356 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 504 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 324 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 289 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 371 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 305 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 457 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 774 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 195 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 462 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 380 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 287 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 492 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 469 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 374 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 422 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 432 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 245 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 283 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 204 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 346 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 331 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 276 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 267 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 648 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 355 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 222 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 539 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 464 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 236 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 272 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 428 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 355 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 336 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 310 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 287 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 326 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 378 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 560 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 422 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 245 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 363 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 500 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 373 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_64_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_142_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_145_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_233_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_256_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_266_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_353_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_367_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_396_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 44 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_9___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_11__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_489_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_585_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_758_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_843_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_953_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_5__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1031_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1094_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1117_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1121_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1258_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1330_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_1372_pilon___frag_2___debris__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_1497_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_1540_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1638_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1670_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1697_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1795_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1810_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1819_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1896_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_5__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2255_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_2443_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2507_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2563_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2629_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3068_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3186_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3611_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3758_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3853_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3856_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_4069_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4165_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 56 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 40 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4406_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4451_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 100 different covered positions) Writing cytosine report for chromosome contig_4464_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4506_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4517_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4539_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4623_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4663_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4771_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 43 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 59 different covered positions) Writing cytosine report for chromosome contig_5388_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5414_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5565_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5736_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5758_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5829_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_6064_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_6096_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6110_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6136_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6413_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6562_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 67 different covered positions) Writing cytosine report for chromosome contig_6715_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 52 different covered positions) Writing cytosine report for chromosome contig_7013_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7110_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7133_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7248_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7294_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7565_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7677_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8224_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 38 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8514_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8617_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8642_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8665_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 4 different covered positions) Writing cytosine report for last chromosome scaffold_4415_pilon__uns (stored 5 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 300 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1835_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_219_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2392_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_482_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5190_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_726_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7703_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_891_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH01_14_S2_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH01_14_S2_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH01_22_S3_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 316 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 451 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 934 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 492 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 602 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 372 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 391 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 565 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 454 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 395 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 1024 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 262 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 678 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 305 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 365 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 498 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 549 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 378 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 510 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 466 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 345 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 316 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 233 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 582 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 488 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 446 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 331 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 1283 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 575 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 335 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 730 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 774 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 290 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 355 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 451 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 543 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 345 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 374 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 239 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 308 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 378 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 613 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 583 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 338 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 386 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 610 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 454 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_61_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_64_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_142_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_189_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_336_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 76 different covered positions) Writing cytosine report for chromosome contig_423_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_429_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_9___frag_3__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_446_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_476_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_590_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_642_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_675_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_701_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_843_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_855_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1036_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1206_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1229_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1339_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1399_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1488_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1497_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_1556_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1599_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1881_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1963_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2143_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2376_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2444_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2446_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2519_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_2725_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2763_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2927_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 60 different covered positions) Writing cytosine report for chromosome contig_2965_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_3144_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3150_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3343_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3456_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3643_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3659_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3806_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3811_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3889_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_4069_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4111_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 47 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 32 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 83 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 120 different covered positions) Writing cytosine report for chromosome contig_4472_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4517_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_4583_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4623_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4663_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4757_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 40 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 46 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5596_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5844_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5846_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5897_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 42 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_6121_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6136_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6175_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6314_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6541_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_6652_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 38 different covered positions) Writing cytosine report for chromosome contig_6719_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6860_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 55 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7110_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7373_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7446_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7560_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7565_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7822_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7892_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7981_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8041_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8189_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 60 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_8503_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8560_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8617_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8689_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 7 different covered positions) Writing cytosine report for last chromosome scaffold_4415_pilon__uns (stored 16 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 301 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_172_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1835_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_219_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2669_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_303_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4212_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_482_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6363_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7272_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7378_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7894_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_798_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH01_22_S3_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH01_22_S3_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH01_38_S4_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 230 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 398 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 879 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 458 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 457 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 444 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 325 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 321 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 353 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 406 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 826 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 243 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 445 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 326 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 263 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 564 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 404 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 415 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 375 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 410 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 325 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 309 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 171 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 360 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 353 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 272 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 240 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 701 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 331 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 308 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 512 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 450 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 216 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 263 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 376 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 459 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 268 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 331 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 211 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 332 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 358 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 611 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 456 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 250 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 349 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 527 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 396 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_142_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_145_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_190_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_211_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_310_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_382_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_499_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_620_pilon___frag_2___debris__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_642_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_643_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_873_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_917_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_970_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1042_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1315_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1329_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1399_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1444_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1461_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1671_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1729_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1819_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1902_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1963_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2255_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2299_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2443_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2507_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2519_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2949_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3073_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3133_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3266_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3659_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3785_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3829_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3834_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_4105_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4169_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4217_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4224_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4257_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4406_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4427_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 72 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4663_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4733_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4812_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5014_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5015_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5090_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_5211_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 31 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 43 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5609_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_5656_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_5736_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5833_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5845_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6040_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6095_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6529_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6541_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_6637_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6764_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 50 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7565_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7586_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7621_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7742_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8222_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_8560_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 1 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 1 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 287 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1439_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_303_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_372_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3781_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3793_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4274_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4938_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5190_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5892_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5916_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_726_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_951_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH01_38_S4_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH01_38_S4_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH03_04_S5_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 67 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 358 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 579 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 371 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 292 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 205 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 348 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 64 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 83 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 172 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 586 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 137 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 74 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 191 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 212 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 402 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 221 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 217 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 99 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 227 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 150 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 76 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 171 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 131 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 36 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 33 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 166 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 85 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 62 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 23 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 121 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 90 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 13 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 98 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 150 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 304 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 130 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 327 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 172 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 247 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 464 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 372 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 356 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 162 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 201 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 419 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 191 different covered positions) Writing cytosine report for chromosome contig_1_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_31_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_32_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_122_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_145_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_176_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_211_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_236_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_252_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_268_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_336_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_5__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_7__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_477_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_642_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_675_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_715_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_795_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_899_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_941_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_953_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_988_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1089_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1117_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1184_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1206_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1225_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1244_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1386_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1444_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1497_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1646_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1670_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1780_pilon___frag_3__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1830_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1896_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1921_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1923_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_5__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1991_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2060_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2087_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2183_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2253_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2255_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2296_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2313_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2446_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2509_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2519_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2520_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2544_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2610_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2627_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2639_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2725_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_2730_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2859_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2927_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2928_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2929_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_2962_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3040_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3132_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3200_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3204_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3220_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3489_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3600_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3611_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3724_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3732_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3734_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3777_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3814_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3832_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3837_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_3889_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4105_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4169_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4257_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4345_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4353_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4378_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4412_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4451_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4472_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4517_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4667_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4733_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4763_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4877_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4942_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4944_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5066_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5090_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5178_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5235_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5250_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5276_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5408_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5414_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5630_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5647_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5656_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5657_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5717_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5796_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5829_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5833_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5846_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5896_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_6042_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6063_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6096_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6347_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6404_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6529_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6615_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6619_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6698_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6799_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6918_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6987_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7076_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7111_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7133_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7298_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7347_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7410_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7439_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7467_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7560_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7677_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7762_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7785_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8020_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_8105_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8146_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8180_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8262_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8388_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8560_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8617_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_8621_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_8628_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8746_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 2 different covered positions) Writing cytosine report for last chromosome scaffold_6472_pilon__uns (stored 1 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 337 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1125_pilon__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1439_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_1460_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1622_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1797_pilon__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2286_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_282_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_315_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_372_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4268_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4335_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4413_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_4441_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4519_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4570_pilon__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5127_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5190_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_5226_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5246_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5637_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5854_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5873_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5916_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5937_pilon__uns Writing cytosine report for not covered chromosome contig_5940_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6363_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_6551_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6932_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_726_pilon__uns Writing cytosine report for not covered chromosome contig_7272_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_732_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7464_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7607_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7616_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7708_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7755_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7894_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_803_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8232_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8434_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_11_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH03_04_S5_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH03_04_S5_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH03_15_S6_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 109 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 306 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 668 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 456 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 330 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 270 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 334 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 172 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 127 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 161 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 631 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 137 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 157 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 234 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 217 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 477 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 275 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 232 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 170 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 283 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 190 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 146 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 202 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 182 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 85 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 93 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 176 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 192 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 103 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 66 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 124 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 142 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 43 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 137 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 123 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 455 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 135 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 284 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 194 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 297 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 422 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 406 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 419 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 288 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 167 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 440 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 256 different covered positions) Writing cytosine report for chromosome contig_31_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_64_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_122_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_127_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_128_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_189_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_211_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_233_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_235_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_236_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_268_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_355_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_367_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_385_pilon___frag_2___debris__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_423_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_476_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_523_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_539_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_543_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_547_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_585_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_590_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_762_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_852_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_953_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_958_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1015_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1159_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1207_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1225_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1254_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1291_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1307_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1315_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1372_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1395_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1399_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1445_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1488_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1540_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1556_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1646_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1663_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1672_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1706_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1780_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1819_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1830_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1864_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1869_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1904_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1989_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2255_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2299_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2376_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2443_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2456_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2473_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2515_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2519_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2544_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2587_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2600_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2612_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2617_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2629_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2639_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2725_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3203_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3301_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_3343_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3628_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3740_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3753_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3758_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3765_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3780_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3784_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_3814_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3837_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_3981_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4225_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4229_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4257_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4328_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4353_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4517_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4623_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4757_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4763_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5003_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5065_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5066_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5236_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5295_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5414_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5499_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5565_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5571_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5596_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5656_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5736_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5796_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5799_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5824_pilon___frag_1__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5828_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5829_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5883_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5900_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5918_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6047_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6096_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6151_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6259_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6273_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6298_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6365_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6404_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6469_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6541_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6615_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6619_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6647_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6652_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6709_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6764_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6780_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6866_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6906_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_7006_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7085_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7133_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7184_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7230_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_7276_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7433_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7446_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7484_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7509_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7785_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7814_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7829_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7872_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7957_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_7984_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7999_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8025_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8105_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_8106_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8158_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8189_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8204_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8296_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8550_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8621_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome scaffold_4415_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome scaffold_5852_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 9 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 359 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1125_pilon__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1622_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1655_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1797_pilon__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2392_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3224_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_327_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3320_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3368_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_372_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3996_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4212_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_4246_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4335_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4389_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_440_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_4441_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4570_pilon__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4950_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4955_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_50_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5127_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5246_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5637_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5854_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5873_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5892_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6363_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_6551_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6667_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7272_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7378_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7616_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7703_pilon__uns Writing cytosine report for not covered chromosome contig_7708_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7755_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_798_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_816_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH03_15_S6_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH03_15_S6_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH03_33_S7_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 337 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 490 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 1152 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 669 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 741 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 502 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 402 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 544 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 390 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 527 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 1038 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 334 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 797 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 462 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 373 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 681 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 689 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 581 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 661 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 444 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 446 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 370 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 244 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 633 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 526 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 504 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 367 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 1036 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 493 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 513 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 854 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 746 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 405 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 504 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 597 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 493 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 279 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 431 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 319 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 317 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 512 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 797 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 650 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 228 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 494 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 778 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 502 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_142_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_210_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_252_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_268_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_269_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_5__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_338_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_377_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 41 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_539_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_543_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_590_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_642_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_661_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 52 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_873_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1301_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1315_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_1670_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1716_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2100_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2563_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2735_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2763_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 48 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_3144_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3396_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3628_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3644_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3832_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 72 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_4100_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 39 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 49 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 196 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4771_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4834_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_4936_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4970_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5066_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_5090_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 32 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_5244_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5388_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5408_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5589_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_5715_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5846_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5932_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 60 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 39 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6269_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6298_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6313_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6452_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6469_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6647_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 50 different covered positions) Writing cytosine report for chromosome contig_6697_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6719_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6802_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 96 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7230_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7237_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_7276_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7339_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_7467_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7579_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 67 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7773_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7875_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7932_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8158_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_8296_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 84 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome scaffold_4415_pilon__uns (stored 11 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 8 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 286 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_219_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3781_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3793_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_389_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4212_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4274_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_4441_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4938_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5892_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5916_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_726_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7321_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7703_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7969_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH03_33_S7_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH03_33_S7_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH05_01_S8_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 195 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 347 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 713 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 400 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 435 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 314 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 247 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 152 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 195 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 311 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 640 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 187 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 246 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 214 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 214 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 432 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 347 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 317 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 210 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 302 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 265 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 188 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 165 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 183 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 135 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 234 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 159 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 306 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 140 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 103 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 226 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 277 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 120 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 205 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 232 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 366 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 188 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 334 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 166 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 226 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 357 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 415 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 397 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 264 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 263 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 404 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 293 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_122_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_180_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_190_pilon___frag_1__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_211_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_547_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_626_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_762_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_850_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_852_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_953_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1094_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1117_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1184_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1206_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1213_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1229_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1258_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1315_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1338_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1372_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1387_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1444_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1497_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_1540_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1631_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1672_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1706_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1716_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1810_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1830_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1883_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1923_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1924_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2060_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2087_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2255_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2322_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2527_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2563_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2610_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2627_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2865_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2881_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2949_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3203_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3211_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3405_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3456_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3832_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4105_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4111_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4226_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4291_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4378_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4412_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4416_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4517_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4588_pilon___frag_2___debris__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4663_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4765_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4936_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4942_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5596_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5688_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5758_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5851_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_6040_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6064_pilon__uns (stored 100 different covered positions) Writing cytosine report for chromosome contig_6175_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6210_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6347_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6404_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6562_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6661_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6719_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6764_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6913_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_6918_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7201_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7276_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7373_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7500_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7572_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7586_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7649_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7672_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7816_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7947_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7983_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8041_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8093_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8101_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_8154_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8422_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8470_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8621_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 9 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 5 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 302 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1460_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1560_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1797_pilon__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1835_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2669_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_282_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3224_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3320_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3368_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_372_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_389_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4067_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4274_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_440_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4570_pilon__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4938_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4955_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5854_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_732_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7607_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8405_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_951_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH05_01_S8_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH05_01_S8_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH05_06_S9_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 47 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 430 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 675 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 412 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 504 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 303 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 383 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 104 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 82 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 200 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 581 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 148 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 119 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 260 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 270 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 513 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 268 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 206 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 112 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 295 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 149 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 164 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 132 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 152 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 73 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 80 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 143 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 93 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 68 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 42 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 147 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 46 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 13 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 130 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 92 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 404 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 217 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 391 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 210 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 216 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 578 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 432 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 485 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 251 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 169 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 409 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 239 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_189_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_210_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_233_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_235_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_236_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_252_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_268_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_353_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_355_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_363_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_395_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_396_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_415_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_422_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_11__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_543_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_585_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_661_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_715_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_850_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_855_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_953_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1094_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1121_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1184_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1229_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1258_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1315_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1372_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1444_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1599_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1646_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1668_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1671_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1819_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1858_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1896_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1902_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1921_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1923_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1923_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_5__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1969_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2060_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2167_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2201_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2248_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2299_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 47 different covered positions) Writing cytosine report for chromosome contig_2443_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2456_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2471_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2519_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2527_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2544_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2735_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2767_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_2791_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2816_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2875_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2926_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2928_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2967_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_3073_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3132_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3211_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3257_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3351_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3424_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3496_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3580_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3624_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3711_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3724_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3734_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3837_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4105_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4126_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4157_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4291_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4356_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4378_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4412_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4451_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4466_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4506_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4586_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4602_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4623_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4727_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4771_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4803_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4820_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5257_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5276_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5408_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5446_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5479_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5526_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5532_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5656_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5719_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5736_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5799_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5828_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5833_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5883_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_5947_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6040_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6175_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6314_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6336_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6404_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6529_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6541_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6562_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6615_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6661_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6672_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6764_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6826_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6918_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6987_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7067_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7074_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7132_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7144_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7230_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_7235_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7316_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7344_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7374_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7410_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7477_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7509_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7619_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7683_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7829_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7872_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_8025_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8093_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8105_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8153_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8261_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8262_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8323_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8388_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8617_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8647_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8665_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_8751_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome scaffold_4415_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome scaffold_5852_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome scaffold_6472_pilon__uns (stored 1 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 2 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 350 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1525_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1533_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1655_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2286_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2669_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_303_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_315_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_327_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_414_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4267_pilon__uns Writing cytosine report for not covered chromosome contig_4268_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4335_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4389_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4413_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_4441_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4950_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4955_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4966_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5002_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_50_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5637_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5873_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5916_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6822_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7272_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7321_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7378_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7607_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7616_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7703_pilon__uns Writing cytosine report for not covered chromosome contig_7708_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7734_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7894_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8232_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8405_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH05_06_S9_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH05_06_S9_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH05_21_S10_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 265 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 452 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 906 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 340 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 608 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 400 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 432 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 376 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 314 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 416 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 857 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 240 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 414 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 368 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 315 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 446 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 492 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 397 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 418 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 470 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 340 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 271 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 243 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 363 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 241 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 347 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 206 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 650 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 295 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 233 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 494 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 484 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 216 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 262 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 429 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 509 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 300 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 368 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 232 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 295 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 444 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 615 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 452 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 305 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 393 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 578 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 374 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_122_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_142_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_6___debris__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_353_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_442_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_543_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_661_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_731_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 44 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_850_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_852_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_898_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_975_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1200_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1217_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1342_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1372_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1672_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1810_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1834_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1881_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1888_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1998_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2100_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2313_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2600_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2629_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_2830_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2935_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3040_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_3252_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3326_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3424_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3723_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 43 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4217_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4225_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4257_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 32 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4427_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4451_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 64 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4693_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4877_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_5015_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5090_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5211_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5295_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 48 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5565_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5594_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5844_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 41 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6334_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6347_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6430_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6444_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6764_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_7006_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7027_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7070_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7085_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_7374_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_7397_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7507_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7509_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7563_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7582_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_7762_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7814_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8065_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8154_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8323_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_8514_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8769_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 6 different covered positions) Writing cytosine report for last chromosome scaffold_75_pilon__uns (stored 7 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 283 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2512_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2669_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4413_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_482_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5854_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5892_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH05_21_S10_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH05_21_S10_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH05_24_S11_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 322 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 463 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 1014 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 434 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 648 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 502 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 407 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 463 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 412 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 514 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 912 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 308 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 524 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 329 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 345 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 553 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 561 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 507 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 530 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 480 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 444 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 355 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 252 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 545 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 435 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 362 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 304 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 964 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 370 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 262 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 647 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 565 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 263 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 339 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 449 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 538 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 291 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 344 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 231 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 359 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 417 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 651 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 655 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 263 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 467 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 538 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 464 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_64_pilon___frag_2___debris__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_91_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_127_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_145_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_174_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_5__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_356_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 53 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_675_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_701_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_756_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_758_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_781_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_847_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_848_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1121_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1155_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1307_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1434_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1631_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1663_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1780_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1883_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1908_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1969_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2299_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2443_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2730_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2935_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 51 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3228_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3608_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3780_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3784_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3832_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 42 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4105_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4126_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 32 different covered positions) Writing cytosine report for chromosome contig_4203_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4356_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4406_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 172 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4506_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_4539_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4779_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4834_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4936_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4942_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_5029_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_5388_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5414_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5446_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5532_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5565_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5571_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5634_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_5947_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 40 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6313_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6541_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_6615_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6637_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 48 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7201_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_7417_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_7467_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7500_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7560_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7574_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7754_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7785_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7892_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8025_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8041_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8154_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8323_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8388_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 43 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8514_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome scaffold_4415_pilon__uns (stored 13 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 5 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 293 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1797_pilon__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1835_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_248_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2512_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3781_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_482_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4938_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5892_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7378_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7616_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_75_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH05_24_S11_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH05_24_S11_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH07_06_S12_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 343 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 440 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 956 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 502 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 697 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 330 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 418 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 467 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 344 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 434 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 1035 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 294 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 583 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 328 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 366 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 726 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 497 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 545 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 484 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 460 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 386 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 368 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 258 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 483 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 371 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 328 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 308 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 839 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 427 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 268 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 758 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 619 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 286 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 311 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 449 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 596 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 353 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 330 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 276 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 330 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 406 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 719 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 664 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 306 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 411 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 557 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 343 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_145_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_252_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_268_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_5__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 68 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_442_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_476_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_523_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_548_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_701_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_715_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 46 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_847_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1031_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1091_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1206_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1338_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1445_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1513_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1556_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1710_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1780_pilon___frag_2___debris__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1781_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1963_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2087_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2200_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2201_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2278_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2281_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2444_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2509_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2519_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2610_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2627_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2717_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2865_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3203_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3220_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3343_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3495_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3590_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4000_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 38 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_4217_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 32 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 40 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4324_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4378_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_4406_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 200 different covered positions) Writing cytosine report for chromosome contig_4466_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4539_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4803_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5066_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5112_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 53 different covered positions) Writing cytosine report for chromosome contig_5237_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 62 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5479_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_5522_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5526_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5571_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5609_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5630_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5656_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5688_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_5736_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5758_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5796_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5897_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5932_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_6053_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6197_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6298_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_6652_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 42 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6866_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 51 different covered positions) Writing cytosine report for chromosome contig_7031_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7075_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_7085_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7162_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7181_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7235_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7316_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7373_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 46 different covered positions) Writing cytosine report for chromosome contig_7467_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7509_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7579_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7649_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7670_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_7754_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7866_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8001_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8027_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8242_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8261_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8383_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8665_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 31 different covered positions) Writing cytosine report for chromosome scaffold_5852_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 1 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 313 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1439_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_248_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_303_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3320_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4212_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4519_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_50_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5190_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7616_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_798_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_891_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH07_06_S12_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH07_06_S12_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH07_11_S13_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 38 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 419 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 734 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 382 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 441 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 310 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 352 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 94 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 59 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 147 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 613 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 128 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 75 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 185 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 160 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 428 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 205 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 211 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 78 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 275 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 130 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 173 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 110 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 113 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 34 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 85 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 114 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 162 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 44 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 23 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 101 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 66 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 11 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 73 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 101 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 347 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 151 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 314 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 170 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 250 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 455 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 470 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 331 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 221 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 144 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 345 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 200 different covered positions) Writing cytosine report for chromosome contig_61_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_62_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_122_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_176_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_235_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_236_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_238_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_244_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_266_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_395_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_396_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_415_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_429_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_497_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_539_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_543_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_585_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_592_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_686_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_757_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_850_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_873_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_949_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1049_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1118_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1225_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1338_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1340_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_1342_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1372_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1502_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1631_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1646_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1672_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1744_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1830_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1883_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2248_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2253_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_2313_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2376_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_2515_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2520_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2527_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2533_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2560_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2563_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2600_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2610_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2763_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2791_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2881_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2905_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2927_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2929_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2949_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_3073_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_3211_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3358_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3448_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3456_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3514_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3558_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_3585_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3636_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3640_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3643_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3724_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3735_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3758_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3765_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3814_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3830_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 47 different covered positions) Writing cytosine report for chromosome contig_3889_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4069_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4169_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4229_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4257_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4287_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4324_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4356_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4412_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4530_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4539_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4802_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4830_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5014_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5053_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5065_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5126_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5211_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5223_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5295_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5411_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5451_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5565_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5571_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5596_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5645_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5656_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5796_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5825_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5829_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5846_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5889_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5932_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5947_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6038_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_6135_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6136_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6146_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6273_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6404_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6430_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_6647_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6811_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6866_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6891_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6913_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7011_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7013_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7074_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7076_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7085_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7201_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7215_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7235_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7248_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7255_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7344_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7345_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7373_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7397_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_7410_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7509_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7511_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7594_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7818_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7892_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7947_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7984_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_8020_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8025_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8027_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8105_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8158_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8170_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_8206_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8228_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8261_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8262_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8296_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8489_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8546_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8617_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_8665_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_8761_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 4 different covered positions) Writing cytosine report for last chromosome scaffold_4415_pilon__uns (stored 4 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 344 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1125_pilon__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1439_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1460_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_157_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1622_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_172_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_219_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2392_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_282_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3120_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_315_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3320_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3368_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_352_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_372_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3996_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_4246_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4268_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4274_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4389_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_440_pilon__uns Writing cytosine report for not covered chromosome contig_4413_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_482_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4950_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4955_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5002_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_50_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5127_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5226_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5246_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5379_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5637_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5713_pilon__uns Writing cytosine report for not covered chromosome contig_5714_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5873_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5916_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_633_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_6551_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_692_pilon__uns Writing cytosine report for not covered chromosome contig_6932_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7272_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7378_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7464_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7607_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7616_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7734_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7755_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7894_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8232_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8405_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8434_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_11_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH07_11_S13_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH07_11_S13_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH07_24_S14_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 64 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 345 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 689 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 378 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 376 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 314 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 326 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 96 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 93 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 146 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 584 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 159 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 99 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 161 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 222 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 525 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 182 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 181 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 115 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 282 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 151 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 166 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 148 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 113 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 20 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 65 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 179 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 103 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 62 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 10 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 146 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 75 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 24 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 80 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 124 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 417 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 222 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 254 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 181 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 321 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 453 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 452 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 379 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 277 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 153 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 415 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 264 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_61_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_62_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_91_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_122_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_142_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_189_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_210_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_211_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_268_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_352_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_395_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_396_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_415_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_422_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_11__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_585_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_642_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_675_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_686_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_715_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_756_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_762_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_1__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_847_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_852_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_953_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_967_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1091_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1094_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1206_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1207_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1225_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1237_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1315_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1386_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1395_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1445_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1461_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1672_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1744_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1795_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1810_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1815_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1839_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1868_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1923_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1963_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1989_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1991_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2087_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2143_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2201_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2248_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2296_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2299_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2313_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2376_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2391_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2471_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2473_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2507_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2509_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2544_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2609_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2612_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2627_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2629_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2718_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2747_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2767_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2791_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2816_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2830_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2881_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2911_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2928_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2949_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_2965_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3073_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3090_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3127_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3132_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3186_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3203_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3396_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3456_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3580_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3624_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3636_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3724_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3734_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3814_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_3889_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4126_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4169_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4257_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4287_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4291_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4378_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4380_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4412_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4451_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4506_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4517_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4554_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4602_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4623_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4643_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4647_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4693_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4733_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4757_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4763_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4771_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4779_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4803_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4942_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5014_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5081_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5126_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5250_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5388_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5408_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5564_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5589_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5596_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5630_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5656_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5688_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5736_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5833_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5896_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5918_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6047_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6053_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_6135_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6136_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6284_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6298_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6314_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6430_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6541_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6562_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6579_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6698_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6779_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6780_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6866_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6901_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6906_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7070_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7076_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7133_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7184_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7208_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7230_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7237_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7316_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7373_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7393_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7418_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7433_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7579_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7621_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7649_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7672_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7762_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7818_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7829_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7866_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7947_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7963_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7984_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8076_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8105_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8224_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8489_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8503_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8560_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8609_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8617_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8621_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8642_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8647_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8665_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome scaffold_5852_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome scaffold_5852_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 1 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 382 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1071_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1439_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1460_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1492_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_157_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1622_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1655_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_172_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1797_pilon__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_219_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2392_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_248_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_282_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_303_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_315_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3224_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3320_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_372_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3996_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4335_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4389_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4519_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4950_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5002_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_5226_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5246_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5379_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5637_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5714_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5854_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5873_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_633_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6363_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_6551_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6667_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6822_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_726_pilon__uns Writing cytosine report for not covered chromosome contig_7272_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7321_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7464_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7607_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7708_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7734_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7755_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7894_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8232_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8405_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8434_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_11_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH07_24_S14_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH07_24_S14_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH09_02_S15_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 235 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 369 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 820 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 444 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 625 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 279 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 322 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 266 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 281 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 394 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 833 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 210 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 342 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 358 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 290 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 652 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 425 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 351 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 280 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 360 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 277 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 336 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 199 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 271 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 208 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 343 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 246 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 549 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 249 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 222 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 459 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 390 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 130 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 190 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 352 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 457 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 314 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 321 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 268 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 319 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 463 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 581 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 499 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 300 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 321 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 508 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 378 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_189_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_238_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_352_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_396_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_442_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_523_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_547_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_675_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_731_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1121_pilon___frag_3__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1213_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1233_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1338_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1386_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1399_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1497_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1513_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1517_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1540_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1670_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1671_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1810_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1819_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1846_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1883_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1939_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2248_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2255_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2322_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2341_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2929_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2967_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3073_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3102_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3132_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_3203_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3528_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3636_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3671_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3734_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3853_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4105_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_4192_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_4356_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4406_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4451_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 74 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4733_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4757_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_4763_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4877_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_5015_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_5175_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5414_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5571_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5630_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5647_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5833_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 40 different covered positions) Writing cytosine report for chromosome contig_6047_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6064_pilon__uns (stored 74 different covered positions) Writing cytosine report for chromosome contig_6096_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6151_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6175_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6347_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6629_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6719_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6891_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6906_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6915_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6916_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 55 different covered positions) Writing cytosine report for chromosome contig_7027_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7094_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7235_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7248_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7446_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7632_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7742_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7785_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8027_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_8422_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 9 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 13 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 297 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1835_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_315_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4212_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4274_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_4441_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4938_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4955_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5025_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_50_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5637_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7142_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_7321_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7703_pilon__uns Writing cytosine report for not covered chromosome contig_7708_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8434_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_891_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH09_02_S15_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH09_02_S15_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH09_13_S16_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 210 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 481 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 1002 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 395 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 527 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 437 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 477 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 191 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 313 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 360 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 924 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 185 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 265 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 351 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 372 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 648 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 514 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 416 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 292 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 488 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 298 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 324 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 265 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 219 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 171 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 240 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 231 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 487 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 191 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 192 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 452 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 354 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 157 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 269 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 316 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 542 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 306 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 401 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 245 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 321 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 463 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 619 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 535 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 338 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 423 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 559 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 462 different covered positions) Writing cytosine report for chromosome contig_39_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_58_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_85_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_111_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_128_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_142_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_145_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_174_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_176_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_199_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_238_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_266_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_269_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_5__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_338_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_352_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_356_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_363_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_377_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_382_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_395_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_435_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_7__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_11__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_464_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_505_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_523_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_543_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_547_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_590_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_652_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_656_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_675_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_731_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_757_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_762_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_781_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_3__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_898_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_933_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_5__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1049_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1118_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1121_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1225_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1330_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1338_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1372_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1395_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1445_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1497_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1540_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1631_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1729_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1730_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1780_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1830_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1963_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2087_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2100_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2456_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2473_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2507_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_2515_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2610_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2717_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2747_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2763_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2830_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2846_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2928_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_2952_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3073_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3086_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_3127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3132_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3144_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3203_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3424_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3628_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3644_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3724_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3824_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3869_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_4111_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4169_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4287_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4406_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 43 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4647_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4733_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4771_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4803_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4809_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4834_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5066_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5138_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5211_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5223_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5295_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5363_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5431_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5589_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5736_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5758_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5768_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5796_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5833_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5883_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5967_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_6092_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6115_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6136_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6195_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6334_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6347_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6518_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6617_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6638_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6721_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_6761_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6802_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6824_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6855_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6885_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6886_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_6987_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7085_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7094_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7237_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7248_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7410_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7565_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7741_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7762_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7814_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7947_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7984_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8027_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8041_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_8324_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8514_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_8527_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 3 different covered positions) Writing cytosine report for last chromosome scaffold_4415_pilon__uns (stored 6 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 362 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1071_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_1460_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1655_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1797_pilon__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1835_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2322_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2669_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_282_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3368_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4274_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4413_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_4441_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4938_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5042_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5246_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5657_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5714_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6363_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_6551_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6822_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7272_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_7321_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7755_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_803_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_951_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH09_13_S16_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH09_13_S16_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH09_28_S17_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 265 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 330 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 905 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 356 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 538 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 340 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 353 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 427 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 368 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 429 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 878 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 273 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 553 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 254 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 285 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 368 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 485 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 438 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 585 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 401 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 332 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 216 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 215 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 480 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 366 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 354 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 277 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 1038 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 501 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 241 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 638 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 727 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 200 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 398 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 401 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 410 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 285 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 315 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 216 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 250 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 376 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 632 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 318 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 323 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 339 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 489 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 467 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_61_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_64_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_86_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_176_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_338_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_352_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_353_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_382_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_395_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 39 different covered positions) Writing cytosine report for chromosome contig_415_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_11__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_523_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_539_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_547_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_644_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_855_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1121_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1338_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1399_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1556_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1881_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_3__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2274_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2313_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2322_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2391_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2507_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2610_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2763_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3013_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3040_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3197_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3203_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3644_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_3723_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3758_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 99 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 39 different covered positions) Writing cytosine report for chromosome contig_4281_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4412_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4435_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 272 different covered positions) Writing cytosine report for chromosome contig_4468_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4623_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4763_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5015_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5065_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5090_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_5178_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 39 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_5596_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_5657_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5679_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5828_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5829_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 47 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 47 different covered positions) Writing cytosine report for chromosome contig_5964_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_6040_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6135_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6136_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6175_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6267_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6314_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6452_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_6562_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6615_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 42 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6719_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6916_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6919_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_7003_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7011_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7076_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7201_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7410_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7445_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_7476_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7619_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7892_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7939_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7947_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8027_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 28 different covered positions) Writing cytosine report for chromosome contig_8278_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 60 different covered positions) Writing cytosine report for chromosome contig_8422_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome scaffold_4415_pilon__uns (stored 6 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 2 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 293 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1439_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2512_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_372_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3793_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4274_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4389_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_50_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_5479_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6363_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_726_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7703_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7969_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_891_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH09_28_S17_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH09_28_S17_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH10_01_S18_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 257 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 486 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 1053 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 545 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 627 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 432 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 332 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 418 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 380 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 552 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 923 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 286 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 504 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 285 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 336 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 538 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 618 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 467 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 412 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 485 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 376 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 351 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 251 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 423 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 382 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 396 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 315 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 897 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 364 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 246 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 626 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 644 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 259 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 316 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 513 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 509 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 349 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 386 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 297 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 363 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 385 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 747 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 547 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 284 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 401 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 566 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 483 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_79_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_117_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_189_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_203_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_211_pilon___frag_1__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_252_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_352_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_367_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_395_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_396_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_422_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_442_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_476_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_523_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_620_pilon___frag_2___debris__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_686_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_757_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_846_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_958_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_5__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1031_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1094_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_2___debris__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1159_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1229_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1315_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1338_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1434_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1566_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1600_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_1670_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1810_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1881_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1883_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2322_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 54 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_2544_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2563_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2642_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_2710_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 40 different covered positions) Writing cytosine report for chromosome contig_2965_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 31 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 26 different covered positions) Writing cytosine report for chromosome contig_3410_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3723_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3784_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3830_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 31 different covered positions) Writing cytosine report for chromosome contig_4157_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 33 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4301_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4394_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4401_pilon___frag_5__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4406_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4416_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 92 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_4618_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4663_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4664_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4680_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4812_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4834_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 27 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4941_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4944_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4970_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_5015_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_5099_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5434_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5479_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5493_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5565_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5593_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_5657_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 44 different covered positions) Writing cytosine report for chromosome contig_5796_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5829_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5896_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5932_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_6047_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6075_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6078_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6096_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6146_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6175_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6404_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6469_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_6518_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6541_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_6652_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6719_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 73 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7162_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7174_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7201_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7393_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 30 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_7655_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_7829_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7867_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7880_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8025_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8070_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_2___debris__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_8323_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 35 different covered positions) Writing cytosine report for chromosome contig_8422_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8560_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 1 different covered positions) Writing cytosine report for last chromosome scaffold_4415_pilon__uns (stored 8 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 285 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1424_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1527_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1771_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_177_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1963_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_2042_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_204_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2087_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_219_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2392_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2512_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_282_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2879_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2968_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_303_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3132_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3368_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4413_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_4441_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_4539_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4678_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_482_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5066_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5183_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5415_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5444_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_547_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5630_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5765_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5947_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6040_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6913_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7090_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7230_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7321_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_7509_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7884_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7969_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_798_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8106_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8362_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8434_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_848_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_851_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_878_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_891_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH10_01_S18_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH10_01_S18_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH10_08_S19_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 90 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 297 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 618 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 340 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 438 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 316 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 326 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 104 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 143 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 213 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 589 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 217 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 166 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 246 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 211 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 476 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 283 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 238 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 169 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 323 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 181 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 208 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 121 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 139 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 51 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 153 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 172 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 220 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 78 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 67 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 172 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 160 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 79 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 109 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 215 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 363 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 193 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 348 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 171 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 249 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 430 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 470 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 486 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 222 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 205 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 425 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 231 different covered positions) Writing cytosine report for chromosome contig_58_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_64_pilon___frag_2___debris__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_80_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_103_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_172_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_233_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_238_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_266_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_269_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_352_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_353_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_356_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_367_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_377_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_396_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_415_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_418_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_421_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_444_pilon___frag_11__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_514_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_523_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_540_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_547_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_585_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_607_pilon___frag_1__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_675_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_758_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_787_pilon___frag_2___debris__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_816_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_830_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_847_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_848_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_951_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_958_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_3__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_961_pilon___frag_5__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_975_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1063_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_1091_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1134_pilon___frag_3__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1159_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1200_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1229_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1235_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1303_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1387_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1395_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1445_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1671_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1691_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1729_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1819_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1835_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1907_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_1921_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1963_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_1__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2057_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2087_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2100_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_2255_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2317_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2322_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2347_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2430_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2443_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_2475_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2484_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2544_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2552_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2600_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2607_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2610_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2627_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2669_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2747_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2787_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2832_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2874_pilon___frag_3__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2932_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3001_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3073_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3087_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3132_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3144_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3301_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3405_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3436_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3489_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3514_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3689_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3740_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3781_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3793_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3811_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_3835_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_3837_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3883_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4092_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4203_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4212_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4227_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4356_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_4472_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4517_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4539_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4623_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4634_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4672_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4693_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4763_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4771_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4821_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4938_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4942_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5014_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5058_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5066_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_5070_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5175_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5299_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5373_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5408_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5479_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5526_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5590_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5609_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5630_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5657_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5729_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5746_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5748_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5784_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5793_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5796_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5802_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5851_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5892_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_5924_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5947_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_6038_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_6040_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6047_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6064_pilon__uns (stored 20 different covered positions) Writing cytosine report for chromosome contig_6131_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6136_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6363_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6544_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6579_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6637_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_6673_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6750_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6807_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_6906_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_6913_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_6918_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6921_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_6949_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7006_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7013_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7035_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7076_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7230_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7235_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_7373_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7467_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7509_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7533_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7579_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7582_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7616_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7620_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7691_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7785_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7829_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7879_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7884_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7892_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_7969_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_7983_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7984_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8020_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8025_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8070_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_8106_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8560_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_8617_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8642_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_8658_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 9 different covered positions) Writing cytosine report for last chromosome scaffold_5852_pilon___frag_3__uns (stored 11 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 352 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1125_pilon__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1399_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1444_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1460_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_157_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1631_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1655_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1706_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1810_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1883_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1892_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_1939_pilon__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_210_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_2183_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2392_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_248_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_2525_pilon__uns Writing cytosine report for not covered chromosome contig_2527_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2643_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2717_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2725_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2763_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_2949_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_315_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3233_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3236_pilon__uns Writing cytosine report for not covered chromosome contig_3237_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3351_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3421_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3456_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3624_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3732_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3824_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3832_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_395_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4197_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_422_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4480_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4530_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4540_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4707_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4757_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4803_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_482_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4854_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4950_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4955_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4966_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_49_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_50_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5178_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5258_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5295_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_5398_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5587_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5623_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5637_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5681_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5713_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5844_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5849_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_611_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_620_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_62_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6404_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_6551_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6764_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6876_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6976_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7085_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7127_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7255_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7293_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_731_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7378_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7397_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7448_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7521_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7556_pilon__uns Writing cytosine report for not covered chromosome contig_7560_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7565_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_757_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7633_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7755_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7816_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7830_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7894_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7908_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_798_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_803_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8224_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8296_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8318_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8405_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8549_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_891_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_932_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Writing cytosine report for not covered chromosome scaffold_7122_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH10_08_S19_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH10_08_S19_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq! Summary of parameters for genome-wide cytosine report: ============================================================================== Coverage infile: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz Output directory: >< Parent directory: >/gscratch/scrubbed/sr320/031223-dumoar/< Genome directory: >/gscratch/srlab/sr320/data/dumoar/sc-con-genome/< CX context: no (CpG context only, default) Pooling CpG top/bottom strand evidence: yes Genome coordinates used: 0-based (user specified) GZIP compression: no Split by chromosome: no Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp) chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp) chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp) chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp) chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp) chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp) chr PGA_scaffold6__2_contigs__length_4500 (4500 bp) chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp) chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp) chr PGA_scaffold9__2_contigs__length_6774 (6774 bp) chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp) chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp) chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp) chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp) chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp) chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp) chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp) chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp) chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp) chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp) chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp) chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp) chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp) chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp) chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp) chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp) chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp) chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp) chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp) chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp) chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp) chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp) chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp) chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp) chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp) chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp) chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp) chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp) chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp) chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp) chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp) chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp) chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp) chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp) chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp) chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp) chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp) chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp) chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp) chr contig_1001_pilon__uns (24935 bp) chr contig_1002_pilon__uns (4698 bp) chr contig_1008_pilon__uns (57313 bp) chr contig_1013_pilon__uns (9111 bp) chr contig_1014_pilon__uns (44146 bp) chr contig_1015_pilon__uns (40906 bp) chr contig_1019_pilon__uns (8123 bp) chr contig_1020_pilon__uns (6849 bp) chr contig_1023_pilon__uns (6751 bp) chr contig_1027_pilon__uns (11130 bp) chr contig_102_pilon__uns (10606 bp) chr contig_1031_pilon__uns (12490 bp) chr contig_1036_pilon__uns (13977 bp) chr contig_103_pilon__uns (61341 bp) chr contig_1041_pilon__uns (4253 bp) chr contig_1042_pilon__uns (11130 bp) chr contig_1043_pilon__uns (5439 bp) chr contig_1044_pilon__uns (1321 bp) chr contig_1045_pilon__uns (47018 bp) chr contig_1046_pilon__uns (1795 bp) chr contig_1049_pilon__uns (8757 bp) chr contig_1052_pilon__uns (5026 bp) chr contig_1058_pilon___frag_2___debris__uns (1001 bp) chr contig_1058_pilon___frag_4___debris__uns (1001 bp) chr contig_1059_pilon__uns (7499 bp) chr contig_1060_pilon__uns (7596 bp) chr contig_1063_pilon__uns (198857 bp) chr contig_106_pilon__uns (33964 bp) chr contig_1070_pilon__uns (5084 bp) chr contig_1071_pilon__uns (154066 bp) chr contig_1089_pilon__uns (68393 bp) chr contig_1091_pilon__uns (100377 bp) chr contig_1094_pilon__uns (87194 bp) chr contig_1098_pilon__uns (37678 bp) chr contig_1114_pilon__uns (8538 bp) chr contig_1117_pilon__uns (6576 bp) chr contig_1118_pilon__uns (71347 bp) chr contig_111_pilon__uns (9197 bp) chr contig_1120_pilon__uns (58926 bp) chr contig_1121_pilon___frag_1__uns (26964 bp) chr contig_1121_pilon___frag_2___debris__uns (5001 bp) chr contig_1121_pilon___frag_3__uns (119475 bp) chr contig_1125_pilon__uns (66086 bp) chr contig_1130_pilon__uns (6460 bp) chr contig_1131_pilon__uns (987 bp) chr contig_1134_pilon___frag_1__uns (61276 bp) chr contig_1134_pilon___frag_2___debris__uns (5001 bp) chr contig_1134_pilon___frag_3__uns (90619 bp) chr contig_1139_pilon__uns (1537 bp) chr contig_1143_pilon__uns (12495 bp) chr contig_1144_pilon__uns (10336 bp) chr contig_1148_pilon__uns (7436 bp) chr contig_1152_pilon__uns (1633 bp) chr contig_1153_pilon__uns (2819 bp) chr contig_1155_pilon___frag_2___debris__uns (2001 bp) chr contig_1155_pilon___frag_3__uns (60624 bp) chr contig_1159_pilon__uns (16135 bp) chr contig_117_pilon__uns (63296 bp) chr contig_1180_pilon__uns (31661 bp) chr contig_1183_pilon__uns (11012 bp) chr contig_1184_pilon__uns (38297 bp) chr contig_1200_pilon__uns (30844 bp) chr contig_1203_pilon__uns (8323 bp) chr contig_1206_pilon__uns (102534 bp) chr contig_1207_pilon__uns (70975 bp) chr contig_120_pilon__uns (29591 bp) chr contig_1213_pilon__uns (40960 bp) chr contig_1217_pilon__uns (8036 bp) chr contig_121_pilon__uns (23633 bp) chr contig_1223_pilon__uns (7293 bp) chr contig_1225_pilon__uns (79347 bp) chr contig_1226_pilon__uns (4219 bp) chr contig_1229_pilon__uns (19835 bp) chr contig_122_pilon__uns (76521 bp) chr contig_1232_pilon__uns (1188 bp) chr contig_1233_pilon___frag_1__uns (42810 bp) chr contig_1233_pilon___frag_2___debris__uns (1001 bp) chr contig_1233_pilon___frag_3__uns (30586 bp) chr contig_1235_pilon__uns (24777 bp) chr contig_1237_pilon__uns (7501 bp) chr contig_1239_pilon__uns (21394 bp) chr contig_1243_pilon__uns (13143 bp) chr contig_1244_pilon__uns (46126 bp) chr contig_1251_pilon__uns (24697 bp) chr contig_1254_pilon__uns (138137 bp) chr contig_1258_pilon__uns (43372 bp) chr contig_1260_pilon__uns (1040 bp) chr contig_126_pilon__uns (8704 bp) chr contig_1271_pilon__uns (19214 bp) chr contig_1274_pilon__uns (13789 bp) chr contig_1276_pilon__uns (9825 bp) chr contig_127_pilon__uns (58735 bp) chr contig_1281_pilon__uns (9607 bp) chr contig_1283_pilon__uns (6790 bp) chr contig_128_pilon__uns (60259 bp) chr contig_1291_pilon__uns (51069 bp) chr contig_1293_pilon__uns (9825 bp) chr contig_1301_pilon__uns (59436 bp) chr contig_1303_pilon__uns (140324 bp) chr contig_1304_pilon__uns (6151 bp) chr contig_1307_pilon__uns (11511 bp) chr contig_1308_pilon__uns (5667 bp) chr contig_1315_pilon__uns (68888 bp) chr contig_1318_pilon__uns (18219 bp) chr contig_1325_pilon__uns (4706 bp) chr contig_1329_pilon__uns (46824 bp) chr contig_1330_pilon__uns (979 bp) chr contig_1338_pilon__uns (53862 bp) chr contig_1339_pilon__uns (4814 bp) chr contig_1340_pilon__uns (1169 bp) chr contig_1342_pilon__uns (53712 bp) chr contig_1352_pilon__uns (6426 bp) chr contig_1353_pilon__uns (3478 bp) chr contig_1367_pilon__uns (3758 bp) chr contig_1368_pilon__uns (6607 bp) chr contig_1372_pilon___frag_1__uns (38395 bp) chr contig_1372_pilon___frag_2___debris__uns (5001 bp) chr contig_1372_pilon___frag_3__uns (129081 bp) chr contig_1374_pilon__uns (21348 bp) chr contig_1386_pilon__uns (79771 bp) chr contig_1387_pilon__uns (7220 bp) chr contig_1395_pilon__uns (53397 bp) chr contig_1398_pilon__uns (6798 bp) chr contig_1399_pilon__uns (93880 bp) chr contig_1409_pilon__uns (10697 bp) chr contig_140_pilon__uns (4078 bp) chr contig_1410_pilon__uns (9598 bp) chr contig_1415_pilon__uns (51250 bp) chr contig_1419_pilon__uns (2382 bp) chr contig_1422_pilon__uns (45990 bp) chr contig_1424_pilon__uns (66490 bp) chr contig_1426_pilon__uns (9478 bp) chr contig_1427_pilon__uns (9638 bp) chr contig_142_pilon__uns (108204 bp) chr contig_1434_pilon__uns (78096 bp) chr contig_1438_pilon__uns (14730 bp) chr contig_1439_pilon__uns (119808 bp) chr contig_1442_pilon__uns (127178 bp) chr contig_1444_pilon__uns (45820 bp) chr contig_1445_pilon__uns (66094 bp) chr contig_1451_pilon__uns (4996 bp) chr contig_1452_pilon__uns (7524 bp) chr contig_1454_pilon__uns (2651 bp) chr contig_145_pilon__uns (51762 bp) chr contig_1460_pilon__uns (63184 bp) chr contig_1461_pilon__uns (43545 bp) chr contig_146_pilon__uns (27627 bp) chr contig_1472_pilon__uns (29562 bp) chr contig_1473_pilon__uns (1236 bp) chr contig_1484_pilon__uns (49420 bp) chr contig_1488_pilon__uns (17173 bp) chr contig_1492_pilon__uns (81729 bp) chr contig_1493_pilon__uns (4152 bp) chr contig_1497_pilon__uns (129627 bp) chr contig_1498_pilon__uns (1153 bp) chr contig_1502_pilon__uns (129747 bp) chr contig_1511_pilon__uns (5883 bp) chr contig_1512_pilon__uns (7280 bp) chr contig_1513_pilon__uns (48467 bp) chr contig_1517_pilon__uns (64708 bp) chr contig_1522_pilon__uns (4286 bp) chr contig_1523_pilon__uns (611 bp) chr contig_1525_pilon__uns (332504 bp) chr contig_1527_pilon__uns (66946 bp) chr contig_1528_pilon__uns (4219 bp) chr contig_1530_pilon__uns (9690 bp) chr contig_1533_pilon__uns (268396 bp) chr contig_1537_pilon__uns (8915 bp) chr contig_153_pilon__uns (3777 bp) chr contig_1540_pilon__uns (95588 bp) chr contig_1556_pilon__uns (192087 bp) chr contig_155_pilon__uns (4791 bp) chr contig_1560_pilon__uns (333098 bp) chr contig_1566_pilon__uns (84111 bp) chr contig_1571_pilon__uns (14979 bp) chr contig_157_pilon__uns (49266 bp) chr contig_1599_pilon__uns (36273 bp) chr contig_1600_pilon__uns (89161 bp) chr contig_1609_pilon__uns (5790 bp) chr contig_1611_pilon__uns (3832 bp) chr contig_1616_pilon__uns (11738 bp) chr contig_1620_pilon__uns (7185 bp) chr contig_1622_pilon__uns (135668 bp) chr contig_1628_pilon__uns (13962 bp) chr contig_1631_pilon__uns (41184 bp) chr contig_1638_pilon__uns (19446 bp) chr contig_1643_pilon__uns (7932 bp) chr contig_1645_pilon__uns (5513 bp) chr contig_1646_pilon__uns (70602 bp) chr contig_1650_pilon__uns (3556 bp) chr contig_1652_pilon__uns (3485 bp) chr contig_1655_pilon__uns (164032 bp) chr contig_1663_pilon__uns (75097 bp) chr contig_1664_pilon__uns (5725 bp) chr contig_1668_pilon__uns (28516 bp) chr contig_166_pilon___frag_2___debris__uns (5001 bp) chr contig_1670_pilon__uns (42678 bp) chr contig_1671_pilon__uns (114058 bp) chr contig_1672_pilon__uns (66804 bp) chr contig_1676_pilon__uns (47916 bp) chr contig_1678_pilon__uns (5925 bp) chr contig_1680_pilon__uns (11792 bp) chr contig_1681_pilon__uns (10846 bp) chr contig_1685_pilon__uns (5172 bp) chr contig_1689_pilon__uns (2288 bp) chr contig_1691_pilon__uns (2249 bp) chr contig_1697_pilon__uns (17619 bp) chr contig_1706_pilon__uns (82540 bp) chr contig_1710_pilon__uns (4131 bp) chr contig_1714_pilon__uns (24313 bp) chr contig_1716_pilon__uns (54164 bp) chr contig_1720_pilon__uns (695 bp) chr contig_1729_pilon__uns (52598 bp) chr contig_172_pilon__uns (91557 bp) chr contig_1730_pilon__uns (32295 bp) chr contig_1733_pilon__uns (5020 bp) chr contig_1734_pilon__uns (1363 bp) chr contig_1737_pilon__uns (47521 bp) chr contig_1739_pilon__uns (5871 bp) chr contig_1740_pilon__uns (5852 bp) chr contig_1742_pilon__uns (4028 bp) chr contig_1743_pilon__uns (8595 bp) chr contig_1744_pilon__uns (604 bp) chr contig_1745_pilon__uns (1561 bp) chr contig_174_pilon__uns (54007 bp) chr contig_1752_pilon__uns (10260 bp) chr contig_1753_pilon__uns (1883 bp) chr contig_1755_pilon__uns (2286 bp) chr contig_1760_pilon__uns (5666 bp) chr contig_1761_pilon__uns (7943 bp) chr contig_1768_pilon__uns (9947 bp) chr contig_176_pilon__uns (111249 bp) chr contig_1770_pilon__uns (2417 bp) chr contig_1771_pilon__uns (102605 bp) chr contig_1772_pilon__uns (2922 bp) chr contig_1773_pilon__uns (6935 bp) chr contig_177_pilon__uns (55932 bp) chr contig_1780_pilon___frag_1__uns (45140 bp) chr contig_1780_pilon___frag_2___debris__uns (5001 bp) chr contig_1780_pilon___frag_3__uns (50729 bp) chr contig_1781_pilon__uns (61091 bp) chr contig_1787_pilon__uns (1062 bp) chr contig_1789_pilon___frag_2___debris__uns (5001 bp) chr contig_1795_pilon___frag_1__uns (33876 bp) chr contig_1795_pilon___frag_2___debris__uns (1001 bp) chr contig_1797_pilon__uns (175015 bp) chr contig_1801_pilon___frag_2___debris__uns (3001 bp) chr contig_180_pilon__uns (33499 bp) chr contig_1810_pilon__uns (153616 bp) chr contig_1811_pilon__uns (7605 bp) chr contig_1815_pilon__uns (35821 bp) chr contig_1816_pilon__uns (971 bp) chr contig_1819_pilon__uns (167132 bp) chr contig_1829_pilon__uns (5598 bp) chr contig_1830_pilon__uns (69382 bp) chr contig_1834_pilon__uns (55318 bp) chr contig_1835_pilon__uns (34243 bp) chr contig_1839_pilon__uns (125770 bp) chr contig_1840_pilon__uns (1100 bp) chr contig_1846_pilon__uns (76239 bp) chr contig_1858_pilon__uns (7093 bp) chr contig_185_pilon__uns (275460 bp) chr contig_1864_pilon__uns (14997 bp) chr contig_1868_pilon__uns (52567 bp) chr contig_1869_pilon__uns (5859 bp) chr contig_1870_pilon__uns (7657 bp) chr contig_1875_pilon__uns (659 bp) chr contig_1877_pilon__uns (22793 bp) chr contig_1878_pilon__uns (1286 bp) chr contig_1881_pilon__uns (121974 bp) chr contig_1883_pilon__uns (42930 bp) chr contig_1888_pilon__uns (10580 bp) chr contig_1892_pilon__uns (196776 bp) chr contig_1896_pilon__uns (48012 bp) chr contig_189_pilon__uns (97499 bp) chr contig_1902_pilon__uns (58128 bp) chr contig_1904_pilon__uns (48727 bp) chr contig_1907_pilon__uns (89777 bp) chr contig_1908_pilon__uns (73277 bp) chr contig_190_pilon___frag_1__uns (111977 bp) chr contig_190_pilon___frag_2___debris__uns (5001 bp) chr contig_1916_pilon__uns (6751 bp) chr contig_1921_pilon__uns (53726 bp) chr contig_1923_pilon___frag_1__uns (77806 bp) chr contig_1923_pilon___frag_2___debris__uns (2001 bp) chr contig_1923_pilon___frag_3__uns (66044 bp) chr contig_1924_pilon__uns (78227 bp) chr contig_1925_pilon__uns (6811 bp) chr contig_1926_pilon__uns (2660 bp) chr contig_1929_pilon___frag_2___debris__uns (5001 bp) chr contig_1931_pilon___frag_1__uns (43524 bp) chr contig_1931_pilon___frag_2___debris__uns (3001 bp) chr contig_1931_pilon___frag_3__uns (27001 bp) chr contig_1931_pilon___frag_4___debris__uns (3001 bp) chr contig_1931_pilon___frag_5__uns (83967 bp) chr contig_1939_pilon__uns (14772 bp) chr contig_1940_pilon__uns (24723 bp) chr contig_1943_pilon__uns (9260 bp) chr contig_1945_pilon__uns (7142 bp) chr contig_1962_pilon__uns (3945 bp) chr contig_1963_pilon__uns (99819 bp) chr contig_1965_pilon__uns (7850 bp) chr contig_1969_pilon__uns (115934 bp) chr contig_1974_pilon__uns (17359 bp) chr contig_1989_pilon__uns (31765 bp) chr contig_1991_pilon__uns (3288 bp) chr contig_1993_pilon___frag_1__uns (145360 bp) chr contig_1993_pilon___frag_2___debris__uns (5001 bp) chr contig_1993_pilon___frag_3__uns (64133 bp) chr contig_1998_pilon__uns (826 bp) chr contig_199_pilon__uns (151342 bp) chr contig_1_pilon__uns (81548 bp) chr contig_2001_pilon__uns (10224 bp) chr contig_2002_pilon__uns (30357 bp) chr contig_2010_pilon__uns (4207 bp) chr contig_2014_pilon__uns (596 bp) chr contig_203_pilon__uns (74569 bp) chr contig_2042_pilon__uns (65692 bp) chr contig_2049_pilon__uns (1954 bp) chr contig_204_pilon__uns (196437 bp) chr contig_2057_pilon__uns (331809 bp) chr contig_2060_pilon__uns (38054 bp) chr contig_2068_pilon__uns (933 bp) chr contig_2069_pilon__uns (1150 bp) chr contig_206_pilon__uns (12803 bp) chr contig_2078_pilon__uns (309 bp) chr contig_2087_pilon__uns (14648 bp) chr contig_2093_pilon__uns (555 bp) chr contig_2098_pilon__uns (4281 bp) chr contig_2100_pilon__uns (12962 bp) chr contig_210_pilon__uns (104705 bp) chr contig_2111_pilon__uns (579 bp) chr contig_2112_pilon__uns (19422 bp) chr contig_211_pilon___frag_1__uns (63350 bp) chr contig_211_pilon___frag_2___debris__uns (2001 bp) chr contig_211_pilon___frag_3__uns (14643 bp) chr contig_2122_pilon__uns (4263 bp) chr contig_2126_pilon__uns (905 bp) chr contig_2131_pilon__uns (680 bp) chr contig_2139_pilon__uns (562 bp) chr contig_2140_pilon__uns (31337 bp) chr contig_2141_pilon__uns (607 bp) chr contig_2143_pilon__uns (33651 bp) chr contig_2149_pilon__uns (238 bp) chr contig_2153_pilon__uns (14315 bp) chr contig_2164_pilon__uns (5315 bp) chr contig_2165_pilon__uns (1319 bp) chr contig_2167_pilon__uns (947 bp) chr contig_2168_pilon__uns (574 bp) chr contig_2176_pilon___frag_2___debris__uns (3001 bp) chr contig_217_pilon__uns (59632 bp) chr contig_2180_pilon__uns (53284 bp) chr contig_2182_pilon__uns (12085 bp) chr contig_2183_pilon__uns (111072 bp) chr contig_218_pilon__uns (51761 bp) chr contig_2192_pilon__uns (14220 bp) chr contig_2194_pilon__uns (15147 bp) chr contig_2198_pilon__uns (526 bp) chr contig_219_pilon__uns (100718 bp) chr contig_2200_pilon__uns (620 bp) chr contig_2201_pilon__uns (614 bp) chr contig_2207_pilon__uns (612 bp) chr contig_2209_pilon__uns (601 bp) chr contig_220_pilon___frag_1__uns (105323 bp) chr contig_220_pilon___frag_2___debris__uns (5001 bp) chr contig_220_pilon___frag_3__uns (57273 bp) chr contig_2213_pilon__uns (3192 bp) chr contig_2215_pilon__uns (645 bp) chr contig_2216_pilon__uns (971 bp) chr contig_2236_pilon__uns (641 bp) chr contig_2238_pilon__uns (621 bp) chr contig_223_pilon__uns (18750 bp) chr contig_2240_pilon__uns (517 bp) chr contig_2242_pilon__uns (822 bp) chr contig_2245_pilon__uns (518 bp) chr contig_2247_pilon__uns (3006 bp) chr contig_2248_pilon__uns (10338 bp) chr contig_2249_pilon__uns (19158 bp) chr contig_2250_pilon__uns (1328 bp) chr contig_2251_pilon__uns (835 bp) chr contig_2253_pilon__uns (2210 bp) chr contig_2254_pilon__uns (83743 bp) chr contig_2255_pilon__uns (96187 bp) chr contig_2259_pilon__uns (4316 bp) chr contig_225_pilon__uns (2653 bp) chr contig_2260_pilon__uns (2598 bp) chr contig_2262_pilon__uns (535 bp) chr contig_2265_pilon__uns (1986 bp) chr contig_2271_pilon__uns (1359 bp) chr contig_2274_pilon__uns (94906 bp) chr contig_2278_pilon__uns (659 bp) chr contig_2280_pilon__uns (36570 bp) chr contig_2281_pilon__uns (1492 bp) chr contig_2284_pilon__uns (1520 bp) chr contig_2286_pilon__uns (236878 bp) chr contig_2288_pilon__uns (1805 bp) chr contig_2289_pilon__uns (3280 bp) chr contig_2290_pilon__uns (2724 bp) chr contig_2291_pilon__uns (1746 bp) chr contig_2292_pilon__uns (2233 bp) chr contig_2294_pilon__uns (1453 bp) chr contig_2295_pilon__uns (73788 bp) chr contig_2296_pilon__uns (1506 bp) chr contig_2297_pilon__uns (836 bp) chr contig_2299_pilon__uns (36259 bp) chr contig_2302_pilon__uns (1130 bp) chr contig_2304_pilon__uns (501 bp) chr contig_2306_pilon__uns (2728 bp) chr contig_2309_pilon__uns (219 bp) chr contig_2311_pilon__uns (2500 bp) chr contig_2312_pilon__uns (1505 bp) chr contig_2313_pilon__uns (12568 bp) chr contig_2316_pilon__uns (3744 bp) chr contig_2317_pilon__uns (1549 bp) chr contig_2318_pilon__uns (521 bp) chr contig_2320_pilon__uns (840 bp) chr contig_2321_pilon__uns (2166 bp) chr contig_2322_pilon__uns (145225 bp) chr contig_2325_pilon__uns (703 bp) chr contig_2326_pilon__uns (7523 bp) chr contig_2333_pilon__uns (2068 bp) chr contig_2334_pilon__uns (1491 bp) chr contig_2336_pilon__uns (1687 bp) chr contig_2337_pilon__uns (2645 bp) chr contig_2339_pilon__uns (2130 bp) chr contig_233_pilon__uns (80815 bp) chr contig_2341_pilon__uns (1483 bp) chr contig_2344_pilon__uns (2017 bp) chr contig_2345_pilon___frag_1__uns (373001 bp) chr contig_2345_pilon___frag_2___debris__uns (25001 bp) chr contig_2345_pilon___frag_3__uns (285820 bp) chr contig_2347_pilon__uns (125671 bp) chr contig_234_pilon__uns (4757 bp) chr contig_2354_pilon__uns (573 bp) chr contig_2355_pilon__uns (3973 bp) chr contig_2357_pilon__uns (4960 bp) chr contig_2358_pilon__uns (975 bp) chr contig_235_pilon__uns (7871 bp) chr contig_2360_pilon__uns (811 bp) chr contig_2362_pilon__uns (724 bp) chr contig_2363_pilon__uns (1746 bp) chr contig_2364_pilon__uns (3331 bp) chr contig_2365_pilon__uns (2077 bp) chr contig_2367_pilon__uns (547 bp) chr contig_2368_pilon__uns (395 bp) chr contig_2369_pilon__uns (3792 bp) chr contig_236_pilon__uns (36222 bp) chr contig_2370_pilon__uns (1473 bp) chr contig_2376_pilon__uns (28699 bp) chr contig_2377_pilon__uns (1055 bp) chr contig_2378_pilon__uns (14061 bp) chr contig_2388_pilon__uns (1152 bp) chr contig_238_pilon__uns (83364 bp) chr contig_2390_pilon__uns (738 bp) chr contig_2391_pilon__uns (811 bp) chr contig_2392_pilon__uns (26634 bp) chr contig_2399_pilon__uns (2663 bp) chr contig_239_pilon__uns (16492 bp) chr contig_23_pilon___frag_2___debris__uns (5001 bp) chr contig_2401_pilon__uns (653 bp) chr contig_2402_pilon__uns (322 bp) chr contig_2405_pilon__uns (712 bp) chr contig_2409_pilon__uns (1319 bp) chr contig_2411_pilon__uns (1073 bp) chr contig_2416_pilon__uns (1050 bp) chr contig_2417_pilon__uns (826 bp) chr contig_2418_pilon__uns (558 bp) chr contig_2421_pilon__uns (763 bp) chr contig_2423_pilon__uns (415 bp) chr contig_2427_pilon__uns (1624 bp) chr contig_2430_pilon__uns (60849 bp) chr contig_2433_pilon__uns (1823 bp) chr contig_2434_pilon__uns (7012 bp) chr contig_2435_pilon__uns (9205 bp) chr contig_2439_pilon__uns (12539 bp) chr contig_2440_pilon__uns (7010 bp) chr contig_2443_pilon__uns (81609 bp) chr contig_2444_pilon__uns (1088 bp) chr contig_2446_pilon__uns (1145 bp) chr contig_2449_pilon__uns (1704 bp) chr contig_244_pilon__uns (57586 bp) chr contig_2455_pilon__uns (1253 bp) chr contig_2456_pilon__uns (31799 bp) chr contig_2457_pilon__uns (1260 bp) chr contig_2459_pilon__uns (531 bp) chr contig_2462_pilon__uns (2784 bp) chr contig_2463_pilon__uns (685 bp) chr contig_2466_pilon__uns (2353 bp) chr contig_2469_pilon__uns (2167 bp) chr contig_2471_pilon__uns (3449 bp) chr contig_2473_pilon__uns (6369 bp) chr contig_2475_pilon__uns (30412 bp) chr contig_2476_pilon__uns (540 bp) chr contig_2477_pilon__uns (1465 bp) chr contig_247_pilon___frag_2___debris__uns (5001 bp) chr contig_2480_pilon__uns (551 bp) chr contig_2484_pilon__uns (1677 bp) chr contig_2486_pilon__uns (509 bp) chr contig_2487_pilon__uns (5754 bp) chr contig_248_pilon__uns (159208 bp) chr contig_2490_pilon__uns (438 bp) chr contig_2491_pilon__uns (911 bp) chr contig_2492_pilon___frag_1__uns (10126 bp) chr contig_2492_pilon___frag_2___debris__uns (5001 bp) chr contig_2492_pilon___frag_3__uns (154682 bp) chr contig_2494_pilon__uns (637 bp) chr contig_2497_pilon__uns (704 bp) chr contig_2499_pilon__uns (1368 bp) chr contig_2500_pilon__uns (727 bp) chr contig_2503_pilon__uns (177249 bp) chr contig_2507_pilon__uns (19350 bp) chr contig_2509_pilon__uns (43484 bp) chr contig_2510_pilon__uns (22480 bp) chr contig_2512_pilon__uns (79056 bp) chr contig_2513_pilon__uns (763 bp) chr contig_2515_pilon__uns (38993 bp) chr contig_2517_pilon__uns (1251 bp) chr contig_2518_pilon__uns (973 bp) chr contig_2519_pilon__uns (110862 bp) chr contig_251_pilon__uns (15036 bp) chr contig_2520_pilon__uns (741 bp) chr contig_2525_pilon__uns (4277 bp) chr contig_2527_pilon__uns (62155 bp) chr contig_252_pilon__uns (74166 bp) chr contig_2533_pilon__uns (36092 bp) chr contig_2535_pilon__uns (2095 bp) chr contig_2536_pilon__uns (983 bp) chr contig_2539_pilon__uns (261 bp) chr contig_2540_pilon__uns (770 bp) chr contig_2544_pilon__uns (14201 bp) chr contig_2549_pilon__uns (1666 bp) chr contig_2550_pilon__uns (2710 bp) chr contig_2551_pilon__uns (1009 bp) chr contig_2552_pilon__uns (52219 bp) chr contig_2555_pilon__uns (665 bp) chr contig_2560_pilon__uns (18273 bp) chr contig_2563_pilon__uns (9393 bp) chr contig_2564_pilon__uns (2005 bp) chr contig_2565_pilon__uns (632 bp) chr contig_2566_pilon__uns (225 bp) chr contig_2569_pilon__uns (1094 bp) chr contig_256_pilon__uns (38364 bp) chr contig_2570_pilon__uns (8061 bp) chr contig_2572_pilon__uns (3376 bp) chr contig_2574_pilon__uns (554 bp) chr contig_2587_pilon__uns (7725 bp) chr contig_2588_pilon__uns (652 bp) chr contig_2594_pilon__uns (9117 bp) chr contig_2595_pilon__uns (601 bp) chr contig_2596_pilon__uns (819 bp) chr contig_2598_pilon__uns (1919 bp) chr contig_2600_pilon__uns (25232 bp) chr contig_2607_pilon__uns (51272 bp) chr contig_2608_pilon__uns (2986 bp) chr contig_2609_pilon__uns (25503 bp) chr contig_260_pilon__uns (2161 bp) chr contig_2610_pilon__uns (18784 bp) chr contig_2612_pilon__uns (63149 bp) chr contig_2613_pilon__uns (4485 bp) chr contig_2614_pilon__uns (537 bp) chr contig_2617_pilon__uns (848 bp) chr contig_2618_pilon__uns (855 bp) chr contig_2619_pilon__uns (4174 bp) chr contig_2620_pilon__uns (1052 bp) chr contig_2627_pilon__uns (82536 bp) chr contig_2628_pilon__uns (530 bp) chr contig_2629_pilon___frag_1__uns (65338 bp) chr contig_2629_pilon___frag_2___debris__uns (3001 bp) chr contig_2629_pilon___frag_3__uns (50921 bp) chr contig_262_pilon__uns (1589 bp) chr contig_2630_pilon__uns (205 bp) chr contig_2637_pilon__uns (1206 bp) chr contig_2639_pilon__uns (17570 bp) chr contig_2641_pilon__uns (505 bp) chr contig_2642_pilon__uns (265261 bp) chr contig_2643_pilon__uns (70227 bp) chr contig_2646_pilon__uns (669 bp) chr contig_2650_pilon__uns (809 bp) chr contig_2651_pilon__uns (1228 bp) chr contig_2653_pilon__uns (728 bp) chr contig_2654_pilon__uns (3416 bp) chr contig_2656_pilon__uns (1327 bp) chr contig_2657_pilon__uns (205 bp) chr contig_2663_pilon__uns (1130 bp) chr contig_2664_pilon__uns (4709 bp) chr contig_2666_pilon__uns (2068 bp) chr contig_2667_pilon__uns (509 bp) chr contig_2669_pilon__uns (103544 bp) chr contig_266_pilon__uns (26708 bp) chr contig_2670_pilon__uns (39150 bp) chr contig_2671_pilon__uns (692 bp) chr contig_2672_pilon__uns (1704 bp) chr contig_2676_pilon__uns (1309 bp) chr contig_2677_pilon__uns (2526 bp) chr contig_2678_pilon__uns (459 bp) chr contig_2679_pilon__uns (1950 bp) chr contig_2683_pilon__uns (487 bp) chr contig_2687_pilon__uns (3343 bp) chr contig_268_pilon__uns (147305 bp) chr contig_2694_pilon__uns (2395 bp) chr contig_2695_pilon__uns (1546 bp) chr contig_2699_pilon__uns (226254 bp) chr contig_269_pilon__uns (60078 bp) chr contig_2702_pilon__uns (1751 bp) chr contig_2706_pilon__uns (1234 bp) chr contig_2708_pilon__uns (524 bp) chr contig_2710_pilon__uns (23943 bp) chr contig_2714_pilon__uns (574 bp) chr contig_2717_pilon__uns (2540 bp) chr contig_2718_pilon__uns (48717 bp) chr contig_2719_pilon__uns (420 bp) chr contig_2722_pilon__uns (4397 bp) chr contig_2724_pilon__uns (1666 bp) chr contig_2725_pilon__uns (24535 bp) chr contig_2727_pilon__uns (2113 bp) chr contig_2730_pilon__uns (62651 bp) chr contig_2732_pilon__uns (506 bp) chr contig_2735_pilon__uns (17374 bp) chr contig_2736_pilon__uns (704 bp) chr contig_2738_pilon__uns (1318 bp) chr contig_2740_pilon__uns (539 bp) chr contig_2745_pilon__uns (1908 bp) chr contig_2747_pilon__uns (1184 bp) chr contig_2750_pilon__uns (474 bp) chr contig_2751_pilon__uns (550 bp) chr contig_2753_pilon__uns (2549 bp) chr contig_2758_pilon__uns (977 bp) chr contig_2760_pilon__uns (1093 bp) chr contig_2763_pilon__uns (111733 bp) chr contig_2765_pilon__uns (1704 bp) chr contig_2766_pilon__uns (785 bp) chr contig_2767_pilon__uns (9244 bp) chr contig_2771_pilon__uns (960 bp) chr contig_2773_pilon__uns (1128 bp) chr contig_2775_pilon__uns (2933 bp) chr contig_2777_pilon__uns (1493 bp) chr contig_2778_pilon__uns (1109 bp) chr contig_2779_pilon__uns (924 bp) chr contig_2782_pilon__uns (2365 bp) chr contig_2787_pilon__uns (61885 bp) chr contig_2788_pilon__uns (466 bp) chr contig_2791_pilon__uns (12555 bp) chr contig_2792_pilon__uns (1099 bp) chr contig_2811_pilon__uns (1204 bp) chr contig_2815_pilon__uns (1441 bp) chr contig_2816_pilon__uns (23180 bp) chr contig_2817_pilon__uns (517 bp) chr contig_2819_pilon__uns (2116 bp) chr contig_2820_pilon__uns (773 bp) chr contig_2822_pilon__uns (1551 bp) chr contig_2823_pilon__uns (1551 bp) chr contig_2824_pilon__uns (503 bp) chr contig_2828_pilon__uns (1987 bp) chr contig_2829_pilon__uns (3830 bp) chr contig_282_pilon__uns (114431 bp) chr contig_2830_pilon__uns (4737 bp) chr contig_2832_pilon__uns (1513 bp) chr contig_2834_pilon__uns (1295 bp) chr contig_2835_pilon__uns (2015 bp) chr contig_2836_pilon__uns (1051 bp) chr contig_2838_pilon__uns (3820 bp) chr contig_2840_pilon__uns (1042 bp) chr contig_2841_pilon__uns (958 bp) chr contig_2846_pilon__uns (12621 bp) chr contig_2851_pilon__uns (478 bp) chr contig_2856_pilon__uns (982 bp) chr contig_2857_pilon__uns (874 bp) chr contig_2858_pilon__uns (507 bp) chr contig_2859_pilon__uns (548 bp) chr contig_2861_pilon__uns (1349 bp) chr contig_2865_pilon__uns (2328 bp) chr contig_2867_pilon__uns (3865 bp) chr contig_2872_pilon__uns (3672 bp) chr contig_2874_pilon___frag_1__uns (101668 bp) chr contig_2874_pilon___frag_2___debris__uns (3001 bp) chr contig_2874_pilon___frag_3__uns (33619 bp) chr contig_2875_pilon__uns (10005 bp) chr contig_2878_pilon__uns (586 bp) chr contig_2879_pilon__uns (2631 bp) chr contig_2881_pilon__uns (29620 bp) chr contig_2882_pilon__uns (9022 bp) chr contig_2883_pilon__uns (632 bp) chr contig_2884_pilon__uns (583 bp) chr contig_2885_pilon__uns (1069 bp) chr contig_2886_pilon__uns (585 bp) chr contig_2889_pilon__uns (5611 bp) chr contig_288_pilon__uns (31635 bp) chr contig_2894_pilon__uns (5284 bp) chr contig_2895_pilon__uns (522 bp) chr contig_2896_pilon__uns (801 bp) chr contig_289_pilon___frag_2___debris__uns (2001 bp) chr contig_289_pilon___frag_3__uns (43001 bp) chr contig_289_pilon___frag_4___debris__uns (2001 bp) chr contig_289_pilon___frag_5__uns (28001 bp) chr contig_289_pilon___frag_6___debris__uns (2001 bp) chr contig_289_pilon___frag_7__uns (115135 bp) chr contig_2900_pilon__uns (611 bp) chr contig_2901_pilon__uns (427 bp) chr contig_2905_pilon__uns (1723 bp) chr contig_2906_pilon__uns (557 bp) chr contig_2909_pilon__uns (1695 bp) chr contig_2911_pilon__uns (1067 bp) chr contig_2920_pilon__uns (2449 bp) chr contig_2921_pilon__uns (511 bp) chr contig_2922_pilon__uns (1042 bp) chr contig_2923_pilon__uns (724 bp) chr contig_2924_pilon__uns (1221 bp) chr contig_2926_pilon__uns (687 bp) chr contig_2927_pilon__uns (12971 bp) chr contig_2928_pilon__uns (521 bp) chr contig_2929_pilon__uns (62462 bp) chr contig_2932_pilon__uns (7023 bp) chr contig_2934_pilon__uns (539 bp) chr contig_2935_pilon__uns (537 bp) chr contig_2936_pilon__uns (657 bp) chr contig_2940_pilon__uns (3555 bp) chr contig_2941_pilon__uns (526 bp) chr contig_2942_pilon__uns (5609 bp) chr contig_2943_pilon__uns (554 bp) chr contig_2946_pilon__uns (1412 bp) chr contig_2948_pilon__uns (2064 bp) chr contig_2949_pilon__uns (45798 bp) chr contig_294_pilon__uns (4853 bp) chr contig_2950_pilon__uns (202324 bp) chr contig_2951_pilon__uns (566 bp) chr contig_2952_pilon__uns (75605 bp) chr contig_2953_pilon__uns (1075 bp) chr contig_2954_pilon__uns (894 bp) chr contig_2955_pilon__uns (816 bp) chr contig_2960_pilon__uns (1118 bp) chr contig_2962_pilon__uns (4637 bp) chr contig_2965_pilon__uns (148305 bp) chr contig_2966_pilon__uns (543 bp) chr contig_2967_pilon__uns (5959 bp) chr contig_2968_pilon__uns (3698 bp) chr contig_2969_pilon__uns (920 bp) chr contig_2970_pilon__uns (358 bp) chr contig_2973_pilon__uns (258 bp) chr contig_2976_pilon__uns (3245 bp) chr contig_2978_pilon__uns (644 bp) chr contig_2980_pilon__uns (601 bp) chr contig_2981_pilon__uns (213477 bp) chr contig_2983_pilon__uns (454 bp) chr contig_2984_pilon__uns (766 bp) chr contig_2987_pilon__uns (2463 bp) chr contig_2994_pilon__uns (44412 bp) chr contig_2997_pilon__uns (787 bp) chr contig_2999_pilon__uns (2316 bp) chr contig_3000_pilon__uns (586 bp) chr contig_3001_pilon__uns (100813 bp) chr contig_3002_pilon__uns (749 bp) chr contig_3003_pilon__uns (553 bp) chr contig_3004_pilon__uns (738 bp) chr contig_3009_pilon__uns (29579 bp) chr contig_3010_pilon__uns (521 bp) chr contig_3013_pilon__uns (283 bp) chr contig_3015_pilon__uns (919 bp) chr contig_3017_pilon__uns (4628 bp) chr contig_3019_pilon__uns (23441 bp) chr contig_3020_pilon__uns (1701 bp) chr contig_3022_pilon__uns (924 bp) chr contig_3024_pilon__uns (414 bp) chr contig_3025_pilon__uns (1923 bp) chr contig_3026_pilon__uns (544 bp) chr contig_3027_pilon__uns (1140 bp) chr contig_3028_pilon__uns (570 bp) chr contig_3032_pilon___frag_1__uns (69854 bp) chr contig_3032_pilon___frag_2___debris__uns (5001 bp) chr contig_3036_pilon__uns (1233 bp) chr contig_303_pilon__uns (95309 bp) chr contig_3040_pilon__uns (12459 bp) chr contig_3041_pilon__uns (634 bp) chr contig_3043_pilon__uns (1171 bp) chr contig_3044_pilon__uns (9894 bp) chr contig_3047_pilon__uns (699 bp) chr contig_3055_pilon__uns (885 bp) chr contig_3058_pilon__uns (528 bp) chr contig_3061_pilon__uns (825 bp) chr contig_3064_pilon__uns (3245 bp) chr contig_3068_pilon__uns (1290 bp) chr contig_3070_pilon__uns (4062 bp) chr contig_3072_pilon__uns (1632 bp) chr contig_3073_pilon__uns (789 bp) chr contig_3074_pilon__uns (646 bp) chr contig_3079_pilon__uns (680 bp) chr contig_3086_pilon__uns (9591 bp) chr contig_3087_pilon__uns (856 bp) chr contig_3088_pilon__uns (95412 bp) chr contig_3090_pilon__uns (29503 bp) chr contig_3093_pilon__uns (2620 bp) chr contig_3102_pilon__uns (2517 bp) chr contig_3103_pilon__uns (550 bp) chr contig_3104_pilon__uns (558 bp) chr contig_3106_pilon__uns (549 bp) chr contig_310_pilon__uns (3958 bp) chr contig_3112_pilon__uns (1008 bp) chr contig_3113_pilon__uns (802 bp) chr contig_3120_pilon__uns (234133 bp) chr contig_3126_pilon__uns (3712 bp) chr contig_3127_pilon__uns (11783 bp) chr contig_312_pilon__uns (11570 bp) chr contig_3130_pilon__uns (627 bp) chr contig_3132_pilon__uns (12853 bp) chr contig_3133_pilon__uns (2642 bp) chr contig_3138_pilon__uns (3637 bp) chr contig_3141_pilon__uns (700 bp) chr contig_3142_pilon__uns (1053 bp) chr contig_3144_pilon__uns (1077 bp) chr contig_3146_pilon__uns (514 bp) chr contig_3147_pilon__uns (3536 bp) chr contig_3150_pilon__uns (22745 bp) chr contig_3151_pilon__uns (753 bp) chr contig_3153_pilon__uns (561 bp) chr contig_3155_pilon__uns (565 bp) chr contig_3156_pilon__uns (23398 bp) chr contig_315_pilon__uns (131916 bp) chr contig_3160_pilon__uns (5210 bp) chr contig_3161_pilon__uns (605 bp) chr contig_3163_pilon__uns (544 bp) chr contig_3166_pilon__uns (1335 bp) chr contig_3169_pilon__uns (5058 bp) chr contig_3172_pilon__uns (637 bp) chr contig_3173_pilon__uns (892 bp) chr contig_3177_pilon__uns (589 bp) chr contig_3180_pilon__uns (659 bp) chr contig_3181_pilon__uns (3343 bp) chr contig_3185_pilon__uns (2627 bp) chr contig_3186_pilon__uns (25243 bp) chr contig_3190_pilon__uns (890 bp) chr contig_3192_pilon__uns (1147 bp) chr contig_3194_pilon__uns (2402 bp) chr contig_3197_pilon__uns (18566 bp) chr contig_3199_pilon__uns (4327 bp) chr contig_31_pilon__uns (54961 bp) chr contig_3200_pilon__uns (2159 bp) chr contig_3201_pilon__uns (565 bp) chr contig_3203_pilon__uns (27609 bp) chr contig_3204_pilon__uns (1288 bp) chr contig_3209_pilon__uns (1162 bp) chr contig_320_pilon__uns (3760 bp) chr contig_3211_pilon__uns (12527 bp) chr contig_3212_pilon__uns (4732 bp) chr contig_3213_pilon__uns (632 bp) chr contig_3220_pilon__uns (2847 bp) chr contig_3223_pilon__uns (776 bp) chr contig_3224_pilon__uns (161790 bp) chr contig_3225_pilon__uns (3471 bp) chr contig_3228_pilon__uns (11303 bp) chr contig_3230_pilon__uns (1674 bp) chr contig_3231_pilon__uns (1302 bp) chr contig_3232_pilon__uns (839 bp) chr contig_3233_pilon__uns (1093 bp) chr contig_3235_pilon__uns (1379 bp) chr contig_3236_pilon__uns (623 bp) chr contig_3237_pilon__uns (102454 bp) chr contig_3243_pilon__uns (3470 bp) chr contig_3244_pilon__uns (810 bp) chr contig_3249_pilon__uns (594 bp) chr contig_3251_pilon__uns (974 bp) chr contig_3252_pilon__uns (22315 bp) chr contig_3254_pilon__uns (673 bp) chr contig_3257_pilon__uns (6843 bp) chr contig_3258_pilon__uns (1658 bp) chr contig_3259_pilon__uns (1270 bp) chr contig_3260_pilon__uns (740 bp) chr contig_3261_pilon__uns (577 bp) chr contig_3262_pilon__uns (627 bp) chr contig_3266_pilon__uns (4150 bp) chr contig_3269_pilon__uns (1844 bp) chr contig_327_pilon__uns (298262 bp) chr contig_3284_pilon__uns (1000 bp) chr contig_3285_pilon__uns (547 bp) chr contig_3295_pilon__uns (554 bp) chr contig_3298_pilon__uns (1724 bp) chr contig_32_pilon___frag_1__uns (22116 bp) chr contig_32_pilon___frag_2___debris__uns (3001 bp) chr contig_3301_pilon__uns (31796 bp) chr contig_3302_pilon__uns (1657 bp) chr contig_3305_pilon__uns (772 bp) chr contig_3306_pilon__uns (1805 bp) chr contig_3307_pilon__uns (668 bp) chr contig_3311_pilon__uns (1660 bp) chr contig_3317_pilon__uns (729 bp) chr contig_3318_pilon__uns (2955 bp) chr contig_3319_pilon__uns (646 bp) chr contig_331_pilon__uns (2604 bp) chr contig_3320_pilon__uns (111711 bp) chr contig_3321_pilon__uns (251448 bp) chr contig_3323_pilon__uns (912 bp) chr contig_3326_pilon__uns (1756 bp) chr contig_3327_pilon__uns (1658 bp) chr contig_3331_pilon__uns (3077 bp) chr contig_3339_pilon__uns (2823 bp) chr contig_3342_pilon__uns (2090 bp) chr contig_3343_pilon__uns (18928 bp) chr contig_3344_pilon__uns (902 bp) chr contig_3346_pilon__uns (1421 bp) chr contig_3347_pilon__uns (2314 bp) chr contig_3348_pilon__uns (1352 bp) chr contig_334_pilon__uns (15492 bp) chr contig_3351_pilon__uns (16074 bp) chr contig_3352_pilon__uns (634 bp) chr contig_3353_pilon__uns (1112 bp) chr contig_3354_pilon__uns (3305 bp) chr contig_3355_pilon__uns (4077 bp) chr contig_3358_pilon__uns (876 bp) chr contig_3360_pilon__uns (590 bp) chr contig_3361_pilon__uns (5598 bp) chr contig_3363_pilon__uns (469 bp) chr contig_3367_pilon__uns (1065 bp) chr contig_3368_pilon__uns (62060 bp) chr contig_3369_pilon__uns (1041 bp) chr contig_336_pilon__uns (24230 bp) chr contig_3372_pilon__uns (1148 bp) chr contig_3373_pilon__uns (754 bp) chr contig_3384_pilon__uns (783 bp) chr contig_3389_pilon__uns (4477 bp) chr contig_338_pilon__uns (124246 bp) chr contig_3392_pilon__uns (963 bp) chr contig_3396_pilon__uns (723 bp) chr contig_3399_pilon__uns (1459 bp) chr contig_3400_pilon__uns (570 bp) chr contig_3402_pilon__uns (1591 bp) chr contig_3405_pilon__uns (36874 bp) chr contig_3406_pilon__uns (3141 bp) chr contig_3407_pilon__uns (646 bp) chr contig_3408_pilon__uns (819 bp) chr contig_3410_pilon__uns (3795 bp) chr contig_3412_pilon__uns (1602 bp) chr contig_3415_pilon__uns (614 bp) chr contig_3416_pilon__uns (4992 bp) chr contig_3418_pilon__uns (1250 bp) chr contig_3419_pilon__uns (3300 bp) chr contig_3421_pilon__uns (798 bp) chr contig_3422_pilon__uns (509 bp) chr contig_3424_pilon__uns (5893 bp) chr contig_3427_pilon__uns (1819 bp) chr contig_3430_pilon__uns (670 bp) chr contig_3431_pilon__uns (11459 bp) chr contig_3432_pilon__uns (1950 bp) chr contig_3433_pilon__uns (32025 bp) chr contig_3435_pilon__uns (10888 bp) chr contig_3436_pilon__uns (602 bp) chr contig_3437_pilon__uns (1243 bp) chr contig_3441_pilon__uns (960 bp) chr contig_3442_pilon__uns (587 bp) chr contig_3445_pilon__uns (2891 bp) chr contig_3448_pilon__uns (26440 bp) chr contig_3450_pilon__uns (1015 bp) chr contig_3455_pilon__uns (6592 bp) chr contig_3456_pilon__uns (18185 bp) chr contig_3466_pilon__uns (601 bp) chr contig_3467_pilon__uns (1562 bp) chr contig_3470_pilon__uns (782 bp) chr contig_3474_pilon__uns (610 bp) chr contig_3475_pilon__uns (968 bp) chr contig_3482_pilon__uns (929 bp) chr contig_3484_pilon__uns (512 bp) chr contig_3486_pilon__uns (2161 bp) chr contig_3487_pilon__uns (547 bp) chr contig_3488_pilon__uns (4700 bp) chr contig_3489_pilon__uns (601 bp) chr contig_3494_pilon__uns (2448 bp) chr contig_3495_pilon__uns (10453 bp) chr contig_3496_pilon__uns (4759 bp) chr contig_3497_pilon__uns (10997 bp) chr contig_3501_pilon__uns (893 bp) chr contig_3504_pilon__uns (260 bp) chr contig_3507_pilon__uns (4037 bp) chr contig_3510_pilon__uns (566 bp) chr contig_3514_pilon__uns (1085 bp) chr contig_3521_pilon__uns (33996 bp) chr contig_3524_pilon__uns (213 bp) chr contig_3527_pilon__uns (680 bp) chr contig_3528_pilon__uns (1675 bp) chr contig_352_pilon__uns (11196 bp) chr contig_3531_pilon__uns (4804 bp) chr contig_3533_pilon__uns (2242 bp) chr contig_3538_pilon__uns (939 bp) chr contig_353_pilon__uns (100892 bp) chr contig_3540_pilon__uns (882 bp) chr contig_3541_pilon__uns (1416 bp) chr contig_3544_pilon__uns (794 bp) chr contig_3546_pilon__uns (1288 bp) chr contig_3547_pilon__uns (1487 bp) chr contig_3549_pilon__uns (736 bp) chr contig_3552_pilon__uns (13390 bp) chr contig_3553_pilon__uns (4396 bp) chr contig_3558_pilon__uns (50239 bp) chr contig_355_pilon__uns (40018 bp) chr contig_3560_pilon__uns (718 bp) chr contig_3562_pilon__uns (672 bp) chr contig_3564_pilon__uns (2057 bp) chr contig_3565_pilon__uns (490 bp) chr contig_356_pilon__uns (71027 bp) chr contig_3572_pilon__uns (38558 bp) chr contig_3574_pilon__uns (577 bp) chr contig_3575_pilon__uns (551 bp) chr contig_3576_pilon__uns (312 bp) chr contig_3578_pilon___frag_2___debris__uns (2001 bp) chr contig_3579_pilon__uns (1588 bp) chr contig_3580_pilon__uns (1695 bp) chr contig_3582_pilon__uns (639 bp) chr contig_3584_pilon__uns (1159 bp) chr contig_3585_pilon__uns (4714 bp) chr contig_3590_pilon__uns (4696 bp) chr contig_3591_pilon__uns (539 bp) chr contig_3592_pilon__uns (622 bp) chr contig_3596_pilon__uns (1081 bp) chr contig_3598_pilon__uns (6106 bp) chr contig_3600_pilon__uns (39741 bp) chr contig_3605_pilon__uns (485 bp) chr contig_3606_pilon__uns (880 bp) chr contig_3607_pilon__uns (502 bp) chr contig_3608_pilon__uns (1211 bp) chr contig_360_pilon__uns (5796 bp) chr contig_3610_pilon__uns (1885 bp) chr contig_3611_pilon__uns (4180 bp) chr contig_3612_pilon__uns (615 bp) chr contig_361_pilon__uns (15591 bp) chr contig_3620_pilon__uns (692 bp) chr contig_3624_pilon__uns (1299 bp) chr contig_3625_pilon__uns (21166 bp) chr contig_3628_pilon__uns (40175 bp) chr contig_3629_pilon__uns (519 bp) chr contig_3630_pilon__uns (5219 bp) chr contig_3631_pilon__uns (978 bp) chr contig_3632_pilon__uns (5773 bp) chr contig_3636_pilon__uns (973 bp) chr contig_3637_pilon__uns (1153 bp) chr contig_3638_pilon__uns (567 bp) chr contig_3639_pilon__uns (822 bp) chr contig_363_pilon__uns (56351 bp) chr contig_3640_pilon__uns (43035 bp) chr contig_3641_pilon__uns (1063 bp) chr contig_3643_pilon__uns (15629 bp) chr contig_3644_pilon__uns (31686 bp) chr contig_3648_pilon__uns (584 bp) chr contig_364_pilon__uns (19907 bp) chr contig_3657_pilon__uns (2480 bp) chr contig_3659_pilon__uns (44926 bp) chr contig_3660_pilon__uns (5026 bp) chr contig_3661_pilon__uns (4450 bp) chr contig_3665_pilon__uns (799 bp) chr contig_3667_pilon__uns (2197 bp) chr contig_3669_pilon__uns (686 bp) chr contig_3670_pilon__uns (510 bp) chr contig_3671_pilon__uns (3665 bp) chr contig_3672_pilon__uns (11355 bp) chr contig_3674_pilon__uns (696 bp) chr contig_3677_pilon__uns (1942 bp) chr contig_3678_pilon__uns (1214 bp) chr contig_3679_pilon__uns (13597 bp) chr contig_367_pilon__uns (127737 bp) chr contig_3680_pilon__uns (507 bp) chr contig_3682_pilon__uns (1203 bp) chr contig_3683_pilon__uns (1123 bp) chr contig_3684_pilon__uns (1598 bp) chr contig_3687_pilon__uns (1061 bp) chr contig_3689_pilon__uns (10413 bp) chr contig_3691_pilon__uns (233 bp) chr contig_3694_pilon__uns (983 bp) chr contig_3696_pilon__uns (1514 bp) chr contig_3704_pilon__uns (279 bp) chr contig_3705_pilon__uns (612 bp) chr contig_3707_pilon__uns (315 bp) chr contig_370_pilon__uns (14427 bp) chr contig_3711_pilon__uns (1165 bp) chr contig_3714_pilon__uns (5864 bp) chr contig_3715_pilon__uns (1421 bp) chr contig_3716_pilon__uns (565 bp) chr contig_3719_pilon__uns (1759 bp) chr contig_3720_pilon__uns (1428 bp) chr contig_3723_pilon__uns (22387 bp) chr contig_3724_pilon__uns (73450 bp) chr contig_3725_pilon__uns (492 bp) chr contig_3726_pilon__uns (2384 bp) chr contig_3727_pilon__uns (1029 bp) chr contig_3728_pilon__uns (25413 bp) chr contig_372_pilon__uns (157673 bp) chr contig_3731_pilon__uns (624 bp) chr contig_3732_pilon__uns (57763 bp) chr contig_3733_pilon__uns (1689 bp) chr contig_3734_pilon__uns (2249 bp) chr contig_3735_pilon__uns (1958 bp) chr contig_3736_pilon__uns (4839 bp) chr contig_3737_pilon__uns (858 bp) chr contig_3739_pilon__uns (1386 bp) chr contig_3740_pilon__uns (4942 bp) chr contig_3741_pilon__uns (2920 bp) chr contig_3742_pilon__uns (1745 bp) chr contig_3743_pilon__uns (4763 bp) chr contig_3746_pilon__uns (1629 bp) chr contig_3749_pilon__uns (1045 bp) chr contig_3750_pilon__uns (426 bp) chr contig_3753_pilon__uns (1173 bp) chr contig_3754_pilon__uns (1082 bp) chr contig_3755_pilon__uns (1263 bp) chr contig_3756_pilon__uns (8369 bp) chr contig_3758_pilon__uns (18983 bp) chr contig_3761_pilon__uns (596 bp) chr contig_3763_pilon__uns (2008 bp) chr contig_3764_pilon__uns (12152 bp) chr contig_3765_pilon__uns (42808 bp) chr contig_3766_pilon__uns (2227 bp) chr contig_3770_pilon__uns (2446 bp) chr contig_3772_pilon__uns (23436 bp) chr contig_3773_pilon__uns (1113 bp) chr contig_3774_pilon__uns (402 bp) chr contig_3775_pilon__uns (1196 bp) chr contig_3776_pilon__uns (1415 bp) chr contig_3777_pilon__uns (501 bp) chr contig_3778_pilon__uns (872 bp) chr contig_3779_pilon__uns (78302 bp) chr contig_377_pilon__uns (24607 bp) chr contig_3780_pilon__uns (15953 bp) chr contig_3781_pilon__uns (202064 bp) chr contig_3782_pilon__uns (483 bp) chr contig_3783_pilon__uns (1545 bp) chr contig_3784_pilon__uns (27087 bp) chr contig_3785_pilon__uns (768 bp) chr contig_3789_pilon__uns (5655 bp) chr contig_3790_pilon__uns (654 bp) chr contig_3791_pilon__uns (1361 bp) chr contig_3793_pilon__uns (50121 bp) chr contig_3794_pilon__uns (987 bp) chr contig_3797_pilon__uns (2240 bp) chr contig_3801_pilon__uns (1987 bp) chr contig_3804_pilon__uns (997 bp) chr contig_3805_pilon__uns (2138 bp) chr contig_3806_pilon__uns (2907 bp) chr contig_3809_pilon__uns (813 bp) chr contig_3811_pilon__uns (1099 bp) chr contig_3812_pilon__uns (39563 bp) chr contig_3814_pilon__uns (24788 bp) chr contig_3815_pilon__uns (12615 bp) chr contig_3818_pilon__uns (4198 bp) chr contig_3819_pilon__uns (3391 bp) chr contig_3824_pilon__uns (16996 bp) chr contig_3825_pilon__uns (836 bp) chr contig_3826_pilon__uns (1701 bp) chr contig_3828_pilon__uns (2465 bp) chr contig_3829_pilon__uns (2402 bp) chr contig_382_pilon__uns (89959 bp) chr contig_3830_pilon__uns (3712 bp) chr contig_3832_pilon__uns (104852 bp) chr contig_3834_pilon__uns (27327 bp) chr contig_3835_pilon__uns (1951 bp) chr contig_3837_pilon__uns (7878 bp) chr contig_3838_pilon__uns (2105 bp) chr contig_3841_pilon__uns (1285 bp) chr contig_3843_pilon__uns (1022 bp) chr contig_3844_pilon__uns (254 bp) chr contig_3845_pilon__uns (720 bp) chr contig_3847_pilon__uns (1241 bp) chr contig_3849_pilon__uns (515 bp) chr contig_3853_pilon__uns (1190 bp) chr contig_3855_pilon__uns (554 bp) chr contig_3856_pilon__uns (2030 bp) chr contig_3858_pilon__uns (796 bp) chr contig_3859_pilon__uns (1122 bp) chr contig_385_pilon___frag_2___debris__uns (5001 bp) chr contig_3860_pilon__uns (1342 bp) chr contig_3862_pilon__uns (847 bp) chr contig_3863_pilon__uns (871 bp) chr contig_3864_pilon__uns (1510 bp) chr contig_3866_pilon__uns (1256 bp) chr contig_3867_pilon__uns (842 bp) chr contig_3869_pilon__uns (1036 bp) chr contig_3871_pilon__uns (631 bp) chr contig_3873_pilon__uns (744 bp) chr contig_3876_pilon__uns (988 bp) chr contig_3878_pilon__uns (4230 bp) chr contig_3881_pilon__uns (1270 bp) chr contig_3883_pilon__uns (11381 bp) chr contig_3884_pilon__uns (1557 bp) chr contig_3889_pilon__uns (27275 bp) chr contig_388_pilon___frag_1__uns (237430 bp) chr contig_388_pilon___frag_2___debris__uns (5001 bp) chr contig_388_pilon___frag_3__uns (73001 bp) chr contig_388_pilon___frag_4___debris__uns (5001 bp) chr contig_388_pilon___frag_5__uns (135237 bp) chr contig_3892_pilon__uns (14424 bp) chr contig_3896_pilon__uns (558 bp) chr contig_389_pilon__uns (158705 bp) chr contig_3905_pilon__uns (9989 bp) chr contig_390_pilon__uns (23029 bp) chr contig_3911_pilon__uns (559 bp) chr contig_3912_pilon__uns (11374 bp) chr contig_3929_pilon__uns (1815 bp) chr contig_392_pilon__uns (14492 bp) chr contig_3938_pilon__uns (847 bp) chr contig_3939_pilon__uns (1114 bp) chr contig_3941_pilon__uns (503 bp) chr contig_3947_pilon__uns (579 bp) chr contig_3952_pilon__uns (2214 bp) chr contig_3954_pilon__uns (951 bp) chr contig_3958_pilon__uns (597 bp) chr contig_3959_pilon__uns (759 bp) chr contig_395_pilon__uns (150415 bp) chr contig_3960_pilon__uns (1656 bp) chr contig_3963_pilon__uns (14275 bp) chr contig_3964_pilon__uns (18858 bp) chr contig_3967_pilon__uns (525 bp) chr contig_396_pilon__uns (103814 bp) chr contig_3981_pilon__uns (12804 bp) chr contig_3982_pilon__uns (537 bp) chr contig_3985_pilon__uns (56993 bp) chr contig_3987_pilon__uns (776 bp) chr contig_3989_pilon__uns (8215 bp) chr contig_3996_pilon__uns (195368 bp) chr contig_3997_pilon__uns (216 bp) chr contig_3998_pilon__uns (602 bp) chr contig_39_pilon__uns (10916 bp) chr contig_3_pilon__uns (10510 bp) chr contig_4000_pilon__uns (14147 bp) chr contig_4011_pilon__uns (575 bp) chr contig_4015_pilon__uns (2903 bp) chr contig_401_pilon__uns (11163 bp) chr contig_4034_pilon__uns (1003 bp) chr contig_4036_pilon__uns (836 bp) chr contig_4039_pilon__uns (3506 bp) chr contig_4042_pilon__uns (10314 bp) chr contig_4056_pilon__uns (5933 bp) chr contig_4067_pilon__uns (205694 bp) chr contig_4069_pilon__uns (3935 bp) chr contig_4074_pilon__uns (5660 bp) chr contig_407_pilon__uns (35907 bp) chr contig_4081_pilon__uns (737 bp) chr contig_4082_pilon__uns (928 bp) chr contig_4083_pilon__uns (27688 bp) chr contig_4089_pilon__uns (1739 bp) chr contig_4091_pilon__uns (13450 bp) chr contig_4092_pilon__uns (6766 bp) chr contig_40_pilon__uns (8315 bp) chr contig_4100_pilon__uns (7980 bp) chr contig_4105_pilon__uns (20120 bp) chr contig_4109_pilon__uns (6193 bp) chr contig_4111_pilon__uns (745 bp) chr contig_4115_pilon__uns (4803 bp) chr contig_4118_pilon__uns (6176 bp) chr contig_4120_pilon___frag_2___debris__uns (3001 bp) chr contig_4126_pilon__uns (57632 bp) chr contig_4132_pilon__uns (23163 bp) chr contig_4135_pilon__uns (995 bp) chr contig_4138_pilon__uns (5293 bp) chr contig_4139_pilon__uns (5930 bp) chr contig_4141_pilon__uns (4414 bp) chr contig_4148_pilon__uns (2393 bp) chr contig_414_pilon__uns (226694 bp) chr contig_4152_pilon__uns (2682 bp) chr contig_4157_pilon__uns (84522 bp) chr contig_415_pilon__uns (6660 bp) chr contig_4161_pilon__uns (8311 bp) chr contig_4163_pilon__uns (2194 bp) chr contig_4165_pilon__uns (1743 bp) chr contig_4169_pilon__uns (49944 bp) chr contig_4182_pilon__uns (240319 bp) chr contig_4188_pilon__uns (8617 bp) chr contig_4189_pilon__uns (2558 bp) chr contig_418_pilon__uns (58668 bp) chr contig_4192_pilon__uns (30859 bp) chr contig_4197_pilon__uns (3951 bp) chr contig_4202_pilon__uns (5844 bp) chr contig_4203_pilon__uns (42289 bp) chr contig_420_pilon__uns (24873 bp) chr contig_4212_pilon__uns (292548 bp) chr contig_4213_pilon__uns (5307 bp) chr contig_4217_pilon__uns (16392 bp) chr contig_421_pilon__uns (20849 bp) chr contig_4221_pilon__uns (1478 bp) chr contig_4224_pilon__uns (11763 bp) chr contig_4225_pilon__uns (1985 bp) chr contig_4226_pilon___frag_2___debris__uns (2001 bp) chr contig_4226_pilon___frag_3__uns (33010 bp) chr contig_4227_pilon__uns (34299 bp) chr contig_4229_pilon__uns (10050 bp) chr contig_422_pilon__uns (54879 bp) chr contig_4231_pilon__uns (4099 bp) chr contig_4234_pilon__uns (9652 bp) chr contig_4237_pilon__uns (1877 bp) chr contig_423_pilon__uns (21082 bp) chr contig_4242_pilon__uns (7754 bp) chr contig_4244_pilon__uns (5600 bp) chr contig_4246_pilon__uns (103767 bp) chr contig_424_pilon__uns (26297 bp) chr contig_4256_pilon__uns (27642 bp) chr contig_4257_pilon__uns (90525 bp) chr contig_4261_pilon__uns (14421 bp) chr contig_4263_pilon__uns (4250 bp) chr contig_4267_pilon__uns (168836 bp) chr contig_4268_pilon__uns (98293 bp) chr contig_4270_pilon__uns (18954 bp) chr contig_4271_pilon__uns (1919 bp) chr contig_4272_pilon__uns (2978 bp) chr contig_4274_pilon__uns (207802 bp) chr contig_4280_pilon__uns (551 bp) chr contig_4281_pilon__uns (63691 bp) chr contig_4285_pilon__uns (23448 bp) chr contig_4287_pilon__uns (98631 bp) chr contig_4291_pilon__uns (23961 bp) chr contig_4294_pilon__uns (16223 bp) chr contig_4295_pilon__uns (3452 bp) chr contig_4297_pilon__uns (23543 bp) chr contig_429_pilon__uns (44290 bp) chr contig_4301_pilon__uns (5525 bp) chr contig_4307_pilon__uns (12749 bp) chr contig_4314_pilon__uns (481 bp) chr contig_4319_pilon__uns (15845 bp) chr contig_4324_pilon__uns (2330 bp) chr contig_4326_pilon__uns (14382 bp) chr contig_4328_pilon__uns (91484 bp) chr contig_4335_pilon__uns (154880 bp) chr contig_4336_pilon__uns (61379 bp) chr contig_4340_pilon__uns (4014 bp) chr contig_4342_pilon__uns (3439 bp) chr contig_4345_pilon__uns (35975 bp) chr contig_4347_pilon__uns (2311 bp) chr contig_4350_pilon__uns (7199 bp) chr contig_4353_pilon__uns (19416 bp) chr contig_4356_pilon__uns (35233 bp) chr contig_435_pilon__uns (24397 bp) chr contig_4377_pilon__uns (624 bp) chr contig_4378_pilon__uns (98197 bp) chr contig_437_pilon__uns (11035 bp) chr contig_4380_pilon__uns (28949 bp) chr contig_4389_pilon__uns (115908 bp) chr contig_4391_pilon__uns (4832 bp) chr contig_4392_pilon___frag_1__uns (55376 bp) chr contig_4392_pilon___frag_2___debris__uns (5001 bp) chr contig_4392_pilon___frag_3__uns (32250 bp) chr contig_4394_pilon__uns (55173 bp) chr contig_4397_pilon__uns (1083 bp) chr contig_4401_pilon___frag_1__uns (128389 bp) chr contig_4401_pilon___frag_2___debris__uns (1001 bp) chr contig_4401_pilon___frag_3__uns (18001 bp) chr contig_4401_pilon___frag_4___debris__uns (1001 bp) chr contig_4401_pilon___frag_5__uns (104394 bp) chr contig_4404_pilon__uns (2633 bp) chr contig_4406_pilon__uns (79444 bp) chr contig_4408_pilon__uns (829 bp) chr contig_440_pilon__uns (166917 bp) chr contig_4412_pilon__uns (25487 bp) chr contig_4413_pilon__uns (58953 bp) chr contig_4416_pilon__uns (14793 bp) chr contig_4424_pilon___frag_2___debris__uns (5001 bp) chr contig_4426_pilon__uns (3302 bp) chr contig_4427_pilon__uns (52525 bp) chr contig_442_pilon__uns (37193 bp) chr contig_4435_pilon__uns (42965 bp) chr contig_4441_pilon__uns (136249 bp) chr contig_444_pilon___frag_1__uns (21570 bp) chr contig_444_pilon___frag_10___debris__uns (1001 bp) chr contig_444_pilon___frag_11__uns (102466 bp) chr contig_444_pilon___frag_2___debris__uns (1001 bp) chr contig_444_pilon___frag_3__uns (21001 bp) chr contig_444_pilon___frag_4___debris__uns (1001 bp) chr contig_444_pilon___frag_5__uns (22001 bp) chr contig_444_pilon___frag_6___debris__uns (1001 bp) chr contig_444_pilon___frag_7__uns (36001 bp) chr contig_444_pilon___frag_8___debris__uns (1001 bp) chr contig_444_pilon___frag_9___frag_1__uns (22995 bp) chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp) chr contig_444_pilon___frag_9___frag_3__uns (47150 bp) chr contig_4451_pilon__uns (20514 bp) chr contig_4456_pilon__uns (744 bp) chr contig_4460_pilon__uns (256227 bp) chr contig_4464_pilon__uns (53285 bp) chr contig_4466_pilon__uns (59881 bp) chr contig_4468_pilon__uns (219392 bp) chr contig_4469_pilon__uns (2751 bp) chr contig_446_pilon__uns (15341 bp) chr contig_4471_pilon__uns (16199 bp) chr contig_4472_pilon__uns (4344 bp) chr contig_4480_pilon__uns (62477 bp) chr contig_4494_pilon__uns (483 bp) chr contig_4496_pilon__uns (512 bp) chr contig_4506_pilon__uns (144629 bp) chr contig_4510_pilon__uns (814 bp) chr contig_4517_pilon__uns (199088 bp) chr contig_4519_pilon__uns (160735 bp) chr contig_4520_pilon___frag_2___debris__uns (5001 bp) chr contig_4524_pilon__uns (650 bp) chr contig_4530_pilon__uns (87169 bp) chr contig_4535_pilon__uns (494 bp) chr contig_4539_pilon__uns (28181 bp) chr contig_453_pilon__uns (1482 bp) chr contig_4540_pilon__uns (94444 bp) chr contig_4554_pilon__uns (1276 bp) chr contig_456_pilon___frag_2___debris__uns (5001 bp) chr contig_4570_pilon__uns (117653 bp) chr contig_4571_pilon__uns (1359 bp) chr contig_4583_pilon__uns (12161 bp) chr contig_4586_pilon__uns (13415 bp) chr contig_4588_pilon___frag_2___debris__uns (5001 bp) chr contig_4602_pilon__uns (24373 bp) chr contig_4610_pilon__uns (1569 bp) chr contig_4618_pilon__uns (163587 bp) chr contig_4619_pilon__uns (2103 bp) chr contig_4623_pilon__uns (57322 bp) chr contig_4634_pilon__uns (2321 bp) chr contig_4636_pilon__uns (1989 bp) chr contig_4641_pilon__uns (2303 bp) chr contig_4643_pilon__uns (22046 bp) chr contig_4644_pilon__uns (844 bp) chr contig_4647_pilon__uns (5675 bp) chr contig_464_pilon__uns (123656 bp) chr contig_4663_pilon__uns (119416 bp) chr contig_4664_pilon__uns (45920 bp) chr contig_4667_pilon__uns (82309 bp) chr contig_4672_pilon__uns (172258 bp) chr contig_4678_pilon__uns (51903 bp) chr contig_4680_pilon___frag_1__uns (24015 bp) chr contig_4680_pilon___frag_2___debris__uns (2001 bp) chr contig_4680_pilon___frag_3__uns (32945 bp) chr contig_4680_pilon___frag_4___debris__uns (5001 bp) chr contig_4693_pilon__uns (6416 bp) chr contig_4707_pilon__uns (70546 bp) chr contig_4709_pilon__uns (33590 bp) chr contig_4718_pilon__uns (1654 bp) chr contig_4727_pilon__uns (6347 bp) chr contig_4728_pilon___frag_1__uns (101617 bp) chr contig_4728_pilon___frag_2___debris__uns (5001 bp) chr contig_4731_pilon__uns (10152 bp) chr contig_4733_pilon__uns (138293 bp) chr contig_4741_pilon__uns (30675 bp) chr contig_4742_pilon__uns (827 bp) chr contig_4752_pilon__uns (693 bp) chr contig_4757_pilon__uns (89581 bp) chr contig_4763_pilon__uns (119212 bp) chr contig_4765_pilon__uns (662 bp) chr contig_476_pilon__uns (79115 bp) chr contig_4771_pilon__uns (144614 bp) chr contig_4773_pilon__uns (4885 bp) chr contig_4774_pilon__uns (515 bp) chr contig_4779_pilon__uns (28812 bp) chr contig_477_pilon__uns (39187 bp) chr contig_4802_pilon__uns (32128 bp) chr contig_4803_pilon__uns (66147 bp) chr contig_4805_pilon__uns (628 bp) chr contig_4809_pilon__uns (7202 bp) chr contig_480_pilon__uns (5031 bp) chr contig_4811_pilon__uns (2905 bp) chr contig_4812_pilon__uns (3429 bp) chr contig_4814_pilon__uns (6209 bp) chr contig_4820_pilon__uns (6829 bp) chr contig_4821_pilon__uns (18367 bp) chr contig_4829_pilon__uns (947 bp) chr contig_482_pilon__uns (179811 bp) chr contig_4830_pilon__uns (3240 bp) chr contig_4834_pilon__uns (31766 bp) chr contig_4843_pilon__uns (376489 bp) chr contig_4854_pilon__uns (62177 bp) chr contig_4859_pilon__uns (28092 bp) chr contig_485_pilon__uns (71298 bp) chr contig_486_pilon__uns (80004 bp) chr contig_4873_pilon__uns (544 bp) chr contig_4877_pilon__uns (24718 bp) chr contig_4888_pilon__uns (3609 bp) chr contig_4894_pilon__uns (2076 bp) chr contig_489_pilon__uns (22784 bp) chr contig_4904_pilon__uns (4038 bp) chr contig_4905_pilon__uns (586 bp) chr contig_4909_pilon__uns (839 bp) chr contig_4915_pilon__uns (5315 bp) chr contig_4919_pilon__uns (3801 bp) chr contig_4927_pilon__uns (2369 bp) chr contig_4929_pilon__uns (835 bp) chr contig_4936_pilon__uns (52193 bp) chr contig_4938_pilon__uns (192080 bp) chr contig_4941_pilon__uns (4642 bp) chr contig_4942_pilon__uns (112700 bp) chr contig_4944_pilon__uns (23664 bp) chr contig_4947_pilon__uns (24962 bp) chr contig_4950_pilon__uns (60704 bp) chr contig_4953_pilon__uns (564 bp) chr contig_4955_pilon__uns (93394 bp) chr contig_4965_pilon__uns (10423 bp) chr contig_4966_pilon__uns (56459 bp) chr contig_4968_pilon___frag_2___debris__uns (3001 bp) chr contig_4970_pilon__uns (22686 bp) chr contig_4972_pilon__uns (1638 bp) chr contig_497_pilon__uns (42043 bp) chr contig_4996_pilon__uns (5519 bp) chr contig_4999_pilon__uns (4188 bp) chr contig_499_pilon__uns (5025 bp) chr contig_49_pilon__uns (46608 bp) chr contig_5002_pilon__uns (94934 bp) chr contig_5003_pilon__uns (5721 bp) chr contig_5007_pilon__uns (790 bp) chr contig_5014_pilon__uns (83131 bp) chr contig_5015_pilon__uns (76564 bp) chr contig_5018_pilon__uns (809 bp) chr contig_5019_pilon__uns (4071 bp) chr contig_5025_pilon__uns (59756 bp) chr contig_5029_pilon__uns (11500 bp) chr contig_5034_pilon__uns (4351 bp) chr contig_5036_pilon__uns (4807 bp) chr contig_5042_pilon__uns (244490 bp) chr contig_5043_pilon__uns (716 bp) chr contig_5049_pilon__uns (731 bp) chr contig_5053_pilon__uns (12664 bp) chr contig_5058_pilon__uns (583 bp) chr contig_5059_pilon__uns (23397 bp) chr contig_505_pilon__uns (1654 bp) chr contig_5065_pilon__uns (31098 bp) chr contig_5066_pilon__uns (94498 bp) chr contig_5070_pilon__uns (122384 bp) chr contig_5071_pilon__uns (1139 bp) chr contig_5074_pilon__uns (2759 bp) chr contig_5081_pilon__uns (24613 bp) chr contig_5082_pilon__uns (6804 bp) chr contig_5084_pilon__uns (1484 bp) chr contig_5090_pilon__uns (64536 bp) chr contig_5093_pilon__uns (1642 bp) chr contig_5099_pilon__uns (88863 bp) chr contig_50_pilon__uns (180563 bp) chr contig_5107_pilon__uns (3615 bp) chr contig_5112_pilon__uns (33674 bp) chr contig_5118_pilon__uns (585 bp) chr contig_5119_pilon__uns (3834 bp) chr contig_511_pilon__uns (4140 bp) chr contig_5123_pilon___frag_1__uns (196648 bp) chr contig_5123_pilon___frag_2___debris__uns (2001 bp) chr contig_5126_pilon__uns (31139 bp) chr contig_5127_pilon__uns (122358 bp) chr contig_5132_pilon__uns (894 bp) chr contig_5135_pilon___frag_2___debris__uns (1001 bp) chr contig_5135_pilon___frag_3__uns (242641 bp) chr contig_5138_pilon__uns (5606 bp) chr contig_5144_pilon__uns (580 bp) chr contig_5149_pilon__uns (21050 bp) chr contig_514_pilon__uns (67786 bp) chr contig_5160_pilon__uns (117768 bp) chr contig_5162_pilon__uns (3104 bp) chr contig_5175_pilon__uns (44872 bp) chr contig_5176_pilon__uns (550 bp) chr contig_5178_pilon__uns (51620 bp) chr contig_5183_pilon__uns (11102 bp) chr contig_5190_pilon__uns (257161 bp) chr contig_5193_pilon__uns (616 bp) chr contig_5195_pilon__uns (4133 bp) chr contig_5198_pilon__uns (6755 bp) chr contig_5211_pilon__uns (121424 bp) chr contig_5213_pilon___frag_2___debris__uns (5001 bp) chr contig_5223_pilon__uns (1984 bp) chr contig_5226_pilon__uns (150949 bp) chr contig_522_pilon__uns (5974 bp) chr contig_5235_pilon__uns (1723 bp) chr contig_5236_pilon__uns (49028 bp) chr contig_5237_pilon__uns (321 bp) chr contig_523_pilon___frag_1__uns (26878 bp) chr contig_523_pilon___frag_2___debris__uns (5001 bp) chr contig_523_pilon___frag_3__uns (53134 bp) chr contig_5244_pilon__uns (762 bp) chr contig_5246_pilon__uns (72901 bp) chr contig_5250_pilon__uns (6668 bp) chr contig_5253_pilon__uns (559 bp) chr contig_5257_pilon__uns (1798 bp) chr contig_5258_pilon__uns (38282 bp) chr contig_5259_pilon__uns (895 bp) chr contig_5262_pilon__uns (6119 bp) chr contig_5266_pilon__uns (1321 bp) chr contig_5272_pilon__uns (3336 bp) chr contig_5274_pilon__uns (593 bp) chr contig_5276_pilon__uns (54555 bp) chr contig_5286_pilon__uns (99766 bp) chr contig_5295_pilon__uns (129209 bp) chr contig_5299_pilon__uns (147086 bp) chr contig_5306_pilon__uns (681 bp) chr contig_533_pilon___frag_2___debris__uns (5001 bp) chr contig_5343_pilon__uns (1378 bp) chr contig_5345_pilon__uns (6258 bp) chr contig_5354_pilon__uns (18613 bp) chr contig_5357_pilon___frag_1__uns (101300 bp) chr contig_5357_pilon___frag_2___debris__uns (3001 bp) chr contig_535_pilon__uns (7848 bp) chr contig_5363_pilon__uns (77528 bp) chr contig_5366_pilon__uns (2543 bp) chr contig_5373_pilon__uns (39485 bp) chr contig_5379_pilon__uns (305079 bp) chr contig_5388_pilon__uns (39926 bp) chr contig_5394_pilon__uns (1669 bp) chr contig_5397_pilon__uns (5122 bp) chr contig_5398_pilon__uns (81776 bp) chr contig_539_pilon__uns (46889 bp) chr contig_5408_pilon__uns (11438 bp) chr contig_5409_pilon__uns (887 bp) chr contig_540_pilon__uns (82795 bp) chr contig_5411_pilon__uns (324 bp) chr contig_5412_pilon__uns (549 bp) chr contig_5414_pilon__uns (76913 bp) chr contig_5415_pilon__uns (109233 bp) chr contig_5427_pilon__uns (4598 bp) chr contig_5431_pilon__uns (4967 bp) chr contig_5434_pilon__uns (114223 bp) chr contig_5436_pilon__uns (21747 bp) chr contig_5437_pilon__uns (33222 bp) chr contig_543_pilon__uns (52447 bp) chr contig_5443_pilon__uns (3650 bp) chr contig_5444_pilon__uns (34386 bp) chr contig_5446_pilon__uns (43204 bp) chr contig_5451_pilon__uns (4049 bp) chr contig_5456_pilon__uns (596 bp) chr contig_5458_pilon__uns (12020 bp) chr contig_5479_pilon__uns (116642 bp) chr contig_547_pilon__uns (118856 bp) chr contig_548_pilon__uns (17798 bp) chr contig_5493_pilon__uns (2548 bp) chr contig_5499_pilon__uns (27751 bp) chr contig_54_pilon__uns (49657 bp) chr contig_5504_pilon__uns (1695 bp) chr contig_5522_pilon__uns (65556 bp) chr contig_5526_pilon__uns (71090 bp) chr contig_5532_pilon__uns (34374 bp) chr contig_5533_pilon__uns (3133 bp) chr contig_5537_pilon__uns (611 bp) chr contig_5540_pilon__uns (4720 bp) chr contig_5562_pilon__uns (5452 bp) chr contig_5564_pilon__uns (702 bp) chr contig_5565_pilon__uns (174561 bp) chr contig_5571_pilon__uns (106782 bp) chr contig_5583_pilon__uns (3138 bp) chr contig_5586_pilon__uns (476 bp) chr contig_5587_pilon__uns (104032 bp) chr contig_5589_pilon__uns (24769 bp) chr contig_5590_pilon__uns (16952 bp) chr contig_5593_pilon__uns (6210 bp) chr contig_5594_pilon__uns (22206 bp) chr contig_5596_pilon__uns (107825 bp) chr contig_5603_pilon__uns (951 bp) chr contig_5606_pilon__uns (938 bp) chr contig_5609_pilon__uns (45291 bp) chr contig_5620_pilon__uns (10437 bp) chr contig_5623_pilon__uns (61354 bp) chr contig_5630_pilon__uns (27357 bp) chr contig_5631_pilon__uns (2496 bp) chr contig_5634_pilon__uns (56971 bp) chr contig_5637_pilon__uns (126125 bp) chr contig_5641_pilon__uns (750 bp) chr contig_5645_pilon__uns (2010 bp) chr contig_5647_pilon__uns (52228 bp) chr contig_5649_pilon__uns (5086 bp) chr contig_564_pilon__uns (18162 bp) chr contig_5652_pilon__uns (3617 bp) chr contig_5653_pilon__uns (693 bp) chr contig_5656_pilon__uns (9043 bp) chr contig_5657_pilon__uns (92710 bp) chr contig_5658_pilon__uns (1132 bp) chr contig_5669_pilon__uns (222 bp) chr contig_5676_pilon__uns (7689 bp) chr contig_5678_pilon__uns (6422 bp) chr contig_5679_pilon__uns (50216 bp) chr contig_567_pilon__uns (1351 bp) chr contig_5681_pilon__uns (4961 bp) chr contig_5688_pilon__uns (58831 bp) chr contig_5689_pilon__uns (11544 bp) chr contig_5693_pilon__uns (468 bp) chr contig_5696_pilon__uns (51080 bp) chr contig_5706_pilon__uns (618 bp) chr contig_5708_pilon__uns (32621 bp) chr contig_5713_pilon__uns (223466 bp) chr contig_5714_pilon__uns (76167 bp) chr contig_5715_pilon__uns (105358 bp) chr contig_5717_pilon__uns (38050 bp) chr contig_5718_pilon__uns (29234 bp) chr contig_5719_pilon__uns (2335 bp) chr contig_5729_pilon__uns (5345 bp) chr contig_572_pilon__uns (24910 bp) chr contig_5736_pilon__uns (77140 bp) chr contig_5742_pilon__uns (4619 bp) chr contig_5746_pilon__uns (102177 bp) chr contig_5748_pilon__uns (204842 bp) chr contig_574_pilon__uns (10892 bp) chr contig_5751_pilon__uns (14154 bp) chr contig_5752_pilon__uns (3408 bp) chr contig_5756_pilon__uns (517 bp) chr contig_5758_pilon__uns (75221 bp) chr contig_5765_pilon__uns (116927 bp) chr contig_5768_pilon__uns (11798 bp) chr contig_5773_pilon__uns (3444 bp) chr contig_5775_pilon__uns (5339 bp) chr contig_5777_pilon__uns (2556 bp) chr contig_5778_pilon__uns (1032 bp) chr contig_5782_pilon__uns (14978 bp) chr contig_5784_pilon__uns (53594 bp) chr contig_5791_pilon__uns (1299 bp) chr contig_5792_pilon__uns (664 bp) chr contig_5793_pilon__uns (15568 bp) chr contig_5794_pilon__uns (1686 bp) chr contig_5796_pilon__uns (66966 bp) chr contig_5799_pilon__uns (25744 bp) chr contig_579_pilon__uns (5005 bp) chr contig_5800_pilon__uns (13249 bp) chr contig_5801_pilon__uns (9384 bp) chr contig_5802_pilon__uns (122422 bp) chr contig_5803_pilon__uns (23610 bp) chr contig_580_pilon__uns (847 bp) chr contig_5812_pilon__uns (527 bp) chr contig_5813_pilon__uns (3327 bp) chr contig_5818_pilon__uns (15565 bp) chr contig_5819_pilon__uns (1082 bp) chr contig_581_pilon__uns (2643 bp) chr contig_5824_pilon___frag_1__uns (43313 bp) chr contig_5824_pilon___frag_2___debris__uns (3001 bp) chr contig_5824_pilon___frag_3__uns (18760 bp) chr contig_5825_pilon__uns (4282 bp) chr contig_5828_pilon__uns (112721 bp) chr contig_5829_pilon__uns (100643 bp) chr contig_5831_pilon__uns (2144 bp) chr contig_5833_pilon__uns (99663 bp) chr contig_5834_pilon__uns (2355 bp) chr contig_5835_pilon__uns (429 bp) chr contig_5844_pilon__uns (45950 bp) chr contig_5845_pilon__uns (46947 bp) chr contig_5846_pilon__uns (70873 bp) chr contig_5848_pilon__uns (8228 bp) chr contig_5849_pilon__uns (57519 bp) chr contig_5851_pilon__uns (7026 bp) chr contig_5854_pilon__uns (78203 bp) chr contig_5856_pilon__uns (565 bp) chr contig_5858_pilon__uns (825 bp) chr contig_585_pilon__uns (106065 bp) chr contig_5861_pilon__uns (3076 bp) chr contig_5865_pilon__uns (767 bp) chr contig_5867_pilon__uns (1843 bp) chr contig_5873_pilon__uns (93917 bp) chr contig_5877_pilon__uns (3886 bp) chr contig_5878_pilon__uns (902 bp) chr contig_5883_pilon__uns (4709 bp) chr contig_5885_pilon__uns (1502 bp) chr contig_5886_pilon__uns (724 bp) chr contig_5889_pilon__uns (7760 bp) chr contig_5890_pilon__uns (745 bp) chr contig_5892_pilon__uns (107109 bp) chr contig_5894_pilon__uns (40245 bp) chr contig_5896_pilon__uns (109296 bp) chr contig_5897_pilon__uns (3209 bp) chr contig_5899_pilon__uns (604 bp) chr contig_58_pilon__uns (45492 bp) chr contig_5900_pilon__uns (1907 bp) chr contig_5904_pilon__uns (20115 bp) chr contig_5906_pilon__uns (4044 bp) chr contig_590_pilon__uns (37829 bp) chr contig_5911_pilon__uns (431 bp) chr contig_5914_pilon__uns (1822 bp) chr contig_5916_pilon__uns (67259 bp) chr contig_5918_pilon__uns (67361 bp) chr contig_5919_pilon__uns (5308 bp) chr contig_591_pilon___frag_2___debris__uns (5001 bp) chr contig_5923_pilon__uns (6701 bp) chr contig_5924_pilon__uns (133566 bp) chr contig_5926_pilon__uns (2546 bp) chr contig_5928_pilon__uns (3105 bp) chr contig_592_pilon__uns (52641 bp) chr contig_5931_pilon___frag_2___debris__uns (2001 bp) chr contig_5932_pilon__uns (46758 bp) chr contig_5937_pilon__uns (151053 bp) chr contig_5940_pilon__uns (252515 bp) chr contig_5942_pilon__uns (2231 bp) chr contig_5947_pilon__uns (2356 bp) chr contig_5948_pilon__uns (918 bp) chr contig_5958_pilon__uns (1323 bp) chr contig_5964_pilon__uns (30040 bp) chr contig_5967_pilon__uns (1125 bp) chr contig_596_pilon__uns (3064 bp) chr contig_5971_pilon__uns (275285 bp) chr contig_5974_pilon__uns (238 bp) chr contig_5975_pilon__uns (918 bp) chr contig_5977_pilon__uns (20272 bp) chr contig_5981_pilon__uns (955 bp) chr contig_5_pilon__uns (2133 bp) chr contig_6001_pilon__uns (2641 bp) chr contig_6003_pilon__uns (2318 bp) chr contig_6004_pilon__uns (217 bp) chr contig_600_pilon___frag_2___debris__uns (5001 bp) chr contig_6024_pilon__uns (5125 bp) chr contig_6029_pilon__uns (4022 bp) chr contig_6030_pilon__uns (5323 bp) chr contig_6031_pilon__uns (9984 bp) chr contig_6034_pilon__uns (432 bp) chr contig_6036_pilon__uns (2295 bp) chr contig_6038_pilon__uns (2729 bp) chr contig_6040_pilon__uns (68854 bp) chr contig_6042_pilon__uns (4312 bp) chr contig_6047_pilon__uns (6631 bp) chr contig_6048_pilon__uns (578 bp) chr contig_6049_pilon__uns (1470 bp) chr contig_6051_pilon__uns (1609 bp) chr contig_6053_pilon__uns (14756 bp) chr contig_6054_pilon__uns (1533 bp) chr contig_6055_pilon__uns (7254 bp) chr contig_6059_pilon__uns (1219 bp) chr contig_6062_pilon__uns (2775 bp) chr contig_6063_pilon__uns (43583 bp) chr contig_6064_pilon__uns (40366 bp) chr contig_6068_pilon__uns (517 bp) chr contig_6069_pilon__uns (470 bp) chr contig_6071_pilon__uns (2257 bp) chr contig_6074_pilon__uns (1786 bp) chr contig_6075_pilon__uns (3817 bp) chr contig_6076_pilon__uns (14788 bp) chr contig_6078_pilon__uns (913 bp) chr contig_6079_pilon__uns (1205 bp) chr contig_607_pilon___frag_1__uns (155950 bp) chr contig_607_pilon___frag_2___debris__uns (5001 bp) chr contig_6085_pilon__uns (1158 bp) chr contig_6087_pilon__uns (17170 bp) chr contig_6088_pilon__uns (1000 bp) chr contig_6092_pilon__uns (40104 bp) chr contig_6095_pilon__uns (1809 bp) chr contig_6096_pilon__uns (5305 bp) chr contig_6099_pilon__uns (1388 bp) chr contig_6101_pilon__uns (7217 bp) chr contig_6108_pilon__uns (1057 bp) chr contig_6109_pilon__uns (706 bp) chr contig_6110_pilon__uns (643 bp) chr contig_6115_pilon__uns (1952 bp) chr contig_6117_pilon__uns (517 bp) chr contig_6119_pilon__uns (498 bp) chr contig_611_pilon__uns (134846 bp) chr contig_6121_pilon__uns (61081 bp) chr contig_6128_pilon__uns (4289 bp) chr contig_6131_pilon__uns (4347 bp) chr contig_6135_pilon__uns (4955 bp) chr contig_6136_pilon__uns (110244 bp) chr contig_6137_pilon__uns (5640 bp) chr contig_6139_pilon__uns (4078 bp) chr contig_613_pilon__uns (648 bp) chr contig_6143_pilon__uns (8803 bp) chr contig_6146_pilon__uns (7251 bp) chr contig_6147_pilon__uns (1185 bp) chr contig_614_pilon__uns (2722 bp) chr contig_6151_pilon__uns (33636 bp) chr contig_6154_pilon__uns (15186 bp) chr contig_6156_pilon__uns (549 bp) chr contig_6157_pilon__uns (8382 bp) chr contig_6162_pilon__uns (1437 bp) chr contig_6163_pilon__uns (28520 bp) chr contig_6164_pilon__uns (5212 bp) chr contig_6165_pilon__uns (463 bp) chr contig_6167_pilon__uns (2000 bp) chr contig_6168_pilon__uns (2966 bp) chr contig_6175_pilon__uns (70660 bp) chr contig_618_pilon__uns (4725 bp) chr contig_6190_pilon__uns (991 bp) chr contig_6194_pilon__uns (707 bp) chr contig_6195_pilon__uns (2517 bp) chr contig_6197_pilon__uns (2789 bp) chr contig_61_pilon__uns (46704 bp) chr contig_6202_pilon__uns (580 bp) chr contig_6206_pilon__uns (4531 bp) chr contig_620_pilon___frag_2___debris__uns (5001 bp) chr contig_6210_pilon__uns (2238 bp) chr contig_6212_pilon__uns (2198 bp) chr contig_6219_pilon__uns (4189 bp) chr contig_6224_pilon__uns (7617 bp) chr contig_6232_pilon__uns (312 bp) chr contig_623_pilon__uns (14271 bp) chr contig_6240_pilon__uns (1795 bp) chr contig_6242_pilon__uns (1715 bp) chr contig_6251_pilon__uns (566 bp) chr contig_6255_pilon__uns (2237 bp) chr contig_6256_pilon__uns (1152 bp) chr contig_6257_pilon__uns (224 bp) chr contig_6258_pilon__uns (49002 bp) chr contig_6259_pilon__uns (489 bp) chr contig_6260_pilon__uns (2452 bp) chr contig_6267_pilon__uns (91820 bp) chr contig_6269_pilon__uns (26328 bp) chr contig_626_pilon__uns (27333 bp) chr contig_6270_pilon__uns (1890 bp) chr contig_6272_pilon__uns (1326 bp) chr contig_6273_pilon__uns (1483 bp) chr contig_627_pilon__uns (3452 bp) chr contig_6282_pilon__uns (1896 bp) chr contig_6284_pilon__uns (14920 bp) chr contig_6289_pilon__uns (3010 bp) chr contig_6291_pilon__uns (1488 bp) chr contig_6293_pilon__uns (2602 bp) chr contig_6297_pilon__uns (68764 bp) chr contig_6298_pilon__uns (1593 bp) chr contig_62_pilon__uns (54625 bp) chr contig_6303_pilon__uns (4039 bp) chr contig_6313_pilon__uns (49212 bp) chr contig_6314_pilon__uns (68895 bp) chr contig_6322_pilon__uns (634 bp) chr contig_6323_pilon__uns (7866 bp) chr contig_6327_pilon__uns (530 bp) chr contig_6334_pilon__uns (41473 bp) chr contig_6336_pilon__uns (1775 bp) chr contig_6338_pilon__uns (1486 bp) chr contig_633_pilon__uns (330664 bp) chr contig_6340_pilon__uns (15845 bp) chr contig_6347_pilon__uns (19473 bp) chr contig_6353_pilon__uns (552 bp) chr contig_6356_pilon__uns (487 bp) chr contig_6362_pilon__uns (1313 bp) chr contig_6363_pilon__uns (161540 bp) chr contig_6364_pilon__uns (11937 bp) chr contig_6365_pilon__uns (39400 bp) chr contig_6368_pilon__uns (3279 bp) chr contig_6369_pilon__uns (1930 bp) chr contig_6371_pilon__uns (955 bp) chr contig_6375_pilon__uns (1356 bp) chr contig_6377_pilon__uns (780 bp) chr contig_6385_pilon__uns (1387 bp) chr contig_6388_pilon__uns (598 bp) chr contig_6393_pilon__uns (1959 bp) chr contig_6402_pilon__uns (1570 bp) chr contig_6404_pilon__uns (31797 bp) chr contig_6405_pilon__uns (3046 bp) chr contig_6407_pilon__uns (44017 bp) chr contig_6408_pilon__uns (40485 bp) chr contig_6410_pilon__uns (773 bp) chr contig_6411_pilon__uns (3284 bp) chr contig_6413_pilon__uns (4992 bp) chr contig_6420_pilon__uns (1093 bp) chr contig_6425_pilon__uns (7313 bp) chr contig_6427_pilon__uns (17357 bp) chr contig_642_pilon__uns (96367 bp) chr contig_6430_pilon__uns (82598 bp) chr contig_6432_pilon__uns (1137 bp) chr contig_6434_pilon__uns (3863 bp) chr contig_6436_pilon__uns (2214 bp) chr contig_643_pilon__uns (42254 bp) chr contig_6440_pilon__uns (527 bp) chr contig_6444_pilon__uns (25884 bp) chr contig_6445_pilon__uns (19577 bp) chr contig_6447_pilon__uns (609 bp) chr contig_6449_pilon__uns (1007 bp) chr contig_644_pilon__uns (45218 bp) chr contig_6451_pilon__uns (4813 bp) chr contig_6452_pilon__uns (4692 bp) chr contig_6459_pilon__uns (1776 bp) chr contig_6461_pilon__uns (4682 bp) chr contig_6462_pilon__uns (8184 bp) chr contig_6469_pilon__uns (1299 bp) chr contig_6470_pilon__uns (1132 bp) chr contig_6471_pilon__uns (891 bp) chr contig_6477_pilon__uns (1681 bp) chr contig_6479_pilon__uns (4937 bp) chr contig_6480_pilon__uns (916 bp) chr contig_6494_pilon__uns (1145 bp) chr contig_6496_pilon__uns (1937 bp) chr contig_6498_pilon__uns (3267 bp) chr contig_64_pilon___frag_2___debris__uns (5001 bp) chr contig_64_pilon___frag_3__uns (48597 bp) chr contig_6501_pilon__uns (1635 bp) chr contig_6503_pilon__uns (2410 bp) chr contig_6505_pilon__uns (1373 bp) chr contig_6514_pilon__uns (1593 bp) chr contig_6515_pilon__uns (1146 bp) chr contig_6518_pilon__uns (39163 bp) chr contig_6529_pilon__uns (8513 bp) chr contig_652_pilon__uns (22131 bp) chr contig_6536_pilon__uns (21283 bp) chr contig_6537_pilon__uns (513 bp) chr contig_6540_pilon__uns (2209 bp) chr contig_6541_pilon__uns (100062 bp) chr contig_6544_pilon__uns (1126 bp) chr contig_6547_pilon__uns (685 bp) chr contig_6549_pilon__uns (2118 bp) chr contig_6551_pilon__uns (134887 bp) chr contig_655_pilon__uns (779 bp) chr contig_6562_pilon__uns (139326 bp) chr contig_6565_pilon__uns (881 bp) chr contig_6568_pilon__uns (5316 bp) chr contig_656_pilon__uns (30227 bp) chr contig_6576_pilon__uns (10231 bp) chr contig_6577_pilon__uns (2098 bp) chr contig_6579_pilon__uns (379 bp) chr contig_6581_pilon__uns (50426 bp) chr contig_6588_pilon__uns (9989 bp) chr contig_6590_pilon__uns (5187 bp) chr contig_6592_pilon__uns (581 bp) chr contig_6597_pilon__uns (12122 bp) chr contig_6606_pilon__uns (673 bp) chr contig_6609_pilon__uns (1124 bp) chr contig_6615_pilon__uns (57129 bp) chr contig_6617_pilon__uns (1562 bp) chr contig_6619_pilon__uns (64971 bp) chr contig_661_pilon__uns (67949 bp) chr contig_6622_pilon__uns (35946 bp) chr contig_6629_pilon__uns (2137 bp) chr contig_6630_pilon__uns (4442 bp) chr contig_6637_pilon__uns (66106 bp) chr contig_6638_pilon__uns (992 bp) chr contig_6647_pilon__uns (4176 bp) chr contig_6652_pilon__uns (61069 bp) chr contig_6657_pilon__uns (506 bp) chr contig_6660_pilon__uns (457 bp) chr contig_6661_pilon__uns (990 bp) chr contig_6664_pilon__uns (2033 bp) chr contig_6665_pilon__uns (35338 bp) chr contig_6667_pilon__uns (207078 bp) chr contig_6670_pilon__uns (49329 bp) chr contig_6671_pilon__uns (1810 bp) chr contig_6672_pilon__uns (3166 bp) chr contig_6673_pilon__uns (2456 bp) chr contig_6675_pilon__uns (1003 bp) chr contig_6677_pilon__uns (1920 bp) chr contig_6680_pilon__uns (16586 bp) chr contig_6683_pilon__uns (3838 bp) chr contig_6687_pilon__uns (8573 bp) chr contig_668_pilon__uns (9405 bp) chr contig_6697_pilon__uns (5701 bp) chr contig_6698_pilon__uns (79361 bp) chr contig_669_pilon___frag_2___debris__uns (3001 bp) chr contig_6701_pilon__uns (1031 bp) chr contig_6704_pilon__uns (643 bp) chr contig_6709_pilon__uns (2446 bp) chr contig_670_pilon__uns (14837 bp) chr contig_6715_pilon__uns (5354 bp) chr contig_6719_pilon__uns (1892 bp) chr contig_6721_pilon__uns (14594 bp) chr contig_6725_pilon__uns (840 bp) chr contig_6733_pilon__uns (1628 bp) chr contig_6735_pilon__uns (733 bp) chr contig_6739_pilon__uns (502 bp) chr contig_6750_pilon__uns (311232 bp) chr contig_6753_pilon__uns (308 bp) chr contig_675_pilon__uns (88740 bp) chr contig_6760_pilon__uns (1218 bp) chr contig_6761_pilon__uns (30162 bp) chr contig_6764_pilon__uns (146866 bp) chr contig_6768_pilon__uns (675 bp) chr contig_6770_pilon__uns (9965 bp) chr contig_6772_pilon__uns (645 bp) chr contig_6779_pilon__uns (49655 bp) chr contig_6780_pilon__uns (887 bp) chr contig_6787_pilon__uns (3896 bp) chr contig_6793_pilon__uns (1312 bp) chr contig_6796_pilon__uns (3627 bp) chr contig_6799_pilon__uns (1656 bp) chr contig_679_pilon___frag_1__uns (151716 bp) chr contig_679_pilon___frag_2___debris__uns (5001 bp) chr contig_679_pilon___frag_3__uns (110217 bp) chr contig_6802_pilon__uns (29257 bp) chr contig_6807_pilon__uns (142355 bp) chr contig_680_pilon__uns (7332 bp) chr contig_6811_pilon__uns (5851 bp) chr contig_6813_pilon__uns (4770 bp) chr contig_6822_pilon__uns (93278 bp) chr contig_6823_pilon__uns (2573 bp) chr contig_6824_pilon__uns (14485 bp) chr contig_6826_pilon__uns (535 bp) chr contig_6829_pilon__uns (414 bp) chr contig_6833_pilon__uns (1296 bp) chr contig_6836_pilon__uns (2955 bp) chr contig_6841_pilon__uns (627 bp) chr contig_6843_pilon__uns (556 bp) chr contig_6844_pilon__uns (932 bp) chr contig_6845_pilon__uns (3503 bp) chr contig_684_pilon__uns (2634 bp) chr contig_6855_pilon__uns (888 bp) chr contig_6858_pilon__uns (2639 bp) chr contig_6859_pilon__uns (1190 bp) chr contig_6860_pilon__uns (37910 bp) chr contig_6861_pilon__uns (5823 bp) chr contig_6865_pilon__uns (11078 bp) chr contig_6866_pilon__uns (3743 bp) chr contig_6869_pilon__uns (9568 bp) chr contig_686_pilon__uns (75108 bp) chr contig_6870_pilon__uns (1731 bp) chr contig_6872_pilon__uns (1805 bp) chr contig_6875_pilon__uns (845 bp) chr contig_6876_pilon__uns (101206 bp) chr contig_6885_pilon__uns (525 bp) chr contig_6886_pilon__uns (10454 bp) chr contig_6891_pilon__uns (22078 bp) chr contig_6892_pilon__uns (518 bp) chr contig_6897_pilon__uns (7860 bp) chr contig_6898_pilon__uns (9711 bp) chr contig_6899_pilon__uns (1256 bp) chr contig_689_pilon__uns (8842 bp) chr contig_6901_pilon__uns (88361 bp) chr contig_6905_pilon__uns (11970 bp) chr contig_6906_pilon__uns (32253 bp) chr contig_6913_pilon__uns (112180 bp) chr contig_6915_pilon__uns (15319 bp) chr contig_6916_pilon__uns (35649 bp) chr contig_6918_pilon__uns (55057 bp) chr contig_6919_pilon__uns (864 bp) chr contig_6921_pilon__uns (625 bp) chr contig_6922_pilon__uns (5073 bp) chr contig_692_pilon__uns (268446 bp) chr contig_6932_pilon__uns (190962 bp) chr contig_6939_pilon__uns (7350 bp) chr contig_6949_pilon__uns (2797 bp) chr contig_6950_pilon__uns (545 bp) chr contig_6958_pilon__uns (1685 bp) chr contig_6959_pilon__uns (801 bp) chr contig_6966_pilon__uns (842 bp) chr contig_6967_pilon__uns (593 bp) chr contig_6970_pilon__uns (1649 bp) chr contig_6974_pilon__uns (4203 bp) chr contig_6976_pilon__uns (1731 bp) chr contig_6979_pilon__uns (10186 bp) chr contig_6982_pilon__uns (6141 bp) chr contig_6983_pilon__uns (2269 bp) chr contig_6987_pilon__uns (72055 bp) chr contig_6998_pilon__uns (825 bp) chr contig_7001_pilon__uns (4244 bp) chr contig_7003_pilon__uns (3324 bp) chr contig_7004_pilon___frag_2___debris__uns (2001 bp) chr contig_7006_pilon__uns (67105 bp) chr contig_7008_pilon__uns (2246 bp) chr contig_7011_pilon__uns (1388 bp) chr contig_7013_pilon__uns (98894 bp) chr contig_701_pilon__uns (1436 bp) chr contig_7021_pilon__uns (2573 bp) chr contig_7023_pilon__uns (559 bp) chr contig_7027_pilon__uns (10932 bp) chr contig_7028_pilon__uns (1526 bp) chr contig_7029_pilon__uns (351 bp) chr contig_702_pilon__uns (3929 bp) chr contig_7031_pilon__uns (21065 bp) chr contig_7032_pilon__uns (528 bp) chr contig_7035_pilon__uns (2130 bp) chr contig_7044_pilon__uns (211 bp) chr contig_7052_pilon__uns (572 bp) chr contig_7058_pilon__uns (1961 bp) chr contig_7064_pilon__uns (43589 bp) chr contig_7067_pilon__uns (669 bp) chr contig_7070_pilon__uns (39062 bp) chr contig_7074_pilon__uns (39774 bp) chr contig_7075_pilon__uns (1069 bp) chr contig_7076_pilon__uns (34581 bp) chr contig_7085_pilon__uns (133480 bp) chr contig_708_pilon__uns (1032 bp) chr contig_7090_pilon__uns (150333 bp) chr contig_7091_pilon__uns (3159 bp) chr contig_7094_pilon__uns (8783 bp) chr contig_709_pilon__uns (860 bp) chr contig_7105_pilon__uns (1931 bp) chr contig_7107_pilon__uns (1661 bp) chr contig_710_pilon__uns (8447 bp) chr contig_7110_pilon__uns (24618 bp) chr contig_7111_pilon__uns (55941 bp) chr contig_7112_pilon__uns (642 bp) chr contig_711_pilon__uns (8034 bp) chr contig_7120_pilon__uns (13544 bp) chr contig_7127_pilon__uns (79229 bp) chr contig_7132_pilon__uns (42623 bp) chr contig_7133_pilon__uns (51766 bp) chr contig_7134_pilon__uns (497 bp) chr contig_7142_pilon__uns (129148 bp) chr contig_7144_pilon__uns (83109 bp) chr contig_7146_pilon__uns (33994 bp) chr contig_7151_pilon__uns (1101 bp) chr contig_7153_pilon__uns (518 bp) chr contig_715_pilon__uns (33524 bp) chr contig_7162_pilon__uns (1307 bp) chr contig_7165_pilon__uns (1193 bp) chr contig_7169_pilon__uns (659 bp) chr contig_716_pilon__uns (11870 bp) chr contig_7173_pilon__uns (3762 bp) chr contig_7174_pilon__uns (90829 bp) chr contig_7179_pilon__uns (21004 bp) chr contig_7180_pilon__uns (9905 bp) chr contig_7181_pilon__uns (4076 bp) chr contig_7184_pilon__uns (71012 bp) chr contig_718_pilon__uns (35501 bp) chr contig_7195_pilon__uns (1453 bp) chr contig_7201_pilon__uns (9938 bp) chr contig_7202_pilon__uns (28252 bp) chr contig_7208_pilon__uns (4650 bp) chr contig_720_pilon__uns (1469 bp) chr contig_7210_pilon__uns (2225 bp) chr contig_7213_pilon__uns (59106 bp) chr contig_7215_pilon__uns (1818 bp) chr contig_7219_pilon__uns (674 bp) chr contig_7221_pilon__uns (7837 bp) chr contig_7224_pilon__uns (5722 bp) chr contig_7230_pilon__uns (5489 bp) chr contig_7235_pilon__uns (116013 bp) chr contig_7236_pilon__uns (1163 bp) chr contig_7237_pilon__uns (23244 bp) chr contig_7239_pilon__uns (1658 bp) chr contig_7248_pilon__uns (19403 bp) chr contig_7250_pilon__uns (683 bp) chr contig_7255_pilon__uns (28882 bp) chr contig_7269_pilon__uns (11930 bp) chr contig_726_pilon__uns (43230 bp) chr contig_7272_pilon__uns (72635 bp) chr contig_7276_pilon__uns (12871 bp) chr contig_7278_pilon__uns (2360 bp) chr contig_7281_pilon__uns (1801 bp) chr contig_7286_pilon__uns (3087 bp) chr contig_7293_pilon__uns (34230 bp) chr contig_7294_pilon__uns (23735 bp) chr contig_7298_pilon__uns (1068 bp) chr contig_7299_pilon__uns (691 bp) chr contig_7303_pilon__uns (4377 bp) chr contig_7307_pilon__uns (522 bp) chr contig_7309_pilon__uns (3094 bp) chr contig_7314_pilon__uns (8499 bp) chr contig_7316_pilon__uns (19404 bp) chr contig_731_pilon__uns (63761 bp) chr contig_7321_pilon__uns (174759 bp) chr contig_7322_pilon__uns (1056 bp) chr contig_7329_pilon__uns (1997 bp) chr contig_732_pilon__uns (127135 bp) chr contig_7330_pilon__uns (6401 bp) chr contig_7339_pilon__uns (47300 bp) chr contig_733_pilon__uns (511 bp) chr contig_7342_pilon__uns (1217 bp) chr contig_7343_pilon__uns (6421 bp) chr contig_7344_pilon__uns (1567 bp) chr contig_7345_pilon__uns (1030 bp) chr contig_7347_pilon__uns (7899 bp) chr contig_7350_pilon__uns (27420 bp) chr contig_7353_pilon__uns (127147 bp) chr contig_7354_pilon__uns (1747 bp) chr contig_7357_pilon__uns (497 bp) chr contig_7359_pilon__uns (1172 bp) chr contig_735_pilon__uns (36842 bp) chr contig_7361_pilon__uns (885 bp) chr contig_7365_pilon__uns (954 bp) chr contig_7366_pilon__uns (1806 bp) chr contig_7371_pilon__uns (13364 bp) chr contig_7373_pilon__uns (56235 bp) chr contig_7374_pilon__uns (32978 bp) chr contig_7378_pilon__uns (139583 bp) chr contig_7381_pilon__uns (1044 bp) chr contig_7384_pilon__uns (27289 bp) chr contig_7393_pilon__uns (15605 bp) chr contig_7397_pilon__uns (19654 bp) chr contig_7401_pilon__uns (1011 bp) chr contig_7408_pilon__uns (13334 bp) chr contig_7410_pilon__uns (12072 bp) chr contig_7412_pilon__uns (62924 bp) chr contig_7417_pilon__uns (2614 bp) chr contig_7418_pilon__uns (51913 bp) chr contig_7426_pilon__uns (9753 bp) chr contig_7428_pilon__uns (87860 bp) chr contig_7429_pilon__uns (1384 bp) chr contig_7430_pilon__uns (1593 bp) chr contig_7433_pilon__uns (19142 bp) chr contig_7434_pilon__uns (2091 bp) chr contig_7437_pilon__uns (14948 bp) chr contig_7439_pilon__uns (37830 bp) chr contig_743_pilon__uns (6987 bp) chr contig_7442_pilon__uns (6265 bp) chr contig_7443_pilon__uns (2318 bp) chr contig_7445_pilon__uns (37229 bp) chr contig_7446_pilon__uns (49728 bp) chr contig_7448_pilon__uns (54959 bp) chr contig_7449_pilon__uns (542 bp) chr contig_744_pilon__uns (2902 bp) chr contig_7450_pilon__uns (363 bp) chr contig_7453_pilon__uns (593 bp) chr contig_7456_pilon__uns (17444 bp) chr contig_7459_pilon__uns (1403 bp) chr contig_7464_pilon__uns (165025 bp) chr contig_7467_pilon__uns (50487 bp) chr contig_7474_pilon__uns (996 bp) chr contig_7476_pilon__uns (1265 bp) chr contig_7477_pilon__uns (83534 bp) chr contig_7481_pilon__uns (838 bp) chr contig_7484_pilon__uns (15698 bp) chr contig_7487_pilon__uns (1846 bp) chr contig_7500_pilon__uns (53714 bp) chr contig_7507_pilon__uns (37832 bp) chr contig_7509_pilon__uns (1188 bp) chr contig_750_pilon__uns (69689 bp) chr contig_7511_pilon__uns (762 bp) chr contig_7513_pilon__uns (5365 bp) chr contig_7521_pilon__uns (11134 bp) chr contig_7525_pilon__uns (2066 bp) chr contig_7527_pilon__uns (551 bp) chr contig_7528_pilon__uns (559 bp) chr contig_7531_pilon__uns (560 bp) chr contig_7533_pilon__uns (2182 bp) chr contig_7538_pilon__uns (1593 bp) chr contig_753_pilon__uns (3897 bp) chr contig_7540_pilon__uns (811 bp) chr contig_7545_pilon__uns (2483 bp) chr contig_7556_pilon__uns (53102 bp) chr contig_7560_pilon__uns (40512 bp) chr contig_7562_pilon__uns (215 bp) chr contig_7563_pilon__uns (713 bp) chr contig_7565_pilon__uns (90528 bp) chr contig_7569_pilon__uns (8511 bp) chr contig_756_pilon__uns (48839 bp) chr contig_7571_pilon__uns (551 bp) chr contig_7572_pilon__uns (47023 bp) chr contig_7574_pilon__uns (246 bp) chr contig_7575_pilon__uns (3383 bp) chr contig_7576_pilon__uns (3831 bp) chr contig_7577_pilon__uns (8146 bp) chr contig_7579_pilon__uns (43397 bp) chr contig_757_pilon__uns (166044 bp) chr contig_7582_pilon__uns (11267 bp) chr contig_7584_pilon__uns (4632 bp) chr contig_7586_pilon__uns (3000 bp) chr contig_7587_pilon__uns (2835 bp) chr contig_7589_pilon__uns (1058 bp) chr contig_758_pilon__uns (25581 bp) chr contig_7590_pilon__uns (2794 bp) chr contig_7591_pilon__uns (3485 bp) chr contig_7594_pilon__uns (882 bp) chr contig_7606_pilon__uns (1519 bp) chr contig_7607_pilon__uns (49100 bp) chr contig_7609_pilon__uns (27912 bp) chr contig_7610_pilon__uns (701 bp) chr contig_7611_pilon__uns (5128 bp) chr contig_7616_pilon__uns (78600 bp) chr contig_7619_pilon__uns (2434 bp) chr contig_7620_pilon__uns (1769 bp) chr contig_7621_pilon__uns (5746 bp) chr contig_7629_pilon__uns (47076 bp) chr contig_762_pilon__uns (70088 bp) chr contig_7632_pilon__uns (3794 bp) chr contig_7633_pilon__uns (50352 bp) chr contig_7643_pilon__uns (12243 bp) chr contig_7645_pilon__uns (15435 bp) chr contig_7649_pilon__uns (4596 bp) chr contig_7655_pilon__uns (47185 bp) chr contig_765_pilon__uns (12179 bp) chr contig_7662_pilon__uns (7930 bp) chr contig_7665_pilon__uns (9751 bp) chr contig_7668_pilon__uns (8835 bp) chr contig_7670_pilon__uns (20847 bp) chr contig_7672_pilon__uns (5043 bp) chr contig_7677_pilon__uns (1831 bp) chr contig_7683_pilon__uns (2970 bp) chr contig_7686_pilon__uns (34122 bp) chr contig_7687_pilon__uns (25885 bp) chr contig_7691_pilon__uns (7125 bp) chr contig_7696_pilon__uns (3139 bp) chr contig_7699_pilon__uns (1056 bp) chr contig_7701_pilon__uns (1132 bp) chr contig_7703_pilon__uns (78557 bp) chr contig_7708_pilon__uns (55250 bp) chr contig_7712_pilon__uns (2024 bp) chr contig_7713_pilon__uns (11400 bp) chr contig_7714_pilon__uns (1057 bp) chr contig_7732_pilon__uns (1850 bp) chr contig_7734_pilon__uns (179759 bp) chr contig_7735_pilon__uns (689 bp) chr contig_7737_pilon__uns (30690 bp) chr contig_7741_pilon__uns (25085 bp) chr contig_7742_pilon__uns (11908 bp) chr contig_7743_pilon__uns (19573 bp) chr contig_7754_pilon__uns (8433 bp) chr contig_7755_pilon__uns (42949 bp) chr contig_7756_pilon__uns (824 bp) chr contig_7762_pilon__uns (44173 bp) chr contig_7765_pilon__uns (23510 bp) chr contig_7767_pilon__uns (24094 bp) chr contig_7771_pilon__uns (534 bp) chr contig_7773_pilon__uns (21793 bp) chr contig_7774_pilon__uns (12511 bp) chr contig_777_pilon__uns (804 bp) chr contig_7780_pilon__uns (642 bp) chr contig_7783_pilon__uns (9954 bp) chr contig_7784_pilon__uns (2616 bp) chr contig_7785_pilon__uns (170967 bp) chr contig_7792_pilon__uns (13021 bp) chr contig_7795_pilon__uns (2068 bp) chr contig_7801_pilon__uns (617 bp) chr contig_7805_pilon__uns (815 bp) chr contig_7814_pilon__uns (47131 bp) chr contig_7816_pilon__uns (19530 bp) chr contig_7818_pilon__uns (2430 bp) chr contig_7819_pilon__uns (14077 bp) chr contig_781_pilon__uns (9344 bp) chr contig_7822_pilon__uns (27276 bp) chr contig_7828_pilon__uns (711 bp) chr contig_7829_pilon__uns (291328 bp) chr contig_782_pilon__uns (760 bp) chr contig_7830_pilon__uns (108953 bp) chr contig_7836_pilon__uns (795 bp) chr contig_783_pilon__uns (234756 bp) chr contig_7840_pilon__uns (10329 bp) chr contig_7845_pilon__uns (5649 bp) chr contig_7846_pilon__uns (13810 bp) chr contig_7848_pilon__uns (476 bp) chr contig_7849_pilon__uns (5637 bp) chr contig_7863_pilon__uns (5935 bp) chr contig_7866_pilon__uns (23609 bp) chr contig_7867_pilon__uns (89727 bp) chr contig_786_pilon__uns (2533 bp) chr contig_7871_pilon__uns (639 bp) chr contig_7872_pilon__uns (12065 bp) chr contig_7873_pilon__uns (1082 bp) chr contig_7875_pilon__uns (3310 bp) chr contig_7879_pilon__uns (2029 bp) chr contig_787_pilon___frag_1__uns (9589 bp) chr contig_787_pilon___frag_2___debris__uns (3001 bp) chr contig_787_pilon___frag_3__uns (24001 bp) chr contig_787_pilon___frag_4___debris__uns (2001 bp) chr contig_787_pilon___frag_5__uns (50139 bp) chr contig_7880_pilon__uns (30844 bp) chr contig_7881_pilon__uns (2153 bp) chr contig_7884_pilon__uns (1304 bp) chr contig_7886_pilon__uns (4435 bp) chr contig_7890_pilon__uns (8905 bp) chr contig_7892_pilon__uns (45436 bp) chr contig_7893_pilon__uns (771 bp) chr contig_7894_pilon__uns (82881 bp) chr contig_7899_pilon__uns (532 bp) chr contig_7900_pilon__uns (5786 bp) chr contig_7906_pilon__uns (2768 bp) chr contig_7908_pilon__uns (16993 bp) chr contig_7917_pilon__uns (519 bp) chr contig_791_pilon__uns (1953 bp) chr contig_7928_pilon__uns (24411 bp) chr contig_7931_pilon__uns (7750 bp) chr contig_7932_pilon__uns (616 bp) chr contig_7935_pilon__uns (6098 bp) chr contig_7938_pilon__uns (626 bp) chr contig_7939_pilon__uns (8080 bp) chr contig_793_pilon__uns (2570 bp) chr contig_7940_pilon__uns (782 bp) chr contig_7947_pilon__uns (69876 bp) chr contig_7949_pilon__uns (628 bp) chr contig_7952_pilon__uns (9227 bp) chr contig_7955_pilon__uns (1965 bp) chr contig_7957_pilon__uns (3043 bp) chr contig_7958_pilon__uns (804 bp) chr contig_795_pilon__uns (3242 bp) chr contig_7963_pilon__uns (2773 bp) chr contig_7968_pilon__uns (9134 bp) chr contig_7969_pilon__uns (11230 bp) chr contig_7976_pilon__uns (1975 bp) chr contig_7977_pilon__uns (600 bp) chr contig_7980_pilon__uns (1980 bp) chr contig_7981_pilon__uns (31818 bp) chr contig_7983_pilon__uns (13290 bp) chr contig_7984_pilon__uns (150825 bp) chr contig_798_pilon__uns (227830 bp) chr contig_7997_pilon__uns (684 bp) chr contig_7999_pilon__uns (38532 bp) chr contig_79_pilon__uns (43352 bp) chr contig_8001_pilon__uns (958 bp) chr contig_8002_pilon__uns (4582 bp) chr contig_8011_pilon__uns (597 bp) chr contig_8012_pilon__uns (3814 bp) chr contig_8013_pilon__uns (1215 bp) chr contig_8018_pilon__uns (670 bp) chr contig_8020_pilon__uns (7663 bp) chr contig_8021_pilon__uns (4816 bp) chr contig_8024_pilon__uns (493 bp) chr contig_8025_pilon__uns (53780 bp) chr contig_8027_pilon__uns (102026 bp) chr contig_8028_pilon__uns (4828 bp) chr contig_8033_pilon__uns (5247 bp) chr contig_8034_pilon__uns (2533 bp) chr contig_8036_pilon__uns (1096 bp) chr contig_803_pilon__uns (216696 bp) chr contig_8041_pilon__uns (5403 bp) chr contig_8055_pilon__uns (759 bp) chr contig_8057_pilon__uns (1100 bp) chr contig_8059_pilon__uns (738 bp) chr contig_8065_pilon__uns (2436 bp) chr contig_8070_pilon__uns (65374 bp) chr contig_8071_pilon__uns (1411 bp) chr contig_8076_pilon__uns (16461 bp) chr contig_8089_pilon__uns (5108 bp) chr contig_8090_pilon__uns (704 bp) chr contig_8093_pilon__uns (46219 bp) chr contig_8096_pilon__uns (12502 bp) chr contig_80_pilon__uns (91059 bp) chr contig_8100_pilon__uns (619 bp) chr contig_8101_pilon__uns (40547 bp) chr contig_8103_pilon__uns (5346 bp) chr contig_8105_pilon__uns (136730 bp) chr contig_8106_pilon__uns (2093 bp) chr contig_8121_pilon__uns (482 bp) chr contig_8129_pilon__uns (527 bp) chr contig_8131_pilon__uns (16087 bp) chr contig_8140_pilon__uns (1102 bp) chr contig_8141_pilon__uns (502 bp) chr contig_8145_pilon__uns (20158 bp) chr contig_8146_pilon__uns (625 bp) chr contig_8148_pilon__uns (1802 bp) chr contig_8150_pilon__uns (498 bp) chr contig_8153_pilon__uns (3793 bp) chr contig_8154_pilon__uns (63970 bp) chr contig_8157_pilon__uns (1153 bp) chr contig_8158_pilon__uns (4993 bp) chr contig_8162_pilon__uns (9824 bp) chr contig_8165_pilon__uns (2346 bp) chr contig_816_pilon__uns (242892 bp) chr contig_8170_pilon__uns (1637 bp) chr contig_8171_pilon__uns (1088 bp) chr contig_8172_pilon__uns (1241 bp) chr contig_8180_pilon__uns (900 bp) chr contig_8182_pilon__uns (1313 bp) chr contig_8183_pilon__uns (11387 bp) chr contig_8186_pilon__uns (483 bp) chr contig_8189_pilon__uns (6075 bp) chr contig_8192_pilon__uns (1098 bp) chr contig_8195_pilon__uns (3599 bp) chr contig_8198_pilon__uns (504 bp) chr contig_8202_pilon__uns (7205 bp) chr contig_8204_pilon__uns (1179 bp) chr contig_8206_pilon__uns (6598 bp) chr contig_8207_pilon__uns (1150 bp) chr contig_8212_pilon__uns (9194 bp) chr contig_8213_pilon__uns (3380 bp) chr contig_8217_pilon__uns (876 bp) chr contig_8219_pilon__uns (4178 bp) chr contig_8222_pilon__uns (424 bp) chr contig_8223_pilon__uns (968 bp) chr contig_8224_pilon__uns (55660 bp) chr contig_8225_pilon__uns (10375 bp) chr contig_8227_pilon__uns (1045 bp) chr contig_8228_pilon__uns (5801 bp) chr contig_8231_pilon__uns (655 bp) chr contig_8232_pilon__uns (72277 bp) chr contig_8233_pilon__uns (9436 bp) chr contig_8242_pilon__uns (17300 bp) chr contig_8251_pilon__uns (1551 bp) chr contig_8252_pilon__uns (6619 bp) chr contig_8253_pilon__uns (1800 bp) chr contig_8254_pilon___frag_2___debris__uns (1001 bp) chr contig_8257_pilon__uns (1083 bp) chr contig_8259_pilon__uns (14377 bp) chr contig_8260_pilon__uns (1134 bp) chr contig_8261_pilon__uns (1621 bp) chr contig_8262_pilon__uns (58374 bp) chr contig_8268_pilon__uns (723 bp) chr contig_8269_pilon__uns (1763 bp) chr contig_8272_pilon__uns (925 bp) chr contig_8277_pilon__uns (564 bp) chr contig_8278_pilon__uns (546 bp) chr contig_8280_pilon__uns (695 bp) chr contig_8286_pilon__uns (1141 bp) chr contig_8289_pilon__uns (988 bp) chr contig_8296_pilon__uns (81906 bp) chr contig_8298_pilon__uns (1131 bp) chr contig_8299_pilon__uns (812 bp) chr contig_8302_pilon__uns (862 bp) chr contig_8303_pilon__uns (1005 bp) chr contig_8305_pilon__uns (1068 bp) chr contig_8306_pilon__uns (7296 bp) chr contig_830_pilon___frag_1__uns (77371 bp) chr contig_830_pilon___frag_2___debris__uns (2001 bp) chr contig_830_pilon___frag_3__uns (70138 bp) chr contig_8310_pilon___frag_1__uns (59872 bp) chr contig_8310_pilon___frag_2___debris__uns (5001 bp) chr contig_8310_pilon___frag_3__uns (44643 bp) chr contig_8316_pilon__uns (1156 bp) chr contig_8317_pilon__uns (949 bp) chr contig_8318_pilon__uns (65318 bp) chr contig_8321_pilon__uns (5080 bp) chr contig_8323_pilon__uns (527 bp) chr contig_8324_pilon__uns (12317 bp) chr contig_8327_pilon__uns (6911 bp) chr contig_8328_pilon__uns (3016 bp) chr contig_8347_pilon__uns (741 bp) chr contig_834_pilon__uns (1063 bp) chr contig_8362_pilon__uns (96485 bp) chr contig_8363_pilon__uns (2548 bp) chr contig_8375_pilon__uns (1006 bp) chr contig_8381_pilon__uns (12593 bp) chr contig_8383_pilon__uns (3398 bp) chr contig_8388_pilon__uns (13651 bp) chr contig_8398_pilon__uns (11271 bp) chr contig_8400_pilon__uns (4188 bp) chr contig_8405_pilon__uns (79715 bp) chr contig_8414_pilon__uns (3031 bp) chr contig_8417_pilon__uns (530 bp) chr contig_8422_pilon__uns (27518 bp) chr contig_8434_pilon__uns (78063 bp) chr contig_8439_pilon__uns (3573 bp) chr contig_843_pilon__uns (50289 bp) chr contig_8450_pilon__uns (3727 bp) chr contig_8456_pilon__uns (2396 bp) chr contig_8462_pilon__uns (5034 bp) chr contig_846_pilon__uns (80700 bp) chr contig_8470_pilon__uns (572 bp) chr contig_8471_pilon__uns (3020 bp) chr contig_847_pilon__uns (71338 bp) chr contig_8489_pilon__uns (13234 bp) chr contig_848_pilon__uns (70240 bp) chr contig_8491_pilon__uns (3201 bp) chr contig_8492_pilon__uns (2630 bp) chr contig_8503_pilon__uns (42080 bp) chr contig_8509_pilon__uns (16330 bp) chr contig_850_pilon__uns (32668 bp) chr contig_8511_pilon__uns (2081 bp) chr contig_8514_pilon__uns (1440 bp) chr contig_851_pilon__uns (36618 bp) chr contig_8527_pilon__uns (2770 bp) chr contig_852_pilon___frag_1__uns (82888 bp) chr contig_852_pilon___frag_2___debris__uns (2001 bp) chr contig_852_pilon___frag_3__uns (46458 bp) chr contig_8530_pilon__uns (2196 bp) chr contig_8536_pilon__uns (2567 bp) chr contig_8543_pilon__uns (2659 bp) chr contig_8544_pilon__uns (24320 bp) chr contig_8546_pilon__uns (20430 bp) chr contig_8548_pilon__uns (341 bp) chr contig_8549_pilon__uns (23276 bp) chr contig_8550_pilon__uns (48458 bp) chr contig_855_pilon__uns (17464 bp) chr contig_8560_pilon__uns (96554 bp) chr contig_8570_pilon__uns (13680 bp) chr contig_8577_pilon__uns (1350 bp) chr contig_8595_pilon__uns (10144 bp) chr contig_8598_pilon__uns (2135 bp) chr contig_85_pilon__uns (55958 bp) chr contig_8601_pilon__uns (2625 bp) chr contig_8606_pilon__uns (937 bp) chr contig_8609_pilon__uns (2912 bp) chr contig_860_pilon__uns (5975 bp) chr contig_8610_pilon__uns (3101 bp) chr contig_8615_pilon__uns (467 bp) chr contig_8616_pilon__uns (1722 bp) chr contig_8617_pilon__uns (73123 bp) chr contig_8618_pilon__uns (2087 bp) chr contig_861_pilon__uns (7439 bp) chr contig_8620_pilon__uns (1020 bp) chr contig_8621_pilon__uns (63859 bp) chr contig_8624_pilon__uns (8217 bp) chr contig_8626_pilon__uns (9308 bp) chr contig_8628_pilon__uns (4281 bp) chr contig_8629_pilon__uns (9078 bp) chr contig_8633_pilon__uns (4480 bp) chr contig_8634_pilon__uns (3444 bp) chr contig_8642_pilon__uns (758 bp) chr contig_8647_pilon__uns (1648 bp) chr contig_8656_pilon__uns (4419 bp) chr contig_8658_pilon__uns (2056 bp) chr contig_865_pilon__uns (3675 bp) chr contig_8661_pilon__uns (2426 bp) chr contig_8665_pilon__uns (120408 bp) chr contig_8669_pilon__uns (856 bp) chr contig_8670_pilon__uns (3216 bp) chr contig_8671_pilon__uns (901 bp) chr contig_8673_pilon__uns (3725 bp) chr contig_8675_pilon__uns (238 bp) chr contig_8678_pilon__uns (949 bp) chr contig_867_pilon__uns (3159 bp) chr contig_8688_pilon__uns (2641 bp) chr contig_8689_pilon__uns (12883 bp) chr contig_868_pilon__uns (4456 bp) chr contig_8697_pilon__uns (1318 bp) chr contig_86_pilon__uns (182895 bp) chr contig_8703_pilon__uns (2835 bp) chr contig_8712_pilon__uns (2435 bp) chr contig_8718_pilon__uns (4259 bp) chr contig_8733_pilon__uns (24751 bp) chr contig_8737_pilon__uns (1871 bp) chr contig_873_pilon__uns (33210 bp) chr contig_8746_pilon__uns (29296 bp) chr contig_8751_pilon__uns (3031 bp) chr contig_8754_pilon__uns (5949 bp) chr contig_8761_pilon__uns (2585 bp) chr contig_8765_pilon__uns (12506 bp) chr contig_8769_pilon__uns (924 bp) chr contig_8774_pilon__uns (892 bp) chr contig_878_pilon__uns (4009 bp) chr contig_883_pilon__uns (15642 bp) chr contig_888_pilon__uns (2987 bp) chr contig_891_pilon__uns (94943 bp) chr contig_898_pilon___frag_1__uns (26501 bp) chr contig_898_pilon___frag_2___debris__uns (5001 bp) chr contig_899_pilon__uns (46917 bp) chr contig_902_pilon__uns (740 bp) chr contig_909_pilon__uns (1612 bp) chr contig_913_pilon__uns (2294 bp) chr contig_917_pilon__uns (9339 bp) chr contig_91_pilon__uns (36317 bp) chr contig_928_pilon__uns (1431 bp) chr contig_932_pilon__uns (55711 bp) chr contig_933_pilon__uns (10616 bp) chr contig_941_pilon__uns (27219 bp) chr contig_949_pilon__uns (15576 bp) chr contig_951_pilon__uns (70592 bp) chr contig_953_pilon__uns (78497 bp) chr contig_957_pilon___frag_2___debris__uns (3001 bp) chr contig_958_pilon__uns (50155 bp) chr contig_959_pilon__uns (15123 bp) chr contig_961_pilon___frag_1__uns (61407 bp) chr contig_961_pilon___frag_2___debris__uns (5001 bp) chr contig_961_pilon___frag_3__uns (136001 bp) chr contig_961_pilon___frag_4___debris__uns (5001 bp) chr contig_961_pilon___frag_5__uns (49432 bp) chr contig_967_pilon__uns (33718 bp) chr contig_969_pilon__uns (5031 bp) chr contig_970_pilon__uns (2987 bp) chr contig_973_pilon__uns (738 bp) chr contig_975_pilon__uns (1394 bp) chr contig_980_pilon___frag_2___debris__uns (5001 bp) chr contig_988_pilon__uns (1201 bp) chr contig_989_pilon__uns (2782 bp) chr contig_991_pilon__uns (38039 bp) chr contig_992_pilon__uns (30809 bp) chr scaffold_11_pilon__uns (261324 bp) chr scaffold_4415_pilon__uns (144318 bp) chr scaffold_546_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_1__uns (36977 bp) chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp) chr scaffold_5852_pilon___frag_3__uns (64971 bp) chr scaffold_6472_pilon__uns (101702 bp) chr scaffold_7122_pilon__uns (288074 bp) chr scaffold_75_pilon__uns (171814 bp) Stored sequence information of 2752 chromosomes/scaffolds in total ============================================================================== Methylation information will now be written into a genome-wide cytosine report ============================================================================== >>> Writing genome-wide cytosine report to: CH10_11_S20_L001.CpG_report.txt <<< Storing all covered cytosine positions for chromosome: PGA_scaffold0__40_contigs__length_4818635 Writing cytosine report for chromosome PGA_scaffold0__40_contigs__length_4818635 (stored 203 different covered positions) Writing cytosine report for chromosome PGA_scaffold1__111_contigs__length_23635802 (stored 433 different covered positions) Writing cytosine report for chromosome PGA_scaffold2__216_contigs__length_42616187 (stored 770 different covered positions) Writing cytosine report for chromosome PGA_scaffold3__77_contigs__length_22140449 (stored 445 different covered positions) Writing cytosine report for chromosome PGA_scaffold4__118_contigs__length_24133938 (stored 528 different covered positions) Writing cytosine report for chromosome PGA_scaffold5__54_contigs__length_17529967 (stored 430 different covered positions) Writing cytosine report for chromosome PGA_scaffold7__77_contigs__length_16129408 (stored 358 different covered positions) Writing cytosine report for chromosome PGA_scaffold8__70_contigs__length_6254265 (stored 247 different covered positions) Writing cytosine report for chromosome PGA_scaffold10__58_contigs__length_8083807 (stored 330 different covered positions) Writing cytosine report for chromosome PGA_scaffold11__78_contigs__length_11409253 (stored 404 different covered positions) Writing cytosine report for chromosome PGA_scaffold12__214_contigs__length_38711105 (stored 771 different covered positions) Writing cytosine report for chromosome PGA_scaffold13__56_contigs__length_10281103 (stored 291 different covered positions) Writing cytosine report for chromosome PGA_scaffold14__49_contigs__length_6382615 (stored 426 different covered positions) Writing cytosine report for chromosome PGA_scaffold15__74_contigs__length_14466968 (stored 269 different covered positions) Writing cytosine report for chromosome PGA_scaffold16__99_contigs__length_13714835 (stored 271 different covered positions) Writing cytosine report for chromosome PGA_scaffold17__171_contigs__length_27881435 (stored 520 different covered positions) Writing cytosine report for chromosome PGA_scaffold18__98_contigs__length_15388888 (stored 421 different covered positions) Writing cytosine report for chromosome PGA_scaffold19__65_contigs__length_13296201 (stored 385 different covered positions) Writing cytosine report for chromosome PGA_scaffold20__42_contigs__length_7444180 (stored 365 different covered positions) Writing cytosine report for chromosome PGA_scaffold21__67_contigs__length_16858916 (stored 401 different covered positions) Writing cytosine report for chromosome PGA_scaffold22__59_contigs__length_10008237 (stored 290 different covered positions) Writing cytosine report for chromosome PGA_scaffold23__65_contigs__length_9586800 (stored 284 different covered positions) Writing cytosine report for chromosome PGA_scaffold24__25_contigs__length_9615596 (stored 191 different covered positions) Writing cytosine report for chromosome PGA_scaffold25__121_contigs__length_9021638 (stored 298 different covered positions) Writing cytosine report for chromosome PGA_scaffold26__34_contigs__length_3174094 (stored 181 different covered positions) Writing cytosine report for chromosome PGA_scaffold27__24_contigs__length_4511419 (stored 215 different covered positions) Writing cytosine report for chromosome PGA_scaffold28__73_contigs__length_10794191 (stored 213 different covered positions) Writing cytosine report for chromosome PGA_scaffold29__63_contigs__length_7458616 (stored 548 different covered positions) Writing cytosine report for chromosome PGA_scaffold30__53_contigs__length_3533588 (stored 194 different covered positions) Writing cytosine report for chromosome PGA_scaffold31__35_contigs__length_1951197 (stored 237 different covered positions) Writing cytosine report for chromosome PGA_scaffold32__48_contigs__length_8091588 (stored 451 different covered positions) Writing cytosine report for chromosome PGA_scaffold33__68_contigs__length_5591008 (stored 338 different covered positions) Writing cytosine report for chromosome PGA_scaffold34__18_contigs__length_2048619 (stored 224 different covered positions) Writing cytosine report for chromosome PGA_scaffold35__36_contigs__length_7416912 (stored 213 different covered positions) Writing cytosine report for chromosome PGA_scaffold36__50_contigs__length_8312113 (stored 364 different covered positions) Writing cytosine report for chromosome PGA_scaffold37__114_contigs__length_22981779 (stored 441 different covered positions) Writing cytosine report for chromosome PGA_scaffold38__30_contigs__length_10707134 (stored 306 different covered positions) Writing cytosine report for chromosome PGA_scaffold39__82_contigs__length_19157343 (stored 378 different covered positions) Writing cytosine report for chromosome PGA_scaffold40__81_contigs__length_9975379 (stored 228 different covered positions) Writing cytosine report for chromosome PGA_scaffold41__67_contigs__length_15779270 (stored 283 different covered positions) Writing cytosine report for chromosome PGA_scaffold42__119_contigs__length_25812110 (stored 407 different covered positions) Writing cytosine report for chromosome PGA_scaffold43__161_contigs__length_26349757 (stored 581 different covered positions) Writing cytosine report for chromosome PGA_scaffold44__101_contigs__length_25971783 (stored 487 different covered positions) Writing cytosine report for chromosome PGA_scaffold45__51_contigs__length_13476971 (stored 304 different covered positions) Writing cytosine report for chromosome PGA_scaffold46__73_contigs__length_12693875 (stored 414 different covered positions) Writing cytosine report for chromosome PGA_scaffold47__164_contigs__length_21858264 (stored 459 different covered positions) Writing cytosine report for chromosome PGA_scaffold48__117_contigs__length_14149252 (stored 377 different covered positions) Writing cytosine report for chromosome contig_49_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_50_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_62_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_157_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_177_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_185_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_204_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_210_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_219_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_220_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_248_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_282_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_289_pilon___frag_7__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_303_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_315_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_327_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_352_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_372_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_3__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_388_pilon___frag_5__uns (stored 34 different covered positions) Writing cytosine report for chromosome contig_389_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_395_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_414_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_422_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_440_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_482_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_547_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_611_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_620_pilon___frag_2___debris__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_633_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_1__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_679_pilon___frag_3__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_692_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_726_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_731_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_732_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_757_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_783_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_798_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_803_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_848_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_851_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_878_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_891_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_932_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_1071_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_1125_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_1399_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1424_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1439_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_1444_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1460_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1492_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1525_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1527_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1533_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_1560_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_1622_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1631_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1655_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1706_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1771_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1797_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_1810_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_1883_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1892_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_1931_pilon___frag_5__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1939_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_1963_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_1993_pilon___frag_3__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2042_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2087_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2286_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2295_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_2322_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_1__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_2345_pilon___frag_3__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2392_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_1__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2492_pilon___frag_3__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2512_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2525_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_2527_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_2643_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2699_pilon__uns (stored 22 different covered positions) Writing cytosine report for chromosome contig_2717_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_2725_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_2763_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2879_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_2949_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_2950_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_2968_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_2981_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3032_pilon___frag_1__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_3088_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3120_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_3132_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3224_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_3233_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3236_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_3237_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3320_pilon__uns (stored 29 different covered positions) Writing cytosine report for chromosome contig_3321_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_3351_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3368_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3421_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_3456_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3624_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_3732_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_3779_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_3824_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_3832_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_3996_pilon__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_4067_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4182_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_4197_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4246_pilon__uns (stored 13 different covered positions) Writing cytosine report for chromosome contig_4267_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_4268_pilon__uns (stored 32 different covered positions) Writing cytosine report for chromosome contig_4274_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4335_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_4389_pilon__uns (stored 16 different covered positions) Writing cytosine report for chromosome contig_4392_pilon___frag_1__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4413_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4441_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4460_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_4480_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4519_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4530_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4539_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_4540_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4570_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_4678_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4707_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_4728_pilon___frag_1__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4757_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_4803_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_4843_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_4854_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_4950_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_4955_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_4966_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5002_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5025_pilon__uns (stored 15 different covered positions) Writing cytosine report for chromosome contig_5042_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5066_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5123_pilon___frag_1__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5127_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome contig_5135_pilon___frag_3__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5160_pilon__uns (stored 25 different covered positions) Writing cytosine report for chromosome contig_5178_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5183_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5190_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_5226_pilon__uns (stored 36 different covered positions) Writing cytosine report for chromosome contig_5246_pilon__uns (stored 18 different covered positions) Writing cytosine report for chromosome contig_5258_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5295_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5357_pilon___frag_1__uns (stored 17 different covered positions) Writing cytosine report for chromosome contig_5379_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_5398_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5415_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5444_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5479_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5587_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5623_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5630_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5637_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_5657_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5681_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5713_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_5714_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_5765_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5844_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5849_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_5854_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_5873_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_5916_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_5937_pilon__uns (stored 14 different covered positions) Writing cytosine report for chromosome contig_5940_pilon__uns (stored 19 different covered positions) Writing cytosine report for chromosome contig_5947_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_5971_pilon__uns (stored 37 different covered positions) Writing cytosine report for chromosome contig_6040_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_6404_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_6551_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_6667_pilon__uns (stored 23 different covered positions) Writing cytosine report for chromosome contig_6764_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_6822_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6876_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_6913_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_6932_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_6976_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7085_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7090_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7127_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7142_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7230_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7255_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7272_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7293_pilon__uns (stored 10 different covered positions) Writing cytosine report for chromosome contig_7321_pilon__uns (stored 11 different covered positions) Writing cytosine report for chromosome contig_7353_pilon__uns (stored 12 different covered positions) Writing cytosine report for chromosome contig_7378_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7397_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_7448_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_7464_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7509_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7521_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7556_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7560_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7565_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7607_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7633_pilon__uns (stored 7 different covered positions) Writing cytosine report for chromosome contig_7703_pilon__uns (stored 1 different covered positions) Writing cytosine report for chromosome contig_7708_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_7734_pilon__uns (stored 31 different covered positions) Writing cytosine report for chromosome contig_7755_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7816_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_7830_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome contig_7884_pilon__uns (stored 8 different covered positions) Writing cytosine report for chromosome contig_7894_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_7908_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8106_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8224_pilon__uns (stored 2 different covered positions) Writing cytosine report for chromosome contig_8232_pilon__uns (stored 4 different covered positions) Writing cytosine report for chromosome contig_8296_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8310_pilon___frag_1__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8318_pilon__uns (stored 5 different covered positions) Writing cytosine report for chromosome contig_8362_pilon__uns (stored 6 different covered positions) Writing cytosine report for chromosome contig_8405_pilon__uns (stored 24 different covered positions) Writing cytosine report for chromosome contig_8434_pilon__uns (stored 9 different covered positions) Writing cytosine report for chromosome contig_8549_pilon__uns (stored 3 different covered positions) Writing cytosine report for chromosome scaffold_11_pilon__uns (stored 21 different covered positions) Writing cytosine report for chromosome scaffold_75_pilon__uns (stored 2 different covered positions) Writing cytosine report for last chromosome scaffold_7122_pilon__uns (stored 3 different covered positions) Finished writing out cytosine report for covered chromosomes (processed 282 chromosomes/scaffolds in total) Now processing chromosomes that were not covered by any methylation calls in the coverage file... Writing cytosine report for not covered chromosome PGA_scaffold6__2_contigs__length_4500 Writing cytosine report for not covered chromosome PGA_scaffold9__2_contigs__length_6774 Writing cytosine report for not covered chromosome contig_1001_pilon__uns Writing cytosine report for not covered chromosome contig_1002_pilon__uns Writing cytosine report for not covered chromosome contig_1008_pilon__uns Writing cytosine report for not covered chromosome contig_1013_pilon__uns Writing cytosine report for not covered chromosome contig_1014_pilon__uns Writing cytosine report for not covered chromosome contig_1015_pilon__uns Writing cytosine report for not covered chromosome contig_1019_pilon__uns Writing cytosine report for not covered chromosome contig_1020_pilon__uns Writing cytosine report for not covered chromosome contig_1023_pilon__uns Writing cytosine report for not covered chromosome contig_1027_pilon__uns Writing cytosine report for not covered chromosome contig_102_pilon__uns Writing cytosine report for not covered chromosome contig_1031_pilon__uns Writing cytosine report for not covered chromosome contig_1036_pilon__uns Writing cytosine report for not covered chromosome contig_103_pilon__uns Writing cytosine report for not covered chromosome contig_1041_pilon__uns Writing cytosine report for not covered chromosome contig_1042_pilon__uns Writing cytosine report for not covered chromosome contig_1043_pilon__uns Writing cytosine report for not covered chromosome contig_1044_pilon__uns Writing cytosine report for not covered chromosome contig_1045_pilon__uns Writing cytosine report for not covered chromosome contig_1046_pilon__uns Writing cytosine report for not covered chromosome contig_1049_pilon__uns Writing cytosine report for not covered chromosome contig_1052_pilon__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1058_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1059_pilon__uns Writing cytosine report for not covered chromosome contig_1060_pilon__uns Writing cytosine report for not covered chromosome contig_1063_pilon__uns Writing cytosine report for not covered chromosome contig_106_pilon__uns Writing cytosine report for not covered chromosome contig_1070_pilon__uns Writing cytosine report for not covered chromosome contig_1089_pilon__uns Writing cytosine report for not covered chromosome contig_1091_pilon__uns Writing cytosine report for not covered chromosome contig_1094_pilon__uns Writing cytosine report for not covered chromosome contig_1098_pilon__uns Writing cytosine report for not covered chromosome contig_1114_pilon__uns Writing cytosine report for not covered chromosome contig_1117_pilon__uns Writing cytosine report for not covered chromosome contig_1118_pilon__uns Writing cytosine report for not covered chromosome contig_111_pilon__uns Writing cytosine report for not covered chromosome contig_1120_pilon__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1121_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1130_pilon__uns Writing cytosine report for not covered chromosome contig_1131_pilon__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1134_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1139_pilon__uns Writing cytosine report for not covered chromosome contig_1143_pilon__uns Writing cytosine report for not covered chromosome contig_1144_pilon__uns Writing cytosine report for not covered chromosome contig_1148_pilon__uns Writing cytosine report for not covered chromosome contig_1152_pilon__uns Writing cytosine report for not covered chromosome contig_1153_pilon__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1155_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1159_pilon__uns Writing cytosine report for not covered chromosome contig_117_pilon__uns Writing cytosine report for not covered chromosome contig_1180_pilon__uns Writing cytosine report for not covered chromosome contig_1183_pilon__uns Writing cytosine report for not covered chromosome contig_1184_pilon__uns Writing cytosine report for not covered chromosome contig_1200_pilon__uns Writing cytosine report for not covered chromosome contig_1203_pilon__uns Writing cytosine report for not covered chromosome contig_1206_pilon__uns Writing cytosine report for not covered chromosome contig_1207_pilon__uns Writing cytosine report for not covered chromosome contig_120_pilon__uns Writing cytosine report for not covered chromosome contig_1213_pilon__uns Writing cytosine report for not covered chromosome contig_1217_pilon__uns Writing cytosine report for not covered chromosome contig_121_pilon__uns Writing cytosine report for not covered chromosome contig_1223_pilon__uns Writing cytosine report for not covered chromosome contig_1225_pilon__uns Writing cytosine report for not covered chromosome contig_1226_pilon__uns Writing cytosine report for not covered chromosome contig_1229_pilon__uns Writing cytosine report for not covered chromosome contig_122_pilon__uns Writing cytosine report for not covered chromosome contig_1232_pilon__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1233_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1235_pilon__uns Writing cytosine report for not covered chromosome contig_1237_pilon__uns Writing cytosine report for not covered chromosome contig_1239_pilon__uns Writing cytosine report for not covered chromosome contig_1243_pilon__uns Writing cytosine report for not covered chromosome contig_1244_pilon__uns Writing cytosine report for not covered chromosome contig_1251_pilon__uns Writing cytosine report for not covered chromosome contig_1254_pilon__uns Writing cytosine report for not covered chromosome contig_1258_pilon__uns Writing cytosine report for not covered chromosome contig_1260_pilon__uns Writing cytosine report for not covered chromosome contig_126_pilon__uns Writing cytosine report for not covered chromosome contig_1271_pilon__uns Writing cytosine report for not covered chromosome contig_1274_pilon__uns Writing cytosine report for not covered chromosome contig_1276_pilon__uns Writing cytosine report for not covered chromosome contig_127_pilon__uns Writing cytosine report for not covered chromosome contig_1281_pilon__uns Writing cytosine report for not covered chromosome contig_1283_pilon__uns Writing cytosine report for not covered chromosome contig_128_pilon__uns Writing cytosine report for not covered chromosome contig_1291_pilon__uns Writing cytosine report for not covered chromosome contig_1293_pilon__uns Writing cytosine report for not covered chromosome contig_1301_pilon__uns Writing cytosine report for not covered chromosome contig_1303_pilon__uns Writing cytosine report for not covered chromosome contig_1304_pilon__uns Writing cytosine report for not covered chromosome contig_1307_pilon__uns Writing cytosine report for not covered chromosome contig_1308_pilon__uns Writing cytosine report for not covered chromosome contig_1315_pilon__uns Writing cytosine report for not covered chromosome contig_1318_pilon__uns Writing cytosine report for not covered chromosome contig_1325_pilon__uns Writing cytosine report for not covered chromosome contig_1329_pilon__uns Writing cytosine report for not covered chromosome contig_1330_pilon__uns Writing cytosine report for not covered chromosome contig_1338_pilon__uns Writing cytosine report for not covered chromosome contig_1339_pilon__uns Writing cytosine report for not covered chromosome contig_1340_pilon__uns Writing cytosine report for not covered chromosome contig_1342_pilon__uns Writing cytosine report for not covered chromosome contig_1352_pilon__uns Writing cytosine report for not covered chromosome contig_1353_pilon__uns Writing cytosine report for not covered chromosome contig_1367_pilon__uns Writing cytosine report for not covered chromosome contig_1368_pilon__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1372_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1374_pilon__uns Writing cytosine report for not covered chromosome contig_1386_pilon__uns Writing cytosine report for not covered chromosome contig_1387_pilon__uns Writing cytosine report for not covered chromosome contig_1395_pilon__uns Writing cytosine report for not covered chromosome contig_1398_pilon__uns Writing cytosine report for not covered chromosome contig_1409_pilon__uns Writing cytosine report for not covered chromosome contig_140_pilon__uns Writing cytosine report for not covered chromosome contig_1410_pilon__uns Writing cytosine report for not covered chromosome contig_1415_pilon__uns Writing cytosine report for not covered chromosome contig_1419_pilon__uns Writing cytosine report for not covered chromosome contig_1422_pilon__uns Writing cytosine report for not covered chromosome contig_1426_pilon__uns Writing cytosine report for not covered chromosome contig_1427_pilon__uns Writing cytosine report for not covered chromosome contig_142_pilon__uns Writing cytosine report for not covered chromosome contig_1434_pilon__uns Writing cytosine report for not covered chromosome contig_1438_pilon__uns Writing cytosine report for not covered chromosome contig_1442_pilon__uns Writing cytosine report for not covered chromosome contig_1445_pilon__uns Writing cytosine report for not covered chromosome contig_1451_pilon__uns Writing cytosine report for not covered chromosome contig_1452_pilon__uns Writing cytosine report for not covered chromosome contig_1454_pilon__uns Writing cytosine report for not covered chromosome contig_145_pilon__uns Writing cytosine report for not covered chromosome contig_1461_pilon__uns Writing cytosine report for not covered chromosome contig_146_pilon__uns Writing cytosine report for not covered chromosome contig_1472_pilon__uns Writing cytosine report for not covered chromosome contig_1473_pilon__uns Writing cytosine report for not covered chromosome contig_1484_pilon__uns Writing cytosine report for not covered chromosome contig_1488_pilon__uns Writing cytosine report for not covered chromosome contig_1493_pilon__uns Writing cytosine report for not covered chromosome contig_1497_pilon__uns Writing cytosine report for not covered chromosome contig_1498_pilon__uns Writing cytosine report for not covered chromosome contig_1502_pilon__uns Writing cytosine report for not covered chromosome contig_1511_pilon__uns Writing cytosine report for not covered chromosome contig_1512_pilon__uns Writing cytosine report for not covered chromosome contig_1513_pilon__uns Writing cytosine report for not covered chromosome contig_1517_pilon__uns Writing cytosine report for not covered chromosome contig_1522_pilon__uns Writing cytosine report for not covered chromosome contig_1523_pilon__uns Writing cytosine report for not covered chromosome contig_1528_pilon__uns Writing cytosine report for not covered chromosome contig_1530_pilon__uns Writing cytosine report for not covered chromosome contig_1537_pilon__uns Writing cytosine report for not covered chromosome contig_153_pilon__uns Writing cytosine report for not covered chromosome contig_1540_pilon__uns Writing cytosine report for not covered chromosome contig_1556_pilon__uns Writing cytosine report for not covered chromosome contig_155_pilon__uns Writing cytosine report for not covered chromosome contig_1566_pilon__uns Writing cytosine report for not covered chromosome contig_1571_pilon__uns Writing cytosine report for not covered chromosome contig_1599_pilon__uns Writing cytosine report for not covered chromosome contig_1600_pilon__uns Writing cytosine report for not covered chromosome contig_1609_pilon__uns Writing cytosine report for not covered chromosome contig_1611_pilon__uns Writing cytosine report for not covered chromosome contig_1616_pilon__uns Writing cytosine report for not covered chromosome contig_1620_pilon__uns Writing cytosine report for not covered chromosome contig_1628_pilon__uns Writing cytosine report for not covered chromosome contig_1638_pilon__uns Writing cytosine report for not covered chromosome contig_1643_pilon__uns Writing cytosine report for not covered chromosome contig_1645_pilon__uns Writing cytosine report for not covered chromosome contig_1646_pilon__uns Writing cytosine report for not covered chromosome contig_1650_pilon__uns Writing cytosine report for not covered chromosome contig_1652_pilon__uns Writing cytosine report for not covered chromosome contig_1663_pilon__uns Writing cytosine report for not covered chromosome contig_1664_pilon__uns Writing cytosine report for not covered chromosome contig_1668_pilon__uns Writing cytosine report for not covered chromosome contig_166_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1670_pilon__uns Writing cytosine report for not covered chromosome contig_1671_pilon__uns Writing cytosine report for not covered chromosome contig_1672_pilon__uns Writing cytosine report for not covered chromosome contig_1676_pilon__uns Writing cytosine report for not covered chromosome contig_1678_pilon__uns Writing cytosine report for not covered chromosome contig_1680_pilon__uns Writing cytosine report for not covered chromosome contig_1681_pilon__uns Writing cytosine report for not covered chromosome contig_1685_pilon__uns Writing cytosine report for not covered chromosome contig_1689_pilon__uns Writing cytosine report for not covered chromosome contig_1691_pilon__uns Writing cytosine report for not covered chromosome contig_1697_pilon__uns Writing cytosine report for not covered chromosome contig_1710_pilon__uns Writing cytosine report for not covered chromosome contig_1714_pilon__uns Writing cytosine report for not covered chromosome contig_1716_pilon__uns Writing cytosine report for not covered chromosome contig_1720_pilon__uns Writing cytosine report for not covered chromosome contig_1729_pilon__uns Writing cytosine report for not covered chromosome contig_172_pilon__uns Writing cytosine report for not covered chromosome contig_1730_pilon__uns Writing cytosine report for not covered chromosome contig_1733_pilon__uns Writing cytosine report for not covered chromosome contig_1734_pilon__uns Writing cytosine report for not covered chromosome contig_1737_pilon__uns Writing cytosine report for not covered chromosome contig_1739_pilon__uns Writing cytosine report for not covered chromosome contig_1740_pilon__uns Writing cytosine report for not covered chromosome contig_1742_pilon__uns Writing cytosine report for not covered chromosome contig_1743_pilon__uns Writing cytosine report for not covered chromosome contig_1744_pilon__uns Writing cytosine report for not covered chromosome contig_1745_pilon__uns Writing cytosine report for not covered chromosome contig_174_pilon__uns Writing cytosine report for not covered chromosome contig_1752_pilon__uns Writing cytosine report for not covered chromosome contig_1753_pilon__uns Writing cytosine report for not covered chromosome contig_1755_pilon__uns Writing cytosine report for not covered chromosome contig_1760_pilon__uns Writing cytosine report for not covered chromosome contig_1761_pilon__uns Writing cytosine report for not covered chromosome contig_1768_pilon__uns Writing cytosine report for not covered chromosome contig_176_pilon__uns Writing cytosine report for not covered chromosome contig_1770_pilon__uns Writing cytosine report for not covered chromosome contig_1772_pilon__uns Writing cytosine report for not covered chromosome contig_1773_pilon__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1780_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1781_pilon__uns Writing cytosine report for not covered chromosome contig_1787_pilon__uns Writing cytosine report for not covered chromosome contig_1789_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1795_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1801_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_180_pilon__uns Writing cytosine report for not covered chromosome contig_1811_pilon__uns Writing cytosine report for not covered chromosome contig_1815_pilon__uns Writing cytosine report for not covered chromosome contig_1816_pilon__uns Writing cytosine report for not covered chromosome contig_1819_pilon__uns Writing cytosine report for not covered chromosome contig_1829_pilon__uns Writing cytosine report for not covered chromosome contig_1830_pilon__uns Writing cytosine report for not covered chromosome contig_1834_pilon__uns Writing cytosine report for not covered chromosome contig_1835_pilon__uns Writing cytosine report for not covered chromosome contig_1839_pilon__uns Writing cytosine report for not covered chromosome contig_1840_pilon__uns Writing cytosine report for not covered chromosome contig_1846_pilon__uns Writing cytosine report for not covered chromosome contig_1858_pilon__uns Writing cytosine report for not covered chromosome contig_1864_pilon__uns Writing cytosine report for not covered chromosome contig_1868_pilon__uns Writing cytosine report for not covered chromosome contig_1869_pilon__uns Writing cytosine report for not covered chromosome contig_1870_pilon__uns Writing cytosine report for not covered chromosome contig_1875_pilon__uns Writing cytosine report for not covered chromosome contig_1877_pilon__uns Writing cytosine report for not covered chromosome contig_1878_pilon__uns Writing cytosine report for not covered chromosome contig_1881_pilon__uns Writing cytosine report for not covered chromosome contig_1888_pilon__uns Writing cytosine report for not covered chromosome contig_1896_pilon__uns Writing cytosine report for not covered chromosome contig_189_pilon__uns Writing cytosine report for not covered chromosome contig_1902_pilon__uns Writing cytosine report for not covered chromosome contig_1904_pilon__uns Writing cytosine report for not covered chromosome contig_1907_pilon__uns Writing cytosine report for not covered chromosome contig_1908_pilon__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_190_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1916_pilon__uns Writing cytosine report for not covered chromosome contig_1921_pilon__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1923_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1924_pilon__uns Writing cytosine report for not covered chromosome contig_1925_pilon__uns Writing cytosine report for not covered chromosome contig_1926_pilon__uns Writing cytosine report for not covered chromosome contig_1929_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_1931_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_1940_pilon__uns Writing cytosine report for not covered chromosome contig_1943_pilon__uns Writing cytosine report for not covered chromosome contig_1945_pilon__uns Writing cytosine report for not covered chromosome contig_1962_pilon__uns Writing cytosine report for not covered chromosome contig_1965_pilon__uns Writing cytosine report for not covered chromosome contig_1969_pilon__uns Writing cytosine report for not covered chromosome contig_1974_pilon__uns Writing cytosine report for not covered chromosome contig_1989_pilon__uns Writing cytosine report for not covered chromosome contig_1991_pilon__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_1993_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_1998_pilon__uns Writing cytosine report for not covered chromosome contig_199_pilon__uns Writing cytosine report for not covered chromosome contig_1_pilon__uns Writing cytosine report for not covered chromosome contig_2001_pilon__uns Writing cytosine report for not covered chromosome contig_2002_pilon__uns Writing cytosine report for not covered chromosome contig_2010_pilon__uns Writing cytosine report for not covered chromosome contig_2014_pilon__uns Writing cytosine report for not covered chromosome contig_203_pilon__uns Writing cytosine report for not covered chromosome contig_2049_pilon__uns Writing cytosine report for not covered chromosome contig_2057_pilon__uns Writing cytosine report for not covered chromosome contig_2060_pilon__uns Writing cytosine report for not covered chromosome contig_2068_pilon__uns Writing cytosine report for not covered chromosome contig_2069_pilon__uns Writing cytosine report for not covered chromosome contig_206_pilon__uns Writing cytosine report for not covered chromosome contig_2078_pilon__uns Writing cytosine report for not covered chromosome contig_2093_pilon__uns Writing cytosine report for not covered chromosome contig_2098_pilon__uns Writing cytosine report for not covered chromosome contig_2100_pilon__uns Writing cytosine report for not covered chromosome contig_2111_pilon__uns Writing cytosine report for not covered chromosome contig_2112_pilon__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_211_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2122_pilon__uns Writing cytosine report for not covered chromosome contig_2126_pilon__uns Writing cytosine report for not covered chromosome contig_2131_pilon__uns Writing cytosine report for not covered chromosome contig_2139_pilon__uns Writing cytosine report for not covered chromosome contig_2140_pilon__uns Writing cytosine report for not covered chromosome contig_2141_pilon__uns Writing cytosine report for not covered chromosome contig_2143_pilon__uns Writing cytosine report for not covered chromosome contig_2149_pilon__uns Writing cytosine report for not covered chromosome contig_2153_pilon__uns Writing cytosine report for not covered chromosome contig_2164_pilon__uns Writing cytosine report for not covered chromosome contig_2165_pilon__uns Writing cytosine report for not covered chromosome contig_2167_pilon__uns Writing cytosine report for not covered chromosome contig_2168_pilon__uns Writing cytosine report for not covered chromosome contig_2176_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_217_pilon__uns Writing cytosine report for not covered chromosome contig_2180_pilon__uns Writing cytosine report for not covered chromosome contig_2182_pilon__uns Writing cytosine report for not covered chromosome contig_218_pilon__uns Writing cytosine report for not covered chromosome contig_2192_pilon__uns Writing cytosine report for not covered chromosome contig_2194_pilon__uns Writing cytosine report for not covered chromosome contig_2198_pilon__uns Writing cytosine report for not covered chromosome contig_2200_pilon__uns Writing cytosine report for not covered chromosome contig_2201_pilon__uns Writing cytosine report for not covered chromosome contig_2207_pilon__uns Writing cytosine report for not covered chromosome contig_2209_pilon__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_220_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2213_pilon__uns Writing cytosine report for not covered chromosome contig_2215_pilon__uns Writing cytosine report for not covered chromosome contig_2216_pilon__uns Writing cytosine report for not covered chromosome contig_2236_pilon__uns Writing cytosine report for not covered chromosome contig_2238_pilon__uns Writing cytosine report for not covered chromosome contig_223_pilon__uns Writing cytosine report for not covered chromosome contig_2240_pilon__uns Writing cytosine report for not covered chromosome contig_2242_pilon__uns Writing cytosine report for not covered chromosome contig_2245_pilon__uns Writing cytosine report for not covered chromosome contig_2247_pilon__uns Writing cytosine report for not covered chromosome contig_2248_pilon__uns Writing cytosine report for not covered chromosome contig_2249_pilon__uns Writing cytosine report for not covered chromosome contig_2250_pilon__uns Writing cytosine report for not covered chromosome contig_2251_pilon__uns Writing cytosine report for not covered chromosome contig_2253_pilon__uns Writing cytosine report for not covered chromosome contig_2254_pilon__uns Writing cytosine report for not covered chromosome contig_2255_pilon__uns Writing cytosine report for not covered chromosome contig_2259_pilon__uns Writing cytosine report for not covered chromosome contig_225_pilon__uns Writing cytosine report for not covered chromosome contig_2260_pilon__uns Writing cytosine report for not covered chromosome contig_2262_pilon__uns Writing cytosine report for not covered chromosome contig_2265_pilon__uns Writing cytosine report for not covered chromosome contig_2271_pilon__uns Writing cytosine report for not covered chromosome contig_2274_pilon__uns Writing cytosine report for not covered chromosome contig_2278_pilon__uns Writing cytosine report for not covered chromosome contig_2280_pilon__uns Writing cytosine report for not covered chromosome contig_2281_pilon__uns Writing cytosine report for not covered chromosome contig_2284_pilon__uns Writing cytosine report for not covered chromosome contig_2288_pilon__uns Writing cytosine report for not covered chromosome contig_2289_pilon__uns Writing cytosine report for not covered chromosome contig_2290_pilon__uns Writing cytosine report for not covered chromosome contig_2291_pilon__uns Writing cytosine report for not covered chromosome contig_2292_pilon__uns Writing cytosine report for not covered chromosome contig_2294_pilon__uns Writing cytosine report for not covered chromosome contig_2296_pilon__uns Writing cytosine report for not covered chromosome contig_2297_pilon__uns Writing cytosine report for not covered chromosome contig_2299_pilon__uns Writing cytosine report for not covered chromosome contig_2302_pilon__uns Writing cytosine report for not covered chromosome contig_2304_pilon__uns Writing cytosine report for not covered chromosome contig_2306_pilon__uns Writing cytosine report for not covered chromosome contig_2309_pilon__uns Writing cytosine report for not covered chromosome contig_2311_pilon__uns Writing cytosine report for not covered chromosome contig_2312_pilon__uns Writing cytosine report for not covered chromosome contig_2313_pilon__uns Writing cytosine report for not covered chromosome contig_2316_pilon__uns Writing cytosine report for not covered chromosome contig_2317_pilon__uns Writing cytosine report for not covered chromosome contig_2318_pilon__uns Writing cytosine report for not covered chromosome contig_2320_pilon__uns Writing cytosine report for not covered chromosome contig_2321_pilon__uns Writing cytosine report for not covered chromosome contig_2325_pilon__uns Writing cytosine report for not covered chromosome contig_2326_pilon__uns Writing cytosine report for not covered chromosome contig_2333_pilon__uns Writing cytosine report for not covered chromosome contig_2334_pilon__uns Writing cytosine report for not covered chromosome contig_2336_pilon__uns Writing cytosine report for not covered chromosome contig_2337_pilon__uns Writing cytosine report for not covered chromosome contig_2339_pilon__uns Writing cytosine report for not covered chromosome contig_233_pilon__uns Writing cytosine report for not covered chromosome contig_2341_pilon__uns Writing cytosine report for not covered chromosome contig_2344_pilon__uns Writing cytosine report for not covered chromosome contig_2345_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2347_pilon__uns Writing cytosine report for not covered chromosome contig_234_pilon__uns Writing cytosine report for not covered chromosome contig_2354_pilon__uns Writing cytosine report for not covered chromosome contig_2355_pilon__uns Writing cytosine report for not covered chromosome contig_2357_pilon__uns Writing cytosine report for not covered chromosome contig_2358_pilon__uns Writing cytosine report for not covered chromosome contig_235_pilon__uns Writing cytosine report for not covered chromosome contig_2360_pilon__uns Writing cytosine report for not covered chromosome contig_2362_pilon__uns Writing cytosine report for not covered chromosome contig_2363_pilon__uns Writing cytosine report for not covered chromosome contig_2364_pilon__uns Writing cytosine report for not covered chromosome contig_2365_pilon__uns Writing cytosine report for not covered chromosome contig_2367_pilon__uns Writing cytosine report for not covered chromosome contig_2368_pilon__uns Writing cytosine report for not covered chromosome contig_2369_pilon__uns Writing cytosine report for not covered chromosome contig_236_pilon__uns Writing cytosine report for not covered chromosome contig_2370_pilon__uns Writing cytosine report for not covered chromosome contig_2376_pilon__uns Writing cytosine report for not covered chromosome contig_2377_pilon__uns Writing cytosine report for not covered chromosome contig_2378_pilon__uns Writing cytosine report for not covered chromosome contig_2388_pilon__uns Writing cytosine report for not covered chromosome contig_238_pilon__uns Writing cytosine report for not covered chromosome contig_2390_pilon__uns Writing cytosine report for not covered chromosome contig_2391_pilon__uns Writing cytosine report for not covered chromosome contig_2399_pilon__uns Writing cytosine report for not covered chromosome contig_239_pilon__uns Writing cytosine report for not covered chromosome contig_23_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2401_pilon__uns Writing cytosine report for not covered chromosome contig_2402_pilon__uns Writing cytosine report for not covered chromosome contig_2405_pilon__uns Writing cytosine report for not covered chromosome contig_2409_pilon__uns Writing cytosine report for not covered chromosome contig_2411_pilon__uns Writing cytosine report for not covered chromosome contig_2416_pilon__uns Writing cytosine report for not covered chromosome contig_2417_pilon__uns Writing cytosine report for not covered chromosome contig_2418_pilon__uns Writing cytosine report for not covered chromosome contig_2421_pilon__uns Writing cytosine report for not covered chromosome contig_2423_pilon__uns Writing cytosine report for not covered chromosome contig_2427_pilon__uns Writing cytosine report for not covered chromosome contig_2430_pilon__uns Writing cytosine report for not covered chromosome contig_2433_pilon__uns Writing cytosine report for not covered chromosome contig_2434_pilon__uns Writing cytosine report for not covered chromosome contig_2435_pilon__uns Writing cytosine report for not covered chromosome contig_2439_pilon__uns Writing cytosine report for not covered chromosome contig_2440_pilon__uns Writing cytosine report for not covered chromosome contig_2443_pilon__uns Writing cytosine report for not covered chromosome contig_2444_pilon__uns Writing cytosine report for not covered chromosome contig_2446_pilon__uns Writing cytosine report for not covered chromosome contig_2449_pilon__uns Writing cytosine report for not covered chromosome contig_244_pilon__uns Writing cytosine report for not covered chromosome contig_2455_pilon__uns Writing cytosine report for not covered chromosome contig_2456_pilon__uns Writing cytosine report for not covered chromosome contig_2457_pilon__uns Writing cytosine report for not covered chromosome contig_2459_pilon__uns Writing cytosine report for not covered chromosome contig_2462_pilon__uns Writing cytosine report for not covered chromosome contig_2463_pilon__uns Writing cytosine report for not covered chromosome contig_2466_pilon__uns Writing cytosine report for not covered chromosome contig_2469_pilon__uns Writing cytosine report for not covered chromosome contig_2471_pilon__uns Writing cytosine report for not covered chromosome contig_2473_pilon__uns Writing cytosine report for not covered chromosome contig_2475_pilon__uns Writing cytosine report for not covered chromosome contig_2476_pilon__uns Writing cytosine report for not covered chromosome contig_2477_pilon__uns Writing cytosine report for not covered chromosome contig_247_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2480_pilon__uns Writing cytosine report for not covered chromosome contig_2484_pilon__uns Writing cytosine report for not covered chromosome contig_2486_pilon__uns Writing cytosine report for not covered chromosome contig_2487_pilon__uns Writing cytosine report for not covered chromosome contig_2490_pilon__uns Writing cytosine report for not covered chromosome contig_2491_pilon__uns Writing cytosine report for not covered chromosome contig_2492_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2494_pilon__uns Writing cytosine report for not covered chromosome contig_2497_pilon__uns Writing cytosine report for not covered chromosome contig_2499_pilon__uns Writing cytosine report for not covered chromosome contig_2500_pilon__uns Writing cytosine report for not covered chromosome contig_2503_pilon__uns Writing cytosine report for not covered chromosome contig_2507_pilon__uns Writing cytosine report for not covered chromosome contig_2509_pilon__uns Writing cytosine report for not covered chromosome contig_2510_pilon__uns Writing cytosine report for not covered chromosome contig_2513_pilon__uns Writing cytosine report for not covered chromosome contig_2515_pilon__uns Writing cytosine report for not covered chromosome contig_2517_pilon__uns Writing cytosine report for not covered chromosome contig_2518_pilon__uns Writing cytosine report for not covered chromosome contig_2519_pilon__uns Writing cytosine report for not covered chromosome contig_251_pilon__uns Writing cytosine report for not covered chromosome contig_2520_pilon__uns Writing cytosine report for not covered chromosome contig_252_pilon__uns Writing cytosine report for not covered chromosome contig_2533_pilon__uns Writing cytosine report for not covered chromosome contig_2535_pilon__uns Writing cytosine report for not covered chromosome contig_2536_pilon__uns Writing cytosine report for not covered chromosome contig_2539_pilon__uns Writing cytosine report for not covered chromosome contig_2540_pilon__uns Writing cytosine report for not covered chromosome contig_2544_pilon__uns Writing cytosine report for not covered chromosome contig_2549_pilon__uns Writing cytosine report for not covered chromosome contig_2550_pilon__uns Writing cytosine report for not covered chromosome contig_2551_pilon__uns Writing cytosine report for not covered chromosome contig_2552_pilon__uns Writing cytosine report for not covered chromosome contig_2555_pilon__uns Writing cytosine report for not covered chromosome contig_2560_pilon__uns Writing cytosine report for not covered chromosome contig_2563_pilon__uns Writing cytosine report for not covered chromosome contig_2564_pilon__uns Writing cytosine report for not covered chromosome contig_2565_pilon__uns Writing cytosine report for not covered chromosome contig_2566_pilon__uns Writing cytosine report for not covered chromosome contig_2569_pilon__uns Writing cytosine report for not covered chromosome contig_256_pilon__uns Writing cytosine report for not covered chromosome contig_2570_pilon__uns Writing cytosine report for not covered chromosome contig_2572_pilon__uns Writing cytosine report for not covered chromosome contig_2574_pilon__uns Writing cytosine report for not covered chromosome contig_2587_pilon__uns Writing cytosine report for not covered chromosome contig_2588_pilon__uns Writing cytosine report for not covered chromosome contig_2594_pilon__uns Writing cytosine report for not covered chromosome contig_2595_pilon__uns Writing cytosine report for not covered chromosome contig_2596_pilon__uns Writing cytosine report for not covered chromosome contig_2598_pilon__uns Writing cytosine report for not covered chromosome contig_2600_pilon__uns Writing cytosine report for not covered chromosome contig_2607_pilon__uns Writing cytosine report for not covered chromosome contig_2608_pilon__uns Writing cytosine report for not covered chromosome contig_2609_pilon__uns Writing cytosine report for not covered chromosome contig_260_pilon__uns Writing cytosine report for not covered chromosome contig_2610_pilon__uns Writing cytosine report for not covered chromosome contig_2612_pilon__uns Writing cytosine report for not covered chromosome contig_2613_pilon__uns Writing cytosine report for not covered chromosome contig_2614_pilon__uns Writing cytosine report for not covered chromosome contig_2617_pilon__uns Writing cytosine report for not covered chromosome contig_2618_pilon__uns Writing cytosine report for not covered chromosome contig_2619_pilon__uns Writing cytosine report for not covered chromosome contig_2620_pilon__uns Writing cytosine report for not covered chromosome contig_2627_pilon__uns Writing cytosine report for not covered chromosome contig_2628_pilon__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2629_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_262_pilon__uns Writing cytosine report for not covered chromosome contig_2630_pilon__uns Writing cytosine report for not covered chromosome contig_2637_pilon__uns Writing cytosine report for not covered chromosome contig_2639_pilon__uns Writing cytosine report for not covered chromosome contig_2641_pilon__uns Writing cytosine report for not covered chromosome contig_2642_pilon__uns Writing cytosine report for not covered chromosome contig_2646_pilon__uns Writing cytosine report for not covered chromosome contig_2650_pilon__uns Writing cytosine report for not covered chromosome contig_2651_pilon__uns Writing cytosine report for not covered chromosome contig_2653_pilon__uns Writing cytosine report for not covered chromosome contig_2654_pilon__uns Writing cytosine report for not covered chromosome contig_2656_pilon__uns Writing cytosine report for not covered chromosome contig_2657_pilon__uns Writing cytosine report for not covered chromosome contig_2663_pilon__uns Writing cytosine report for not covered chromosome contig_2664_pilon__uns Writing cytosine report for not covered chromosome contig_2666_pilon__uns Writing cytosine report for not covered chromosome contig_2667_pilon__uns Writing cytosine report for not covered chromosome contig_2669_pilon__uns Writing cytosine report for not covered chromosome contig_266_pilon__uns Writing cytosine report for not covered chromosome contig_2670_pilon__uns Writing cytosine report for not covered chromosome contig_2671_pilon__uns Writing cytosine report for not covered chromosome contig_2672_pilon__uns Writing cytosine report for not covered chromosome contig_2676_pilon__uns Writing cytosine report for not covered chromosome contig_2677_pilon__uns Writing cytosine report for not covered chromosome contig_2678_pilon__uns Writing cytosine report for not covered chromosome contig_2679_pilon__uns Writing cytosine report for not covered chromosome contig_2683_pilon__uns Writing cytosine report for not covered chromosome contig_2687_pilon__uns Writing cytosine report for not covered chromosome contig_268_pilon__uns Writing cytosine report for not covered chromosome contig_2694_pilon__uns Writing cytosine report for not covered chromosome contig_2695_pilon__uns Writing cytosine report for not covered chromosome contig_269_pilon__uns Writing cytosine report for not covered chromosome contig_2702_pilon__uns Writing cytosine report for not covered chromosome contig_2706_pilon__uns Writing cytosine report for not covered chromosome contig_2708_pilon__uns Writing cytosine report for not covered chromosome contig_2710_pilon__uns Writing cytosine report for not covered chromosome contig_2714_pilon__uns Writing cytosine report for not covered chromosome contig_2718_pilon__uns Writing cytosine report for not covered chromosome contig_2719_pilon__uns Writing cytosine report for not covered chromosome contig_2722_pilon__uns Writing cytosine report for not covered chromosome contig_2724_pilon__uns Writing cytosine report for not covered chromosome contig_2727_pilon__uns Writing cytosine report for not covered chromosome contig_2730_pilon__uns Writing cytosine report for not covered chromosome contig_2732_pilon__uns Writing cytosine report for not covered chromosome contig_2735_pilon__uns Writing cytosine report for not covered chromosome contig_2736_pilon__uns Writing cytosine report for not covered chromosome contig_2738_pilon__uns Writing cytosine report for not covered chromosome contig_2740_pilon__uns Writing cytosine report for not covered chromosome contig_2745_pilon__uns Writing cytosine report for not covered chromosome contig_2747_pilon__uns Writing cytosine report for not covered chromosome contig_2750_pilon__uns Writing cytosine report for not covered chromosome contig_2751_pilon__uns Writing cytosine report for not covered chromosome contig_2753_pilon__uns Writing cytosine report for not covered chromosome contig_2758_pilon__uns Writing cytosine report for not covered chromosome contig_2760_pilon__uns Writing cytosine report for not covered chromosome contig_2765_pilon__uns Writing cytosine report for not covered chromosome contig_2766_pilon__uns Writing cytosine report for not covered chromosome contig_2767_pilon__uns Writing cytosine report for not covered chromosome contig_2771_pilon__uns Writing cytosine report for not covered chromosome contig_2773_pilon__uns Writing cytosine report for not covered chromosome contig_2775_pilon__uns Writing cytosine report for not covered chromosome contig_2777_pilon__uns Writing cytosine report for not covered chromosome contig_2778_pilon__uns Writing cytosine report for not covered chromosome contig_2779_pilon__uns Writing cytosine report for not covered chromosome contig_2782_pilon__uns Writing cytosine report for not covered chromosome contig_2787_pilon__uns Writing cytosine report for not covered chromosome contig_2788_pilon__uns Writing cytosine report for not covered chromosome contig_2791_pilon__uns Writing cytosine report for not covered chromosome contig_2792_pilon__uns Writing cytosine report for not covered chromosome contig_2811_pilon__uns Writing cytosine report for not covered chromosome contig_2815_pilon__uns Writing cytosine report for not covered chromosome contig_2816_pilon__uns Writing cytosine report for not covered chromosome contig_2817_pilon__uns Writing cytosine report for not covered chromosome contig_2819_pilon__uns Writing cytosine report for not covered chromosome contig_2820_pilon__uns Writing cytosine report for not covered chromosome contig_2822_pilon__uns Writing cytosine report for not covered chromosome contig_2823_pilon__uns Writing cytosine report for not covered chromosome contig_2824_pilon__uns Writing cytosine report for not covered chromosome contig_2828_pilon__uns Writing cytosine report for not covered chromosome contig_2829_pilon__uns Writing cytosine report for not covered chromosome contig_2830_pilon__uns Writing cytosine report for not covered chromosome contig_2832_pilon__uns Writing cytosine report for not covered chromosome contig_2834_pilon__uns Writing cytosine report for not covered chromosome contig_2835_pilon__uns Writing cytosine report for not covered chromosome contig_2836_pilon__uns Writing cytosine report for not covered chromosome contig_2838_pilon__uns Writing cytosine report for not covered chromosome contig_2840_pilon__uns Writing cytosine report for not covered chromosome contig_2841_pilon__uns Writing cytosine report for not covered chromosome contig_2846_pilon__uns Writing cytosine report for not covered chromosome contig_2851_pilon__uns Writing cytosine report for not covered chromosome contig_2856_pilon__uns Writing cytosine report for not covered chromosome contig_2857_pilon__uns Writing cytosine report for not covered chromosome contig_2858_pilon__uns Writing cytosine report for not covered chromosome contig_2859_pilon__uns Writing cytosine report for not covered chromosome contig_2861_pilon__uns Writing cytosine report for not covered chromosome contig_2865_pilon__uns Writing cytosine report for not covered chromosome contig_2867_pilon__uns Writing cytosine report for not covered chromosome contig_2872_pilon__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_2874_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_2875_pilon__uns Writing cytosine report for not covered chromosome contig_2878_pilon__uns Writing cytosine report for not covered chromosome contig_2881_pilon__uns Writing cytosine report for not covered chromosome contig_2882_pilon__uns Writing cytosine report for not covered chromosome contig_2883_pilon__uns Writing cytosine report for not covered chromosome contig_2884_pilon__uns Writing cytosine report for not covered chromosome contig_2885_pilon__uns Writing cytosine report for not covered chromosome contig_2886_pilon__uns Writing cytosine report for not covered chromosome contig_2889_pilon__uns Writing cytosine report for not covered chromosome contig_288_pilon__uns Writing cytosine report for not covered chromosome contig_2894_pilon__uns Writing cytosine report for not covered chromosome contig_2895_pilon__uns Writing cytosine report for not covered chromosome contig_2896_pilon__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_289_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_2900_pilon__uns Writing cytosine report for not covered chromosome contig_2901_pilon__uns Writing cytosine report for not covered chromosome contig_2905_pilon__uns Writing cytosine report for not covered chromosome contig_2906_pilon__uns Writing cytosine report for not covered chromosome contig_2909_pilon__uns Writing cytosine report for not covered chromosome contig_2911_pilon__uns Writing cytosine report for not covered chromosome contig_2920_pilon__uns Writing cytosine report for not covered chromosome contig_2921_pilon__uns Writing cytosine report for not covered chromosome contig_2922_pilon__uns Writing cytosine report for not covered chromosome contig_2923_pilon__uns Writing cytosine report for not covered chromosome contig_2924_pilon__uns Writing cytosine report for not covered chromosome contig_2926_pilon__uns Writing cytosine report for not covered chromosome contig_2927_pilon__uns Writing cytosine report for not covered chromosome contig_2928_pilon__uns Writing cytosine report for not covered chromosome contig_2929_pilon__uns Writing cytosine report for not covered chromosome contig_2932_pilon__uns Writing cytosine report for not covered chromosome contig_2934_pilon__uns Writing cytosine report for not covered chromosome contig_2935_pilon__uns Writing cytosine report for not covered chromosome contig_2936_pilon__uns Writing cytosine report for not covered chromosome contig_2940_pilon__uns Writing cytosine report for not covered chromosome contig_2941_pilon__uns Writing cytosine report for not covered chromosome contig_2942_pilon__uns Writing cytosine report for not covered chromosome contig_2943_pilon__uns Writing cytosine report for not covered chromosome contig_2946_pilon__uns Writing cytosine report for not covered chromosome contig_2948_pilon__uns Writing cytosine report for not covered chromosome contig_294_pilon__uns Writing cytosine report for not covered chromosome contig_2951_pilon__uns Writing cytosine report for not covered chromosome contig_2952_pilon__uns Writing cytosine report for not covered chromosome contig_2953_pilon__uns Writing cytosine report for not covered chromosome contig_2954_pilon__uns Writing cytosine report for not covered chromosome contig_2955_pilon__uns Writing cytosine report for not covered chromosome contig_2960_pilon__uns Writing cytosine report for not covered chromosome contig_2962_pilon__uns Writing cytosine report for not covered chromosome contig_2965_pilon__uns Writing cytosine report for not covered chromosome contig_2966_pilon__uns Writing cytosine report for not covered chromosome contig_2967_pilon__uns Writing cytosine report for not covered chromosome contig_2969_pilon__uns Writing cytosine report for not covered chromosome contig_2970_pilon__uns Writing cytosine report for not covered chromosome contig_2973_pilon__uns Writing cytosine report for not covered chromosome contig_2976_pilon__uns Writing cytosine report for not covered chromosome contig_2978_pilon__uns Writing cytosine report for not covered chromosome contig_2980_pilon__uns Writing cytosine report for not covered chromosome contig_2983_pilon__uns Writing cytosine report for not covered chromosome contig_2984_pilon__uns Writing cytosine report for not covered chromosome contig_2987_pilon__uns Writing cytosine report for not covered chromosome contig_2994_pilon__uns Writing cytosine report for not covered chromosome contig_2997_pilon__uns Writing cytosine report for not covered chromosome contig_2999_pilon__uns Writing cytosine report for not covered chromosome contig_3000_pilon__uns Writing cytosine report for not covered chromosome contig_3001_pilon__uns Writing cytosine report for not covered chromosome contig_3002_pilon__uns Writing cytosine report for not covered chromosome contig_3003_pilon__uns Writing cytosine report for not covered chromosome contig_3004_pilon__uns Writing cytosine report for not covered chromosome contig_3009_pilon__uns Writing cytosine report for not covered chromosome contig_3010_pilon__uns Writing cytosine report for not covered chromosome contig_3013_pilon__uns Writing cytosine report for not covered chromosome contig_3015_pilon__uns Writing cytosine report for not covered chromosome contig_3017_pilon__uns Writing cytosine report for not covered chromosome contig_3019_pilon__uns Writing cytosine report for not covered chromosome contig_3020_pilon__uns Writing cytosine report for not covered chromosome contig_3022_pilon__uns Writing cytosine report for not covered chromosome contig_3024_pilon__uns Writing cytosine report for not covered chromosome contig_3025_pilon__uns Writing cytosine report for not covered chromosome contig_3026_pilon__uns Writing cytosine report for not covered chromosome contig_3027_pilon__uns Writing cytosine report for not covered chromosome contig_3028_pilon__uns Writing cytosine report for not covered chromosome contig_3032_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3036_pilon__uns Writing cytosine report for not covered chromosome contig_3040_pilon__uns Writing cytosine report for not covered chromosome contig_3041_pilon__uns Writing cytosine report for not covered chromosome contig_3043_pilon__uns Writing cytosine report for not covered chromosome contig_3044_pilon__uns Writing cytosine report for not covered chromosome contig_3047_pilon__uns Writing cytosine report for not covered chromosome contig_3055_pilon__uns Writing cytosine report for not covered chromosome contig_3058_pilon__uns Writing cytosine report for not covered chromosome contig_3061_pilon__uns Writing cytosine report for not covered chromosome contig_3064_pilon__uns Writing cytosine report for not covered chromosome contig_3068_pilon__uns Writing cytosine report for not covered chromosome contig_3070_pilon__uns Writing cytosine report for not covered chromosome contig_3072_pilon__uns Writing cytosine report for not covered chromosome contig_3073_pilon__uns Writing cytosine report for not covered chromosome contig_3074_pilon__uns Writing cytosine report for not covered chromosome contig_3079_pilon__uns Writing cytosine report for not covered chromosome contig_3086_pilon__uns Writing cytosine report for not covered chromosome contig_3087_pilon__uns Writing cytosine report for not covered chromosome contig_3090_pilon__uns Writing cytosine report for not covered chromosome contig_3093_pilon__uns Writing cytosine report for not covered chromosome contig_3102_pilon__uns Writing cytosine report for not covered chromosome contig_3103_pilon__uns Writing cytosine report for not covered chromosome contig_3104_pilon__uns Writing cytosine report for not covered chromosome contig_3106_pilon__uns Writing cytosine report for not covered chromosome contig_310_pilon__uns Writing cytosine report for not covered chromosome contig_3112_pilon__uns Writing cytosine report for not covered chromosome contig_3113_pilon__uns Writing cytosine report for not covered chromosome contig_3126_pilon__uns Writing cytosine report for not covered chromosome contig_3127_pilon__uns Writing cytosine report for not covered chromosome contig_312_pilon__uns Writing cytosine report for not covered chromosome contig_3130_pilon__uns Writing cytosine report for not covered chromosome contig_3133_pilon__uns Writing cytosine report for not covered chromosome contig_3138_pilon__uns Writing cytosine report for not covered chromosome contig_3141_pilon__uns Writing cytosine report for not covered chromosome contig_3142_pilon__uns Writing cytosine report for not covered chromosome contig_3144_pilon__uns Writing cytosine report for not covered chromosome contig_3146_pilon__uns Writing cytosine report for not covered chromosome contig_3147_pilon__uns Writing cytosine report for not covered chromosome contig_3150_pilon__uns Writing cytosine report for not covered chromosome contig_3151_pilon__uns Writing cytosine report for not covered chromosome contig_3153_pilon__uns Writing cytosine report for not covered chromosome contig_3155_pilon__uns Writing cytosine report for not covered chromosome contig_3156_pilon__uns Writing cytosine report for not covered chromosome contig_3160_pilon__uns Writing cytosine report for not covered chromosome contig_3161_pilon__uns Writing cytosine report for not covered chromosome contig_3163_pilon__uns Writing cytosine report for not covered chromosome contig_3166_pilon__uns Writing cytosine report for not covered chromosome contig_3169_pilon__uns Writing cytosine report for not covered chromosome contig_3172_pilon__uns Writing cytosine report for not covered chromosome contig_3173_pilon__uns Writing cytosine report for not covered chromosome contig_3177_pilon__uns Writing cytosine report for not covered chromosome contig_3180_pilon__uns Writing cytosine report for not covered chromosome contig_3181_pilon__uns Writing cytosine report for not covered chromosome contig_3185_pilon__uns Writing cytosine report for not covered chromosome contig_3186_pilon__uns Writing cytosine report for not covered chromosome contig_3190_pilon__uns Writing cytosine report for not covered chromosome contig_3192_pilon__uns Writing cytosine report for not covered chromosome contig_3194_pilon__uns Writing cytosine report for not covered chromosome contig_3197_pilon__uns Writing cytosine report for not covered chromosome contig_3199_pilon__uns Writing cytosine report for not covered chromosome contig_31_pilon__uns Writing cytosine report for not covered chromosome contig_3200_pilon__uns Writing cytosine report for not covered chromosome contig_3201_pilon__uns Writing cytosine report for not covered chromosome contig_3203_pilon__uns Writing cytosine report for not covered chromosome contig_3204_pilon__uns Writing cytosine report for not covered chromosome contig_3209_pilon__uns Writing cytosine report for not covered chromosome contig_320_pilon__uns Writing cytosine report for not covered chromosome contig_3211_pilon__uns Writing cytosine report for not covered chromosome contig_3212_pilon__uns Writing cytosine report for not covered chromosome contig_3213_pilon__uns Writing cytosine report for not covered chromosome contig_3220_pilon__uns Writing cytosine report for not covered chromosome contig_3223_pilon__uns Writing cytosine report for not covered chromosome contig_3225_pilon__uns Writing cytosine report for not covered chromosome contig_3228_pilon__uns Writing cytosine report for not covered chromosome contig_3230_pilon__uns Writing cytosine report for not covered chromosome contig_3231_pilon__uns Writing cytosine report for not covered chromosome contig_3232_pilon__uns Writing cytosine report for not covered chromosome contig_3235_pilon__uns Writing cytosine report for not covered chromosome contig_3243_pilon__uns Writing cytosine report for not covered chromosome contig_3244_pilon__uns Writing cytosine report for not covered chromosome contig_3249_pilon__uns Writing cytosine report for not covered chromosome contig_3251_pilon__uns Writing cytosine report for not covered chromosome contig_3252_pilon__uns Writing cytosine report for not covered chromosome contig_3254_pilon__uns Writing cytosine report for not covered chromosome contig_3257_pilon__uns Writing cytosine report for not covered chromosome contig_3258_pilon__uns Writing cytosine report for not covered chromosome contig_3259_pilon__uns Writing cytosine report for not covered chromosome contig_3260_pilon__uns Writing cytosine report for not covered chromosome contig_3261_pilon__uns Writing cytosine report for not covered chromosome contig_3262_pilon__uns Writing cytosine report for not covered chromosome contig_3266_pilon__uns Writing cytosine report for not covered chromosome contig_3269_pilon__uns Writing cytosine report for not covered chromosome contig_3284_pilon__uns Writing cytosine report for not covered chromosome contig_3285_pilon__uns Writing cytosine report for not covered chromosome contig_3295_pilon__uns Writing cytosine report for not covered chromosome contig_3298_pilon__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_32_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3301_pilon__uns Writing cytosine report for not covered chromosome contig_3302_pilon__uns Writing cytosine report for not covered chromosome contig_3305_pilon__uns Writing cytosine report for not covered chromosome contig_3306_pilon__uns Writing cytosine report for not covered chromosome contig_3307_pilon__uns Writing cytosine report for not covered chromosome contig_3311_pilon__uns Writing cytosine report for not covered chromosome contig_3317_pilon__uns Writing cytosine report for not covered chromosome contig_3318_pilon__uns Writing cytosine report for not covered chromosome contig_3319_pilon__uns Writing cytosine report for not covered chromosome contig_331_pilon__uns Writing cytosine report for not covered chromosome contig_3323_pilon__uns Writing cytosine report for not covered chromosome contig_3326_pilon__uns Writing cytosine report for not covered chromosome contig_3327_pilon__uns Writing cytosine report for not covered chromosome contig_3331_pilon__uns Writing cytosine report for not covered chromosome contig_3339_pilon__uns Writing cytosine report for not covered chromosome contig_3342_pilon__uns Writing cytosine report for not covered chromosome contig_3343_pilon__uns Writing cytosine report for not covered chromosome contig_3344_pilon__uns Writing cytosine report for not covered chromosome contig_3346_pilon__uns Writing cytosine report for not covered chromosome contig_3347_pilon__uns Writing cytosine report for not covered chromosome contig_3348_pilon__uns Writing cytosine report for not covered chromosome contig_334_pilon__uns Writing cytosine report for not covered chromosome contig_3352_pilon__uns Writing cytosine report for not covered chromosome contig_3353_pilon__uns Writing cytosine report for not covered chromosome contig_3354_pilon__uns Writing cytosine report for not covered chromosome contig_3355_pilon__uns Writing cytosine report for not covered chromosome contig_3358_pilon__uns Writing cytosine report for not covered chromosome contig_3360_pilon__uns Writing cytosine report for not covered chromosome contig_3361_pilon__uns Writing cytosine report for not covered chromosome contig_3363_pilon__uns Writing cytosine report for not covered chromosome contig_3367_pilon__uns Writing cytosine report for not covered chromosome contig_3369_pilon__uns Writing cytosine report for not covered chromosome contig_336_pilon__uns Writing cytosine report for not covered chromosome contig_3372_pilon__uns Writing cytosine report for not covered chromosome contig_3373_pilon__uns Writing cytosine report for not covered chromosome contig_3384_pilon__uns Writing cytosine report for not covered chromosome contig_3389_pilon__uns Writing cytosine report for not covered chromosome contig_338_pilon__uns Writing cytosine report for not covered chromosome contig_3392_pilon__uns Writing cytosine report for not covered chromosome contig_3396_pilon__uns Writing cytosine report for not covered chromosome contig_3399_pilon__uns Writing cytosine report for not covered chromosome contig_3400_pilon__uns Writing cytosine report for not covered chromosome contig_3402_pilon__uns Writing cytosine report for not covered chromosome contig_3405_pilon__uns Writing cytosine report for not covered chromosome contig_3406_pilon__uns Writing cytosine report for not covered chromosome contig_3407_pilon__uns Writing cytosine report for not covered chromosome contig_3408_pilon__uns Writing cytosine report for not covered chromosome contig_3410_pilon__uns Writing cytosine report for not covered chromosome contig_3412_pilon__uns Writing cytosine report for not covered chromosome contig_3415_pilon__uns Writing cytosine report for not covered chromosome contig_3416_pilon__uns Writing cytosine report for not covered chromosome contig_3418_pilon__uns Writing cytosine report for not covered chromosome contig_3419_pilon__uns Writing cytosine report for not covered chromosome contig_3422_pilon__uns Writing cytosine report for not covered chromosome contig_3424_pilon__uns Writing cytosine report for not covered chromosome contig_3427_pilon__uns Writing cytosine report for not covered chromosome contig_3430_pilon__uns Writing cytosine report for not covered chromosome contig_3431_pilon__uns Writing cytosine report for not covered chromosome contig_3432_pilon__uns Writing cytosine report for not covered chromosome contig_3433_pilon__uns Writing cytosine report for not covered chromosome contig_3435_pilon__uns Writing cytosine report for not covered chromosome contig_3436_pilon__uns Writing cytosine report for not covered chromosome contig_3437_pilon__uns Writing cytosine report for not covered chromosome contig_3441_pilon__uns Writing cytosine report for not covered chromosome contig_3442_pilon__uns Writing cytosine report for not covered chromosome contig_3445_pilon__uns Writing cytosine report for not covered chromosome contig_3448_pilon__uns Writing cytosine report for not covered chromosome contig_3450_pilon__uns Writing cytosine report for not covered chromosome contig_3455_pilon__uns Writing cytosine report for not covered chromosome contig_3466_pilon__uns Writing cytosine report for not covered chromosome contig_3467_pilon__uns Writing cytosine report for not covered chromosome contig_3470_pilon__uns Writing cytosine report for not covered chromosome contig_3474_pilon__uns Writing cytosine report for not covered chromosome contig_3475_pilon__uns Writing cytosine report for not covered chromosome contig_3482_pilon__uns Writing cytosine report for not covered chromosome contig_3484_pilon__uns Writing cytosine report for not covered chromosome contig_3486_pilon__uns Writing cytosine report for not covered chromosome contig_3487_pilon__uns Writing cytosine report for not covered chromosome contig_3488_pilon__uns Writing cytosine report for not covered chromosome contig_3489_pilon__uns Writing cytosine report for not covered chromosome contig_3494_pilon__uns Writing cytosine report for not covered chromosome contig_3495_pilon__uns Writing cytosine report for not covered chromosome contig_3496_pilon__uns Writing cytosine report for not covered chromosome contig_3497_pilon__uns Writing cytosine report for not covered chromosome contig_3501_pilon__uns Writing cytosine report for not covered chromosome contig_3504_pilon__uns Writing cytosine report for not covered chromosome contig_3507_pilon__uns Writing cytosine report for not covered chromosome contig_3510_pilon__uns Writing cytosine report for not covered chromosome contig_3514_pilon__uns Writing cytosine report for not covered chromosome contig_3521_pilon__uns Writing cytosine report for not covered chromosome contig_3524_pilon__uns Writing cytosine report for not covered chromosome contig_3527_pilon__uns Writing cytosine report for not covered chromosome contig_3528_pilon__uns Writing cytosine report for not covered chromosome contig_3531_pilon__uns Writing cytosine report for not covered chromosome contig_3533_pilon__uns Writing cytosine report for not covered chromosome contig_3538_pilon__uns Writing cytosine report for not covered chromosome contig_353_pilon__uns Writing cytosine report for not covered chromosome contig_3540_pilon__uns Writing cytosine report for not covered chromosome contig_3541_pilon__uns Writing cytosine report for not covered chromosome contig_3544_pilon__uns Writing cytosine report for not covered chromosome contig_3546_pilon__uns Writing cytosine report for not covered chromosome contig_3547_pilon__uns Writing cytosine report for not covered chromosome contig_3549_pilon__uns Writing cytosine report for not covered chromosome contig_3552_pilon__uns Writing cytosine report for not covered chromosome contig_3553_pilon__uns Writing cytosine report for not covered chromosome contig_3558_pilon__uns Writing cytosine report for not covered chromosome contig_355_pilon__uns Writing cytosine report for not covered chromosome contig_3560_pilon__uns Writing cytosine report for not covered chromosome contig_3562_pilon__uns Writing cytosine report for not covered chromosome contig_3564_pilon__uns Writing cytosine report for not covered chromosome contig_3565_pilon__uns Writing cytosine report for not covered chromosome contig_356_pilon__uns Writing cytosine report for not covered chromosome contig_3572_pilon__uns Writing cytosine report for not covered chromosome contig_3574_pilon__uns Writing cytosine report for not covered chromosome contig_3575_pilon__uns Writing cytosine report for not covered chromosome contig_3576_pilon__uns Writing cytosine report for not covered chromosome contig_3578_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3579_pilon__uns Writing cytosine report for not covered chromosome contig_3580_pilon__uns Writing cytosine report for not covered chromosome contig_3582_pilon__uns Writing cytosine report for not covered chromosome contig_3584_pilon__uns Writing cytosine report for not covered chromosome contig_3585_pilon__uns Writing cytosine report for not covered chromosome contig_3590_pilon__uns Writing cytosine report for not covered chromosome contig_3591_pilon__uns Writing cytosine report for not covered chromosome contig_3592_pilon__uns Writing cytosine report for not covered chromosome contig_3596_pilon__uns Writing cytosine report for not covered chromosome contig_3598_pilon__uns Writing cytosine report for not covered chromosome contig_3600_pilon__uns Writing cytosine report for not covered chromosome contig_3605_pilon__uns Writing cytosine report for not covered chromosome contig_3606_pilon__uns Writing cytosine report for not covered chromosome contig_3607_pilon__uns Writing cytosine report for not covered chromosome contig_3608_pilon__uns Writing cytosine report for not covered chromosome contig_360_pilon__uns Writing cytosine report for not covered chromosome contig_3610_pilon__uns Writing cytosine report for not covered chromosome contig_3611_pilon__uns Writing cytosine report for not covered chromosome contig_3612_pilon__uns Writing cytosine report for not covered chromosome contig_361_pilon__uns Writing cytosine report for not covered chromosome contig_3620_pilon__uns Writing cytosine report for not covered chromosome contig_3625_pilon__uns Writing cytosine report for not covered chromosome contig_3628_pilon__uns Writing cytosine report for not covered chromosome contig_3629_pilon__uns Writing cytosine report for not covered chromosome contig_3630_pilon__uns Writing cytosine report for not covered chromosome contig_3631_pilon__uns Writing cytosine report for not covered chromosome contig_3632_pilon__uns Writing cytosine report for not covered chromosome contig_3636_pilon__uns Writing cytosine report for not covered chromosome contig_3637_pilon__uns Writing cytosine report for not covered chromosome contig_3638_pilon__uns Writing cytosine report for not covered chromosome contig_3639_pilon__uns Writing cytosine report for not covered chromosome contig_363_pilon__uns Writing cytosine report for not covered chromosome contig_3640_pilon__uns Writing cytosine report for not covered chromosome contig_3641_pilon__uns Writing cytosine report for not covered chromosome contig_3643_pilon__uns Writing cytosine report for not covered chromosome contig_3644_pilon__uns Writing cytosine report for not covered chromosome contig_3648_pilon__uns Writing cytosine report for not covered chromosome contig_364_pilon__uns Writing cytosine report for not covered chromosome contig_3657_pilon__uns Writing cytosine report for not covered chromosome contig_3659_pilon__uns Writing cytosine report for not covered chromosome contig_3660_pilon__uns Writing cytosine report for not covered chromosome contig_3661_pilon__uns Writing cytosine report for not covered chromosome contig_3665_pilon__uns Writing cytosine report for not covered chromosome contig_3667_pilon__uns Writing cytosine report for not covered chromosome contig_3669_pilon__uns Writing cytosine report for not covered chromosome contig_3670_pilon__uns Writing cytosine report for not covered chromosome contig_3671_pilon__uns Writing cytosine report for not covered chromosome contig_3672_pilon__uns Writing cytosine report for not covered chromosome contig_3674_pilon__uns Writing cytosine report for not covered chromosome contig_3677_pilon__uns Writing cytosine report for not covered chromosome contig_3678_pilon__uns Writing cytosine report for not covered chromosome contig_3679_pilon__uns Writing cytosine report for not covered chromosome contig_367_pilon__uns Writing cytosine report for not covered chromosome contig_3680_pilon__uns Writing cytosine report for not covered chromosome contig_3682_pilon__uns Writing cytosine report for not covered chromosome contig_3683_pilon__uns Writing cytosine report for not covered chromosome contig_3684_pilon__uns Writing cytosine report for not covered chromosome contig_3687_pilon__uns Writing cytosine report for not covered chromosome contig_3689_pilon__uns Writing cytosine report for not covered chromosome contig_3691_pilon__uns Writing cytosine report for not covered chromosome contig_3694_pilon__uns Writing cytosine report for not covered chromosome contig_3696_pilon__uns Writing cytosine report for not covered chromosome contig_3704_pilon__uns Writing cytosine report for not covered chromosome contig_3705_pilon__uns Writing cytosine report for not covered chromosome contig_3707_pilon__uns Writing cytosine report for not covered chromosome contig_370_pilon__uns Writing cytosine report for not covered chromosome contig_3711_pilon__uns Writing cytosine report for not covered chromosome contig_3714_pilon__uns Writing cytosine report for not covered chromosome contig_3715_pilon__uns Writing cytosine report for not covered chromosome contig_3716_pilon__uns Writing cytosine report for not covered chromosome contig_3719_pilon__uns Writing cytosine report for not covered chromosome contig_3720_pilon__uns Writing cytosine report for not covered chromosome contig_3723_pilon__uns Writing cytosine report for not covered chromosome contig_3724_pilon__uns Writing cytosine report for not covered chromosome contig_3725_pilon__uns Writing cytosine report for not covered chromosome contig_3726_pilon__uns Writing cytosine report for not covered chromosome contig_3727_pilon__uns Writing cytosine report for not covered chromosome contig_3728_pilon__uns Writing cytosine report for not covered chromosome contig_3731_pilon__uns Writing cytosine report for not covered chromosome contig_3733_pilon__uns Writing cytosine report for not covered chromosome contig_3734_pilon__uns Writing cytosine report for not covered chromosome contig_3735_pilon__uns Writing cytosine report for not covered chromosome contig_3736_pilon__uns Writing cytosine report for not covered chromosome contig_3737_pilon__uns Writing cytosine report for not covered chromosome contig_3739_pilon__uns Writing cytosine report for not covered chromosome contig_3740_pilon__uns Writing cytosine report for not covered chromosome contig_3741_pilon__uns Writing cytosine report for not covered chromosome contig_3742_pilon__uns Writing cytosine report for not covered chromosome contig_3743_pilon__uns Writing cytosine report for not covered chromosome contig_3746_pilon__uns Writing cytosine report for not covered chromosome contig_3749_pilon__uns Writing cytosine report for not covered chromosome contig_3750_pilon__uns Writing cytosine report for not covered chromosome contig_3753_pilon__uns Writing cytosine report for not covered chromosome contig_3754_pilon__uns Writing cytosine report for not covered chromosome contig_3755_pilon__uns Writing cytosine report for not covered chromosome contig_3756_pilon__uns Writing cytosine report for not covered chromosome contig_3758_pilon__uns Writing cytosine report for not covered chromosome contig_3761_pilon__uns Writing cytosine report for not covered chromosome contig_3763_pilon__uns Writing cytosine report for not covered chromosome contig_3764_pilon__uns Writing cytosine report for not covered chromosome contig_3765_pilon__uns Writing cytosine report for not covered chromosome contig_3766_pilon__uns Writing cytosine report for not covered chromosome contig_3770_pilon__uns Writing cytosine report for not covered chromosome contig_3772_pilon__uns Writing cytosine report for not covered chromosome contig_3773_pilon__uns Writing cytosine report for not covered chromosome contig_3774_pilon__uns Writing cytosine report for not covered chromosome contig_3775_pilon__uns Writing cytosine report for not covered chromosome contig_3776_pilon__uns Writing cytosine report for not covered chromosome contig_3777_pilon__uns Writing cytosine report for not covered chromosome contig_3778_pilon__uns Writing cytosine report for not covered chromosome contig_377_pilon__uns Writing cytosine report for not covered chromosome contig_3780_pilon__uns Writing cytosine report for not covered chromosome contig_3781_pilon__uns Writing cytosine report for not covered chromosome contig_3782_pilon__uns Writing cytosine report for not covered chromosome contig_3783_pilon__uns Writing cytosine report for not covered chromosome contig_3784_pilon__uns Writing cytosine report for not covered chromosome contig_3785_pilon__uns Writing cytosine report for not covered chromosome contig_3789_pilon__uns Writing cytosine report for not covered chromosome contig_3790_pilon__uns Writing cytosine report for not covered chromosome contig_3791_pilon__uns Writing cytosine report for not covered chromosome contig_3793_pilon__uns Writing cytosine report for not covered chromosome contig_3794_pilon__uns Writing cytosine report for not covered chromosome contig_3797_pilon__uns Writing cytosine report for not covered chromosome contig_3801_pilon__uns Writing cytosine report for not covered chromosome contig_3804_pilon__uns Writing cytosine report for not covered chromosome contig_3805_pilon__uns Writing cytosine report for not covered chromosome contig_3806_pilon__uns Writing cytosine report for not covered chromosome contig_3809_pilon__uns Writing cytosine report for not covered chromosome contig_3811_pilon__uns Writing cytosine report for not covered chromosome contig_3812_pilon__uns Writing cytosine report for not covered chromosome contig_3814_pilon__uns Writing cytosine report for not covered chromosome contig_3815_pilon__uns Writing cytosine report for not covered chromosome contig_3818_pilon__uns Writing cytosine report for not covered chromosome contig_3819_pilon__uns Writing cytosine report for not covered chromosome contig_3825_pilon__uns Writing cytosine report for not covered chromosome contig_3826_pilon__uns Writing cytosine report for not covered chromosome contig_3828_pilon__uns Writing cytosine report for not covered chromosome contig_3829_pilon__uns Writing cytosine report for not covered chromosome contig_382_pilon__uns Writing cytosine report for not covered chromosome contig_3830_pilon__uns Writing cytosine report for not covered chromosome contig_3834_pilon__uns Writing cytosine report for not covered chromosome contig_3835_pilon__uns Writing cytosine report for not covered chromosome contig_3837_pilon__uns Writing cytosine report for not covered chromosome contig_3838_pilon__uns Writing cytosine report for not covered chromosome contig_3841_pilon__uns Writing cytosine report for not covered chromosome contig_3843_pilon__uns Writing cytosine report for not covered chromosome contig_3844_pilon__uns Writing cytosine report for not covered chromosome contig_3845_pilon__uns Writing cytosine report for not covered chromosome contig_3847_pilon__uns Writing cytosine report for not covered chromosome contig_3849_pilon__uns Writing cytosine report for not covered chromosome contig_3853_pilon__uns Writing cytosine report for not covered chromosome contig_3855_pilon__uns Writing cytosine report for not covered chromosome contig_3856_pilon__uns Writing cytosine report for not covered chromosome contig_3858_pilon__uns Writing cytosine report for not covered chromosome contig_3859_pilon__uns Writing cytosine report for not covered chromosome contig_385_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_3860_pilon__uns Writing cytosine report for not covered chromosome contig_3862_pilon__uns Writing cytosine report for not covered chromosome contig_3863_pilon__uns Writing cytosine report for not covered chromosome contig_3864_pilon__uns Writing cytosine report for not covered chromosome contig_3866_pilon__uns Writing cytosine report for not covered chromosome contig_3867_pilon__uns Writing cytosine report for not covered chromosome contig_3869_pilon__uns Writing cytosine report for not covered chromosome contig_3871_pilon__uns Writing cytosine report for not covered chromosome contig_3873_pilon__uns Writing cytosine report for not covered chromosome contig_3876_pilon__uns Writing cytosine report for not covered chromosome contig_3878_pilon__uns Writing cytosine report for not covered chromosome contig_3881_pilon__uns Writing cytosine report for not covered chromosome contig_3883_pilon__uns Writing cytosine report for not covered chromosome contig_3884_pilon__uns Writing cytosine report for not covered chromosome contig_3889_pilon__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_388_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_3892_pilon__uns Writing cytosine report for not covered chromosome contig_3896_pilon__uns Writing cytosine report for not covered chromosome contig_3905_pilon__uns Writing cytosine report for not covered chromosome contig_390_pilon__uns Writing cytosine report for not covered chromosome contig_3911_pilon__uns Writing cytosine report for not covered chromosome contig_3912_pilon__uns Writing cytosine report for not covered chromosome contig_3929_pilon__uns Writing cytosine report for not covered chromosome contig_392_pilon__uns Writing cytosine report for not covered chromosome contig_3938_pilon__uns Writing cytosine report for not covered chromosome contig_3939_pilon__uns Writing cytosine report for not covered chromosome contig_3941_pilon__uns Writing cytosine report for not covered chromosome contig_3947_pilon__uns Writing cytosine report for not covered chromosome contig_3952_pilon__uns Writing cytosine report for not covered chromosome contig_3954_pilon__uns Writing cytosine report for not covered chromosome contig_3958_pilon__uns Writing cytosine report for not covered chromosome contig_3959_pilon__uns Writing cytosine report for not covered chromosome contig_3960_pilon__uns Writing cytosine report for not covered chromosome contig_3963_pilon__uns Writing cytosine report for not covered chromosome contig_3964_pilon__uns Writing cytosine report for not covered chromosome contig_3967_pilon__uns Writing cytosine report for not covered chromosome contig_396_pilon__uns Writing cytosine report for not covered chromosome contig_3981_pilon__uns Writing cytosine report for not covered chromosome contig_3982_pilon__uns Writing cytosine report for not covered chromosome contig_3985_pilon__uns Writing cytosine report for not covered chromosome contig_3987_pilon__uns Writing cytosine report for not covered chromosome contig_3989_pilon__uns Writing cytosine report for not covered chromosome contig_3997_pilon__uns Writing cytosine report for not covered chromosome contig_3998_pilon__uns Writing cytosine report for not covered chromosome contig_39_pilon__uns Writing cytosine report for not covered chromosome contig_3_pilon__uns Writing cytosine report for not covered chromosome contig_4000_pilon__uns Writing cytosine report for not covered chromosome contig_4011_pilon__uns Writing cytosine report for not covered chromosome contig_4015_pilon__uns Writing cytosine report for not covered chromosome contig_401_pilon__uns Writing cytosine report for not covered chromosome contig_4034_pilon__uns Writing cytosine report for not covered chromosome contig_4036_pilon__uns Writing cytosine report for not covered chromosome contig_4039_pilon__uns Writing cytosine report for not covered chromosome contig_4042_pilon__uns Writing cytosine report for not covered chromosome contig_4056_pilon__uns Writing cytosine report for not covered chromosome contig_4069_pilon__uns Writing cytosine report for not covered chromosome contig_4074_pilon__uns Writing cytosine report for not covered chromosome contig_407_pilon__uns Writing cytosine report for not covered chromosome contig_4081_pilon__uns Writing cytosine report for not covered chromosome contig_4082_pilon__uns Writing cytosine report for not covered chromosome contig_4083_pilon__uns Writing cytosine report for not covered chromosome contig_4089_pilon__uns Writing cytosine report for not covered chromosome contig_4091_pilon__uns Writing cytosine report for not covered chromosome contig_4092_pilon__uns Writing cytosine report for not covered chromosome contig_40_pilon__uns Writing cytosine report for not covered chromosome contig_4100_pilon__uns Writing cytosine report for not covered chromosome contig_4105_pilon__uns Writing cytosine report for not covered chromosome contig_4109_pilon__uns Writing cytosine report for not covered chromosome contig_4111_pilon__uns Writing cytosine report for not covered chromosome contig_4115_pilon__uns Writing cytosine report for not covered chromosome contig_4118_pilon__uns Writing cytosine report for not covered chromosome contig_4120_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4126_pilon__uns Writing cytosine report for not covered chromosome contig_4132_pilon__uns Writing cytosine report for not covered chromosome contig_4135_pilon__uns Writing cytosine report for not covered chromosome contig_4138_pilon__uns Writing cytosine report for not covered chromosome contig_4139_pilon__uns Writing cytosine report for not covered chromosome contig_4141_pilon__uns Writing cytosine report for not covered chromosome contig_4148_pilon__uns Writing cytosine report for not covered chromosome contig_4152_pilon__uns Writing cytosine report for not covered chromosome contig_4157_pilon__uns Writing cytosine report for not covered chromosome contig_415_pilon__uns Writing cytosine report for not covered chromosome contig_4161_pilon__uns Writing cytosine report for not covered chromosome contig_4163_pilon__uns Writing cytosine report for not covered chromosome contig_4165_pilon__uns Writing cytosine report for not covered chromosome contig_4169_pilon__uns Writing cytosine report for not covered chromosome contig_4188_pilon__uns Writing cytosine report for not covered chromosome contig_4189_pilon__uns Writing cytosine report for not covered chromosome contig_418_pilon__uns Writing cytosine report for not covered chromosome contig_4192_pilon__uns Writing cytosine report for not covered chromosome contig_4202_pilon__uns Writing cytosine report for not covered chromosome contig_4203_pilon__uns Writing cytosine report for not covered chromosome contig_420_pilon__uns Writing cytosine report for not covered chromosome contig_4212_pilon__uns Writing cytosine report for not covered chromosome contig_4213_pilon__uns Writing cytosine report for not covered chromosome contig_4217_pilon__uns Writing cytosine report for not covered chromosome contig_421_pilon__uns Writing cytosine report for not covered chromosome contig_4221_pilon__uns Writing cytosine report for not covered chromosome contig_4224_pilon__uns Writing cytosine report for not covered chromosome contig_4225_pilon__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4226_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4227_pilon__uns Writing cytosine report for not covered chromosome contig_4229_pilon__uns Writing cytosine report for not covered chromosome contig_4231_pilon__uns Writing cytosine report for not covered chromosome contig_4234_pilon__uns Writing cytosine report for not covered chromosome contig_4237_pilon__uns Writing cytosine report for not covered chromosome contig_423_pilon__uns Writing cytosine report for not covered chromosome contig_4242_pilon__uns Writing cytosine report for not covered chromosome contig_4244_pilon__uns Writing cytosine report for not covered chromosome contig_424_pilon__uns Writing cytosine report for not covered chromosome contig_4256_pilon__uns Writing cytosine report for not covered chromosome contig_4257_pilon__uns Writing cytosine report for not covered chromosome contig_4261_pilon__uns Writing cytosine report for not covered chromosome contig_4263_pilon__uns Writing cytosine report for not covered chromosome contig_4270_pilon__uns Writing cytosine report for not covered chromosome contig_4271_pilon__uns Writing cytosine report for not covered chromosome contig_4272_pilon__uns Writing cytosine report for not covered chromosome contig_4280_pilon__uns Writing cytosine report for not covered chromosome contig_4281_pilon__uns Writing cytosine report for not covered chromosome contig_4285_pilon__uns Writing cytosine report for not covered chromosome contig_4287_pilon__uns Writing cytosine report for not covered chromosome contig_4291_pilon__uns Writing cytosine report for not covered chromosome contig_4294_pilon__uns Writing cytosine report for not covered chromosome contig_4295_pilon__uns Writing cytosine report for not covered chromosome contig_4297_pilon__uns Writing cytosine report for not covered chromosome contig_429_pilon__uns Writing cytosine report for not covered chromosome contig_4301_pilon__uns Writing cytosine report for not covered chromosome contig_4307_pilon__uns Writing cytosine report for not covered chromosome contig_4314_pilon__uns Writing cytosine report for not covered chromosome contig_4319_pilon__uns Writing cytosine report for not covered chromosome contig_4324_pilon__uns Writing cytosine report for not covered chromosome contig_4326_pilon__uns Writing cytosine report for not covered chromosome contig_4328_pilon__uns Writing cytosine report for not covered chromosome contig_4336_pilon__uns Writing cytosine report for not covered chromosome contig_4340_pilon__uns Writing cytosine report for not covered chromosome contig_4342_pilon__uns Writing cytosine report for not covered chromosome contig_4345_pilon__uns Writing cytosine report for not covered chromosome contig_4347_pilon__uns Writing cytosine report for not covered chromosome contig_4350_pilon__uns Writing cytosine report for not covered chromosome contig_4353_pilon__uns Writing cytosine report for not covered chromosome contig_4356_pilon__uns Writing cytosine report for not covered chromosome contig_435_pilon__uns Writing cytosine report for not covered chromosome contig_4377_pilon__uns Writing cytosine report for not covered chromosome contig_4378_pilon__uns Writing cytosine report for not covered chromosome contig_437_pilon__uns Writing cytosine report for not covered chromosome contig_4380_pilon__uns Writing cytosine report for not covered chromosome contig_4391_pilon__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4392_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4394_pilon__uns Writing cytosine report for not covered chromosome contig_4397_pilon__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4401_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_4404_pilon__uns Writing cytosine report for not covered chromosome contig_4406_pilon__uns Writing cytosine report for not covered chromosome contig_4408_pilon__uns Writing cytosine report for not covered chromosome contig_4412_pilon__uns Writing cytosine report for not covered chromosome contig_4416_pilon__uns Writing cytosine report for not covered chromosome contig_4424_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4426_pilon__uns Writing cytosine report for not covered chromosome contig_4427_pilon__uns Writing cytosine report for not covered chromosome contig_442_pilon__uns Writing cytosine report for not covered chromosome contig_4435_pilon__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_10___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_11__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_6___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_7__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_8___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_1__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_444_pilon___frag_9___frag_3__uns Writing cytosine report for not covered chromosome contig_4451_pilon__uns Writing cytosine report for not covered chromosome contig_4456_pilon__uns Writing cytosine report for not covered chromosome contig_4464_pilon__uns Writing cytosine report for not covered chromosome contig_4466_pilon__uns Writing cytosine report for not covered chromosome contig_4468_pilon__uns Writing cytosine report for not covered chromosome contig_4469_pilon__uns Writing cytosine report for not covered chromosome contig_446_pilon__uns Writing cytosine report for not covered chromosome contig_4471_pilon__uns Writing cytosine report for not covered chromosome contig_4472_pilon__uns Writing cytosine report for not covered chromosome contig_4494_pilon__uns Writing cytosine report for not covered chromosome contig_4496_pilon__uns Writing cytosine report for not covered chromosome contig_4506_pilon__uns Writing cytosine report for not covered chromosome contig_4510_pilon__uns Writing cytosine report for not covered chromosome contig_4517_pilon__uns Writing cytosine report for not covered chromosome contig_4520_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4524_pilon__uns Writing cytosine report for not covered chromosome contig_4535_pilon__uns Writing cytosine report for not covered chromosome contig_453_pilon__uns Writing cytosine report for not covered chromosome contig_4554_pilon__uns Writing cytosine report for not covered chromosome contig_456_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4571_pilon__uns Writing cytosine report for not covered chromosome contig_4583_pilon__uns Writing cytosine report for not covered chromosome contig_4586_pilon__uns Writing cytosine report for not covered chromosome contig_4588_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4602_pilon__uns Writing cytosine report for not covered chromosome contig_4610_pilon__uns Writing cytosine report for not covered chromosome contig_4618_pilon__uns Writing cytosine report for not covered chromosome contig_4619_pilon__uns Writing cytosine report for not covered chromosome contig_4623_pilon__uns Writing cytosine report for not covered chromosome contig_4634_pilon__uns Writing cytosine report for not covered chromosome contig_4636_pilon__uns Writing cytosine report for not covered chromosome contig_4641_pilon__uns Writing cytosine report for not covered chromosome contig_4643_pilon__uns Writing cytosine report for not covered chromosome contig_4644_pilon__uns Writing cytosine report for not covered chromosome contig_4647_pilon__uns Writing cytosine report for not covered chromosome contig_464_pilon__uns Writing cytosine report for not covered chromosome contig_4663_pilon__uns Writing cytosine report for not covered chromosome contig_4664_pilon__uns Writing cytosine report for not covered chromosome contig_4667_pilon__uns Writing cytosine report for not covered chromosome contig_4672_pilon__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_4680_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_4693_pilon__uns Writing cytosine report for not covered chromosome contig_4709_pilon__uns Writing cytosine report for not covered chromosome contig_4718_pilon__uns Writing cytosine report for not covered chromosome contig_4727_pilon__uns Writing cytosine report for not covered chromosome contig_4728_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4731_pilon__uns Writing cytosine report for not covered chromosome contig_4733_pilon__uns Writing cytosine report for not covered chromosome contig_4741_pilon__uns Writing cytosine report for not covered chromosome contig_4742_pilon__uns Writing cytosine report for not covered chromosome contig_4752_pilon__uns Writing cytosine report for not covered chromosome contig_4763_pilon__uns Writing cytosine report for not covered chromosome contig_4765_pilon__uns Writing cytosine report for not covered chromosome contig_476_pilon__uns Writing cytosine report for not covered chromosome contig_4771_pilon__uns Writing cytosine report for not covered chromosome contig_4773_pilon__uns Writing cytosine report for not covered chromosome contig_4774_pilon__uns Writing cytosine report for not covered chromosome contig_4779_pilon__uns Writing cytosine report for not covered chromosome contig_477_pilon__uns Writing cytosine report for not covered chromosome contig_4802_pilon__uns Writing cytosine report for not covered chromosome contig_4805_pilon__uns Writing cytosine report for not covered chromosome contig_4809_pilon__uns Writing cytosine report for not covered chromosome contig_480_pilon__uns Writing cytosine report for not covered chromosome contig_4811_pilon__uns Writing cytosine report for not covered chromosome contig_4812_pilon__uns Writing cytosine report for not covered chromosome contig_4814_pilon__uns Writing cytosine report for not covered chromosome contig_4820_pilon__uns Writing cytosine report for not covered chromosome contig_4821_pilon__uns Writing cytosine report for not covered chromosome contig_4829_pilon__uns Writing cytosine report for not covered chromosome contig_4830_pilon__uns Writing cytosine report for not covered chromosome contig_4834_pilon__uns Writing cytosine report for not covered chromosome contig_4859_pilon__uns Writing cytosine report for not covered chromosome contig_485_pilon__uns Writing cytosine report for not covered chromosome contig_486_pilon__uns Writing cytosine report for not covered chromosome contig_4873_pilon__uns Writing cytosine report for not covered chromosome contig_4877_pilon__uns Writing cytosine report for not covered chromosome contig_4888_pilon__uns Writing cytosine report for not covered chromosome contig_4894_pilon__uns Writing cytosine report for not covered chromosome contig_489_pilon__uns Writing cytosine report for not covered chromosome contig_4904_pilon__uns Writing cytosine report for not covered chromosome contig_4905_pilon__uns Writing cytosine report for not covered chromosome contig_4909_pilon__uns Writing cytosine report for not covered chromosome contig_4915_pilon__uns Writing cytosine report for not covered chromosome contig_4919_pilon__uns Writing cytosine report for not covered chromosome contig_4927_pilon__uns Writing cytosine report for not covered chromosome contig_4929_pilon__uns Writing cytosine report for not covered chromosome contig_4936_pilon__uns Writing cytosine report for not covered chromosome contig_4938_pilon__uns Writing cytosine report for not covered chromosome contig_4941_pilon__uns Writing cytosine report for not covered chromosome contig_4942_pilon__uns Writing cytosine report for not covered chromosome contig_4944_pilon__uns Writing cytosine report for not covered chromosome contig_4947_pilon__uns Writing cytosine report for not covered chromosome contig_4953_pilon__uns Writing cytosine report for not covered chromosome contig_4965_pilon__uns Writing cytosine report for not covered chromosome contig_4968_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_4970_pilon__uns Writing cytosine report for not covered chromosome contig_4972_pilon__uns Writing cytosine report for not covered chromosome contig_497_pilon__uns Writing cytosine report for not covered chromosome contig_4996_pilon__uns Writing cytosine report for not covered chromosome contig_4999_pilon__uns Writing cytosine report for not covered chromosome contig_499_pilon__uns Writing cytosine report for not covered chromosome contig_5003_pilon__uns Writing cytosine report for not covered chromosome contig_5007_pilon__uns Writing cytosine report for not covered chromosome contig_5014_pilon__uns Writing cytosine report for not covered chromosome contig_5015_pilon__uns Writing cytosine report for not covered chromosome contig_5018_pilon__uns Writing cytosine report for not covered chromosome contig_5019_pilon__uns Writing cytosine report for not covered chromosome contig_5029_pilon__uns Writing cytosine report for not covered chromosome contig_5034_pilon__uns Writing cytosine report for not covered chromosome contig_5036_pilon__uns Writing cytosine report for not covered chromosome contig_5043_pilon__uns Writing cytosine report for not covered chromosome contig_5049_pilon__uns Writing cytosine report for not covered chromosome contig_5053_pilon__uns Writing cytosine report for not covered chromosome contig_5058_pilon__uns Writing cytosine report for not covered chromosome contig_5059_pilon__uns Writing cytosine report for not covered chromosome contig_505_pilon__uns Writing cytosine report for not covered chromosome contig_5065_pilon__uns Writing cytosine report for not covered chromosome contig_5070_pilon__uns Writing cytosine report for not covered chromosome contig_5071_pilon__uns Writing cytosine report for not covered chromosome contig_5074_pilon__uns Writing cytosine report for not covered chromosome contig_5081_pilon__uns Writing cytosine report for not covered chromosome contig_5082_pilon__uns Writing cytosine report for not covered chromosome contig_5084_pilon__uns Writing cytosine report for not covered chromosome contig_5090_pilon__uns Writing cytosine report for not covered chromosome contig_5093_pilon__uns Writing cytosine report for not covered chromosome contig_5099_pilon__uns Writing cytosine report for not covered chromosome contig_5107_pilon__uns Writing cytosine report for not covered chromosome contig_5112_pilon__uns Writing cytosine report for not covered chromosome contig_5118_pilon__uns Writing cytosine report for not covered chromosome contig_5119_pilon__uns Writing cytosine report for not covered chromosome contig_511_pilon__uns Writing cytosine report for not covered chromosome contig_5123_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5126_pilon__uns Writing cytosine report for not covered chromosome contig_5132_pilon__uns Writing cytosine report for not covered chromosome contig_5135_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5138_pilon__uns Writing cytosine report for not covered chromosome contig_5144_pilon__uns Writing cytosine report for not covered chromosome contig_5149_pilon__uns Writing cytosine report for not covered chromosome contig_514_pilon__uns Writing cytosine report for not covered chromosome contig_5162_pilon__uns Writing cytosine report for not covered chromosome contig_5175_pilon__uns Writing cytosine report for not covered chromosome contig_5176_pilon__uns Writing cytosine report for not covered chromosome contig_5193_pilon__uns Writing cytosine report for not covered chromosome contig_5195_pilon__uns Writing cytosine report for not covered chromosome contig_5198_pilon__uns Writing cytosine report for not covered chromosome contig_5211_pilon__uns Writing cytosine report for not covered chromosome contig_5213_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5223_pilon__uns Writing cytosine report for not covered chromosome contig_522_pilon__uns Writing cytosine report for not covered chromosome contig_5235_pilon__uns Writing cytosine report for not covered chromosome contig_5236_pilon__uns Writing cytosine report for not covered chromosome contig_5237_pilon__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_523_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5244_pilon__uns Writing cytosine report for not covered chromosome contig_5250_pilon__uns Writing cytosine report for not covered chromosome contig_5253_pilon__uns Writing cytosine report for not covered chromosome contig_5257_pilon__uns Writing cytosine report for not covered chromosome contig_5259_pilon__uns Writing cytosine report for not covered chromosome contig_5262_pilon__uns Writing cytosine report for not covered chromosome contig_5266_pilon__uns Writing cytosine report for not covered chromosome contig_5272_pilon__uns Writing cytosine report for not covered chromosome contig_5274_pilon__uns Writing cytosine report for not covered chromosome contig_5276_pilon__uns Writing cytosine report for not covered chromosome contig_5286_pilon__uns Writing cytosine report for not covered chromosome contig_5299_pilon__uns Writing cytosine report for not covered chromosome contig_5306_pilon__uns Writing cytosine report for not covered chromosome contig_533_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5343_pilon__uns Writing cytosine report for not covered chromosome contig_5345_pilon__uns Writing cytosine report for not covered chromosome contig_5354_pilon__uns Writing cytosine report for not covered chromosome contig_5357_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_535_pilon__uns Writing cytosine report for not covered chromosome contig_5363_pilon__uns Writing cytosine report for not covered chromosome contig_5366_pilon__uns Writing cytosine report for not covered chromosome contig_5373_pilon__uns Writing cytosine report for not covered chromosome contig_5388_pilon__uns Writing cytosine report for not covered chromosome contig_5394_pilon__uns Writing cytosine report for not covered chromosome contig_5397_pilon__uns Writing cytosine report for not covered chromosome contig_539_pilon__uns Writing cytosine report for not covered chromosome contig_5408_pilon__uns Writing cytosine report for not covered chromosome contig_5409_pilon__uns Writing cytosine report for not covered chromosome contig_540_pilon__uns Writing cytosine report for not covered chromosome contig_5411_pilon__uns Writing cytosine report for not covered chromosome contig_5412_pilon__uns Writing cytosine report for not covered chromosome contig_5414_pilon__uns Writing cytosine report for not covered chromosome contig_5427_pilon__uns Writing cytosine report for not covered chromosome contig_5431_pilon__uns Writing cytosine report for not covered chromosome contig_5434_pilon__uns Writing cytosine report for not covered chromosome contig_5436_pilon__uns Writing cytosine report for not covered chromosome contig_5437_pilon__uns Writing cytosine report for not covered chromosome contig_543_pilon__uns Writing cytosine report for not covered chromosome contig_5443_pilon__uns Writing cytosine report for not covered chromosome contig_5446_pilon__uns Writing cytosine report for not covered chromosome contig_5451_pilon__uns Writing cytosine report for not covered chromosome contig_5456_pilon__uns Writing cytosine report for not covered chromosome contig_5458_pilon__uns Writing cytosine report for not covered chromosome contig_548_pilon__uns Writing cytosine report for not covered chromosome contig_5493_pilon__uns Writing cytosine report for not covered chromosome contig_5499_pilon__uns Writing cytosine report for not covered chromosome contig_54_pilon__uns Writing cytosine report for not covered chromosome contig_5504_pilon__uns Writing cytosine report for not covered chromosome contig_5522_pilon__uns Writing cytosine report for not covered chromosome contig_5526_pilon__uns Writing cytosine report for not covered chromosome contig_5532_pilon__uns Writing cytosine report for not covered chromosome contig_5533_pilon__uns Writing cytosine report for not covered chromosome contig_5537_pilon__uns Writing cytosine report for not covered chromosome contig_5540_pilon__uns Writing cytosine report for not covered chromosome contig_5562_pilon__uns Writing cytosine report for not covered chromosome contig_5564_pilon__uns Writing cytosine report for not covered chromosome contig_5565_pilon__uns Writing cytosine report for not covered chromosome contig_5571_pilon__uns Writing cytosine report for not covered chromosome contig_5583_pilon__uns Writing cytosine report for not covered chromosome contig_5586_pilon__uns Writing cytosine report for not covered chromosome contig_5589_pilon__uns Writing cytosine report for not covered chromosome contig_5590_pilon__uns Writing cytosine report for not covered chromosome contig_5593_pilon__uns Writing cytosine report for not covered chromosome contig_5594_pilon__uns Writing cytosine report for not covered chromosome contig_5596_pilon__uns Writing cytosine report for not covered chromosome contig_5603_pilon__uns Writing cytosine report for not covered chromosome contig_5606_pilon__uns Writing cytosine report for not covered chromosome contig_5609_pilon__uns Writing cytosine report for not covered chromosome contig_5620_pilon__uns Writing cytosine report for not covered chromosome contig_5631_pilon__uns Writing cytosine report for not covered chromosome contig_5634_pilon__uns Writing cytosine report for not covered chromosome contig_5641_pilon__uns Writing cytosine report for not covered chromosome contig_5645_pilon__uns Writing cytosine report for not covered chromosome contig_5647_pilon__uns Writing cytosine report for not covered chromosome contig_5649_pilon__uns Writing cytosine report for not covered chromosome contig_564_pilon__uns Writing cytosine report for not covered chromosome contig_5652_pilon__uns Writing cytosine report for not covered chromosome contig_5653_pilon__uns Writing cytosine report for not covered chromosome contig_5656_pilon__uns Writing cytosine report for not covered chromosome contig_5658_pilon__uns Writing cytosine report for not covered chromosome contig_5669_pilon__uns Writing cytosine report for not covered chromosome contig_5676_pilon__uns Writing cytosine report for not covered chromosome contig_5678_pilon__uns Writing cytosine report for not covered chromosome contig_5679_pilon__uns Writing cytosine report for not covered chromosome contig_567_pilon__uns Writing cytosine report for not covered chromosome contig_5688_pilon__uns Writing cytosine report for not covered chromosome contig_5689_pilon__uns Writing cytosine report for not covered chromosome contig_5693_pilon__uns Writing cytosine report for not covered chromosome contig_5696_pilon__uns Writing cytosine report for not covered chromosome contig_5706_pilon__uns Writing cytosine report for not covered chromosome contig_5708_pilon__uns Writing cytosine report for not covered chromosome contig_5715_pilon__uns Writing cytosine report for not covered chromosome contig_5717_pilon__uns Writing cytosine report for not covered chromosome contig_5718_pilon__uns Writing cytosine report for not covered chromosome contig_5719_pilon__uns Writing cytosine report for not covered chromosome contig_5729_pilon__uns Writing cytosine report for not covered chromosome contig_572_pilon__uns Writing cytosine report for not covered chromosome contig_5736_pilon__uns Writing cytosine report for not covered chromosome contig_5742_pilon__uns Writing cytosine report for not covered chromosome contig_5746_pilon__uns Writing cytosine report for not covered chromosome contig_5748_pilon__uns Writing cytosine report for not covered chromosome contig_574_pilon__uns Writing cytosine report for not covered chromosome contig_5751_pilon__uns Writing cytosine report for not covered chromosome contig_5752_pilon__uns Writing cytosine report for not covered chromosome contig_5756_pilon__uns Writing cytosine report for not covered chromosome contig_5758_pilon__uns Writing cytosine report for not covered chromosome contig_5768_pilon__uns Writing cytosine report for not covered chromosome contig_5773_pilon__uns Writing cytosine report for not covered chromosome contig_5775_pilon__uns Writing cytosine report for not covered chromosome contig_5777_pilon__uns Writing cytosine report for not covered chromosome contig_5778_pilon__uns Writing cytosine report for not covered chromosome contig_5782_pilon__uns Writing cytosine report for not covered chromosome contig_5784_pilon__uns Writing cytosine report for not covered chromosome contig_5791_pilon__uns Writing cytosine report for not covered chromosome contig_5792_pilon__uns Writing cytosine report for not covered chromosome contig_5793_pilon__uns Writing cytosine report for not covered chromosome contig_5794_pilon__uns Writing cytosine report for not covered chromosome contig_5796_pilon__uns Writing cytosine report for not covered chromosome contig_5799_pilon__uns Writing cytosine report for not covered chromosome contig_579_pilon__uns Writing cytosine report for not covered chromosome contig_5800_pilon__uns Writing cytosine report for not covered chromosome contig_5801_pilon__uns Writing cytosine report for not covered chromosome contig_5802_pilon__uns Writing cytosine report for not covered chromosome contig_5803_pilon__uns Writing cytosine report for not covered chromosome contig_580_pilon__uns Writing cytosine report for not covered chromosome contig_5812_pilon__uns Writing cytosine report for not covered chromosome contig_5813_pilon__uns Writing cytosine report for not covered chromosome contig_5818_pilon__uns Writing cytosine report for not covered chromosome contig_5819_pilon__uns Writing cytosine report for not covered chromosome contig_581_pilon__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5824_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_5825_pilon__uns Writing cytosine report for not covered chromosome contig_5828_pilon__uns Writing cytosine report for not covered chromosome contig_5829_pilon__uns Writing cytosine report for not covered chromosome contig_5831_pilon__uns Writing cytosine report for not covered chromosome contig_5833_pilon__uns Writing cytosine report for not covered chromosome contig_5834_pilon__uns Writing cytosine report for not covered chromosome contig_5835_pilon__uns Writing cytosine report for not covered chromosome contig_5845_pilon__uns Writing cytosine report for not covered chromosome contig_5846_pilon__uns Writing cytosine report for not covered chromosome contig_5848_pilon__uns Writing cytosine report for not covered chromosome contig_5851_pilon__uns Writing cytosine report for not covered chromosome contig_5856_pilon__uns Writing cytosine report for not covered chromosome contig_5858_pilon__uns Writing cytosine report for not covered chromosome contig_585_pilon__uns Writing cytosine report for not covered chromosome contig_5861_pilon__uns Writing cytosine report for not covered chromosome contig_5865_pilon__uns Writing cytosine report for not covered chromosome contig_5867_pilon__uns Writing cytosine report for not covered chromosome contig_5877_pilon__uns Writing cytosine report for not covered chromosome contig_5878_pilon__uns Writing cytosine report for not covered chromosome contig_5883_pilon__uns Writing cytosine report for not covered chromosome contig_5885_pilon__uns Writing cytosine report for not covered chromosome contig_5886_pilon__uns Writing cytosine report for not covered chromosome contig_5889_pilon__uns Writing cytosine report for not covered chromosome contig_5890_pilon__uns Writing cytosine report for not covered chromosome contig_5892_pilon__uns Writing cytosine report for not covered chromosome contig_5894_pilon__uns Writing cytosine report for not covered chromosome contig_5896_pilon__uns Writing cytosine report for not covered chromosome contig_5897_pilon__uns Writing cytosine report for not covered chromosome contig_5899_pilon__uns Writing cytosine report for not covered chromosome contig_58_pilon__uns Writing cytosine report for not covered chromosome contig_5900_pilon__uns Writing cytosine report for not covered chromosome contig_5904_pilon__uns Writing cytosine report for not covered chromosome contig_5906_pilon__uns Writing cytosine report for not covered chromosome contig_590_pilon__uns Writing cytosine report for not covered chromosome contig_5911_pilon__uns Writing cytosine report for not covered chromosome contig_5914_pilon__uns Writing cytosine report for not covered chromosome contig_5918_pilon__uns Writing cytosine report for not covered chromosome contig_5919_pilon__uns Writing cytosine report for not covered chromosome contig_591_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5923_pilon__uns Writing cytosine report for not covered chromosome contig_5924_pilon__uns Writing cytosine report for not covered chromosome contig_5926_pilon__uns Writing cytosine report for not covered chromosome contig_5928_pilon__uns Writing cytosine report for not covered chromosome contig_592_pilon__uns Writing cytosine report for not covered chromosome contig_5931_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_5932_pilon__uns Writing cytosine report for not covered chromosome contig_5942_pilon__uns Writing cytosine report for not covered chromosome contig_5948_pilon__uns Writing cytosine report for not covered chromosome contig_5958_pilon__uns Writing cytosine report for not covered chromosome contig_5964_pilon__uns Writing cytosine report for not covered chromosome contig_5967_pilon__uns Writing cytosine report for not covered chromosome contig_596_pilon__uns Writing cytosine report for not covered chromosome contig_5974_pilon__uns Writing cytosine report for not covered chromosome contig_5975_pilon__uns Writing cytosine report for not covered chromosome contig_5977_pilon__uns Writing cytosine report for not covered chromosome contig_5981_pilon__uns Writing cytosine report for not covered chromosome contig_5_pilon__uns Writing cytosine report for not covered chromosome contig_6001_pilon__uns Writing cytosine report for not covered chromosome contig_6003_pilon__uns Writing cytosine report for not covered chromosome contig_6004_pilon__uns Writing cytosine report for not covered chromosome contig_600_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6024_pilon__uns Writing cytosine report for not covered chromosome contig_6029_pilon__uns Writing cytosine report for not covered chromosome contig_6030_pilon__uns Writing cytosine report for not covered chromosome contig_6031_pilon__uns Writing cytosine report for not covered chromosome contig_6034_pilon__uns Writing cytosine report for not covered chromosome contig_6036_pilon__uns Writing cytosine report for not covered chromosome contig_6038_pilon__uns Writing cytosine report for not covered chromosome contig_6042_pilon__uns Writing cytosine report for not covered chromosome contig_6047_pilon__uns Writing cytosine report for not covered chromosome contig_6048_pilon__uns Writing cytosine report for not covered chromosome contig_6049_pilon__uns Writing cytosine report for not covered chromosome contig_6051_pilon__uns Writing cytosine report for not covered chromosome contig_6053_pilon__uns Writing cytosine report for not covered chromosome contig_6054_pilon__uns Writing cytosine report for not covered chromosome contig_6055_pilon__uns Writing cytosine report for not covered chromosome contig_6059_pilon__uns Writing cytosine report for not covered chromosome contig_6062_pilon__uns Writing cytosine report for not covered chromosome contig_6063_pilon__uns Writing cytosine report for not covered chromosome contig_6064_pilon__uns Writing cytosine report for not covered chromosome contig_6068_pilon__uns Writing cytosine report for not covered chromosome contig_6069_pilon__uns Writing cytosine report for not covered chromosome contig_6071_pilon__uns Writing cytosine report for not covered chromosome contig_6074_pilon__uns Writing cytosine report for not covered chromosome contig_6075_pilon__uns Writing cytosine report for not covered chromosome contig_6076_pilon__uns Writing cytosine report for not covered chromosome contig_6078_pilon__uns Writing cytosine report for not covered chromosome contig_6079_pilon__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_607_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6085_pilon__uns Writing cytosine report for not covered chromosome contig_6087_pilon__uns Writing cytosine report for not covered chromosome contig_6088_pilon__uns Writing cytosine report for not covered chromosome contig_6092_pilon__uns Writing cytosine report for not covered chromosome contig_6095_pilon__uns Writing cytosine report for not covered chromosome contig_6096_pilon__uns Writing cytosine report for not covered chromosome contig_6099_pilon__uns Writing cytosine report for not covered chromosome contig_6101_pilon__uns Writing cytosine report for not covered chromosome contig_6108_pilon__uns Writing cytosine report for not covered chromosome contig_6109_pilon__uns Writing cytosine report for not covered chromosome contig_6110_pilon__uns Writing cytosine report for not covered chromosome contig_6115_pilon__uns Writing cytosine report for not covered chromosome contig_6117_pilon__uns Writing cytosine report for not covered chromosome contig_6119_pilon__uns Writing cytosine report for not covered chromosome contig_6121_pilon__uns Writing cytosine report for not covered chromosome contig_6128_pilon__uns Writing cytosine report for not covered chromosome contig_6131_pilon__uns Writing cytosine report for not covered chromosome contig_6135_pilon__uns Writing cytosine report for not covered chromosome contig_6136_pilon__uns Writing cytosine report for not covered chromosome contig_6137_pilon__uns Writing cytosine report for not covered chromosome contig_6139_pilon__uns Writing cytosine report for not covered chromosome contig_613_pilon__uns Writing cytosine report for not covered chromosome contig_6143_pilon__uns Writing cytosine report for not covered chromosome contig_6146_pilon__uns Writing cytosine report for not covered chromosome contig_6147_pilon__uns Writing cytosine report for not covered chromosome contig_614_pilon__uns Writing cytosine report for not covered chromosome contig_6151_pilon__uns Writing cytosine report for not covered chromosome contig_6154_pilon__uns Writing cytosine report for not covered chromosome contig_6156_pilon__uns Writing cytosine report for not covered chromosome contig_6157_pilon__uns Writing cytosine report for not covered chromosome contig_6162_pilon__uns Writing cytosine report for not covered chromosome contig_6163_pilon__uns Writing cytosine report for not covered chromosome contig_6164_pilon__uns Writing cytosine report for not covered chromosome contig_6165_pilon__uns Writing cytosine report for not covered chromosome contig_6167_pilon__uns Writing cytosine report for not covered chromosome contig_6168_pilon__uns Writing cytosine report for not covered chromosome contig_6175_pilon__uns Writing cytosine report for not covered chromosome contig_618_pilon__uns Writing cytosine report for not covered chromosome contig_6190_pilon__uns Writing cytosine report for not covered chromosome contig_6194_pilon__uns Writing cytosine report for not covered chromosome contig_6195_pilon__uns Writing cytosine report for not covered chromosome contig_6197_pilon__uns Writing cytosine report for not covered chromosome contig_61_pilon__uns Writing cytosine report for not covered chromosome contig_6202_pilon__uns Writing cytosine report for not covered chromosome contig_6206_pilon__uns Writing cytosine report for not covered chromosome contig_6210_pilon__uns Writing cytosine report for not covered chromosome contig_6212_pilon__uns Writing cytosine report for not covered chromosome contig_6219_pilon__uns Writing cytosine report for not covered chromosome contig_6224_pilon__uns Writing cytosine report for not covered chromosome contig_6232_pilon__uns Writing cytosine report for not covered chromosome contig_623_pilon__uns Writing cytosine report for not covered chromosome contig_6240_pilon__uns Writing cytosine report for not covered chromosome contig_6242_pilon__uns Writing cytosine report for not covered chromosome contig_6251_pilon__uns Writing cytosine report for not covered chromosome contig_6255_pilon__uns Writing cytosine report for not covered chromosome contig_6256_pilon__uns Writing cytosine report for not covered chromosome contig_6257_pilon__uns Writing cytosine report for not covered chromosome contig_6258_pilon__uns Writing cytosine report for not covered chromosome contig_6259_pilon__uns Writing cytosine report for not covered chromosome contig_6260_pilon__uns Writing cytosine report for not covered chromosome contig_6267_pilon__uns Writing cytosine report for not covered chromosome contig_6269_pilon__uns Writing cytosine report for not covered chromosome contig_626_pilon__uns Writing cytosine report for not covered chromosome contig_6270_pilon__uns Writing cytosine report for not covered chromosome contig_6272_pilon__uns Writing cytosine report for not covered chromosome contig_6273_pilon__uns Writing cytosine report for not covered chromosome contig_627_pilon__uns Writing cytosine report for not covered chromosome contig_6282_pilon__uns Writing cytosine report for not covered chromosome contig_6284_pilon__uns Writing cytosine report for not covered chromosome contig_6289_pilon__uns Writing cytosine report for not covered chromosome contig_6291_pilon__uns Writing cytosine report for not covered chromosome contig_6293_pilon__uns Writing cytosine report for not covered chromosome contig_6297_pilon__uns Writing cytosine report for not covered chromosome contig_6298_pilon__uns Writing cytosine report for not covered chromosome contig_6303_pilon__uns Writing cytosine report for not covered chromosome contig_6313_pilon__uns Writing cytosine report for not covered chromosome contig_6314_pilon__uns Writing cytosine report for not covered chromosome contig_6322_pilon__uns Writing cytosine report for not covered chromosome contig_6323_pilon__uns Writing cytosine report for not covered chromosome contig_6327_pilon__uns Writing cytosine report for not covered chromosome contig_6334_pilon__uns Writing cytosine report for not covered chromosome contig_6336_pilon__uns Writing cytosine report for not covered chromosome contig_6338_pilon__uns Writing cytosine report for not covered chromosome contig_6340_pilon__uns Writing cytosine report for not covered chromosome contig_6347_pilon__uns Writing cytosine report for not covered chromosome contig_6353_pilon__uns Writing cytosine report for not covered chromosome contig_6356_pilon__uns Writing cytosine report for not covered chromosome contig_6362_pilon__uns Writing cytosine report for not covered chromosome contig_6363_pilon__uns Writing cytosine report for not covered chromosome contig_6364_pilon__uns Writing cytosine report for not covered chromosome contig_6365_pilon__uns Writing cytosine report for not covered chromosome contig_6368_pilon__uns Writing cytosine report for not covered chromosome contig_6369_pilon__uns Writing cytosine report for not covered chromosome contig_6371_pilon__uns Writing cytosine report for not covered chromosome contig_6375_pilon__uns Writing cytosine report for not covered chromosome contig_6377_pilon__uns Writing cytosine report for not covered chromosome contig_6385_pilon__uns Writing cytosine report for not covered chromosome contig_6388_pilon__uns Writing cytosine report for not covered chromosome contig_6393_pilon__uns Writing cytosine report for not covered chromosome contig_6402_pilon__uns Writing cytosine report for not covered chromosome contig_6405_pilon__uns Writing cytosine report for not covered chromosome contig_6407_pilon__uns Writing cytosine report for not covered chromosome contig_6408_pilon__uns Writing cytosine report for not covered chromosome contig_6410_pilon__uns Writing cytosine report for not covered chromosome contig_6411_pilon__uns Writing cytosine report for not covered chromosome contig_6413_pilon__uns Writing cytosine report for not covered chromosome contig_6420_pilon__uns Writing cytosine report for not covered chromosome contig_6425_pilon__uns Writing cytosine report for not covered chromosome contig_6427_pilon__uns Writing cytosine report for not covered chromosome contig_642_pilon__uns Writing cytosine report for not covered chromosome contig_6430_pilon__uns Writing cytosine report for not covered chromosome contig_6432_pilon__uns Writing cytosine report for not covered chromosome contig_6434_pilon__uns Writing cytosine report for not covered chromosome contig_6436_pilon__uns Writing cytosine report for not covered chromosome contig_643_pilon__uns Writing cytosine report for not covered chromosome contig_6440_pilon__uns Writing cytosine report for not covered chromosome contig_6444_pilon__uns Writing cytosine report for not covered chromosome contig_6445_pilon__uns Writing cytosine report for not covered chromosome contig_6447_pilon__uns Writing cytosine report for not covered chromosome contig_6449_pilon__uns Writing cytosine report for not covered chromosome contig_644_pilon__uns Writing cytosine report for not covered chromosome contig_6451_pilon__uns Writing cytosine report for not covered chromosome contig_6452_pilon__uns Writing cytosine report for not covered chromosome contig_6459_pilon__uns Writing cytosine report for not covered chromosome contig_6461_pilon__uns Writing cytosine report for not covered chromosome contig_6462_pilon__uns Writing cytosine report for not covered chromosome contig_6469_pilon__uns Writing cytosine report for not covered chromosome contig_6470_pilon__uns Writing cytosine report for not covered chromosome contig_6471_pilon__uns Writing cytosine report for not covered chromosome contig_6477_pilon__uns Writing cytosine report for not covered chromosome contig_6479_pilon__uns Writing cytosine report for not covered chromosome contig_6480_pilon__uns Writing cytosine report for not covered chromosome contig_6494_pilon__uns Writing cytosine report for not covered chromosome contig_6496_pilon__uns Writing cytosine report for not covered chromosome contig_6498_pilon__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_64_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_6501_pilon__uns Writing cytosine report for not covered chromosome contig_6503_pilon__uns Writing cytosine report for not covered chromosome contig_6505_pilon__uns Writing cytosine report for not covered chromosome contig_6514_pilon__uns Writing cytosine report for not covered chromosome contig_6515_pilon__uns Writing cytosine report for not covered chromosome contig_6518_pilon__uns Writing cytosine report for not covered chromosome contig_6529_pilon__uns Writing cytosine report for not covered chromosome contig_652_pilon__uns Writing cytosine report for not covered chromosome contig_6536_pilon__uns Writing cytosine report for not covered chromosome contig_6537_pilon__uns Writing cytosine report for not covered chromosome contig_6540_pilon__uns Writing cytosine report for not covered chromosome contig_6541_pilon__uns Writing cytosine report for not covered chromosome contig_6544_pilon__uns Writing cytosine report for not covered chromosome contig_6547_pilon__uns Writing cytosine report for not covered chromosome contig_6549_pilon__uns Writing cytosine report for not covered chromosome contig_655_pilon__uns Writing cytosine report for not covered chromosome contig_6562_pilon__uns Writing cytosine report for not covered chromosome contig_6565_pilon__uns Writing cytosine report for not covered chromosome contig_6568_pilon__uns Writing cytosine report for not covered chromosome contig_656_pilon__uns Writing cytosine report for not covered chromosome contig_6576_pilon__uns Writing cytosine report for not covered chromosome contig_6577_pilon__uns Writing cytosine report for not covered chromosome contig_6579_pilon__uns Writing cytosine report for not covered chromosome contig_6581_pilon__uns Writing cytosine report for not covered chromosome contig_6588_pilon__uns Writing cytosine report for not covered chromosome contig_6590_pilon__uns Writing cytosine report for not covered chromosome contig_6592_pilon__uns Writing cytosine report for not covered chromosome contig_6597_pilon__uns Writing cytosine report for not covered chromosome contig_6606_pilon__uns Writing cytosine report for not covered chromosome contig_6609_pilon__uns Writing cytosine report for not covered chromosome contig_6615_pilon__uns Writing cytosine report for not covered chromosome contig_6617_pilon__uns Writing cytosine report for not covered chromosome contig_6619_pilon__uns Writing cytosine report for not covered chromosome contig_661_pilon__uns Writing cytosine report for not covered chromosome contig_6622_pilon__uns Writing cytosine report for not covered chromosome contig_6629_pilon__uns Writing cytosine report for not covered chromosome contig_6630_pilon__uns Writing cytosine report for not covered chromosome contig_6637_pilon__uns Writing cytosine report for not covered chromosome contig_6638_pilon__uns Writing cytosine report for not covered chromosome contig_6647_pilon__uns Writing cytosine report for not covered chromosome contig_6652_pilon__uns Writing cytosine report for not covered chromosome contig_6657_pilon__uns Writing cytosine report for not covered chromosome contig_6660_pilon__uns Writing cytosine report for not covered chromosome contig_6661_pilon__uns Writing cytosine report for not covered chromosome contig_6664_pilon__uns Writing cytosine report for not covered chromosome contig_6665_pilon__uns Writing cytosine report for not covered chromosome contig_6670_pilon__uns Writing cytosine report for not covered chromosome contig_6671_pilon__uns Writing cytosine report for not covered chromosome contig_6672_pilon__uns Writing cytosine report for not covered chromosome contig_6673_pilon__uns Writing cytosine report for not covered chromosome contig_6675_pilon__uns Writing cytosine report for not covered chromosome contig_6677_pilon__uns Writing cytosine report for not covered chromosome contig_6680_pilon__uns Writing cytosine report for not covered chromosome contig_6683_pilon__uns Writing cytosine report for not covered chromosome contig_6687_pilon__uns Writing cytosine report for not covered chromosome contig_668_pilon__uns Writing cytosine report for not covered chromosome contig_6697_pilon__uns Writing cytosine report for not covered chromosome contig_6698_pilon__uns Writing cytosine report for not covered chromosome contig_669_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6701_pilon__uns Writing cytosine report for not covered chromosome contig_6704_pilon__uns Writing cytosine report for not covered chromosome contig_6709_pilon__uns Writing cytosine report for not covered chromosome contig_670_pilon__uns Writing cytosine report for not covered chromosome contig_6715_pilon__uns Writing cytosine report for not covered chromosome contig_6719_pilon__uns Writing cytosine report for not covered chromosome contig_6721_pilon__uns Writing cytosine report for not covered chromosome contig_6725_pilon__uns Writing cytosine report for not covered chromosome contig_6733_pilon__uns Writing cytosine report for not covered chromosome contig_6735_pilon__uns Writing cytosine report for not covered chromosome contig_6739_pilon__uns Writing cytosine report for not covered chromosome contig_6750_pilon__uns Writing cytosine report for not covered chromosome contig_6753_pilon__uns Writing cytosine report for not covered chromosome contig_675_pilon__uns Writing cytosine report for not covered chromosome contig_6760_pilon__uns Writing cytosine report for not covered chromosome contig_6761_pilon__uns Writing cytosine report for not covered chromosome contig_6768_pilon__uns Writing cytosine report for not covered chromosome contig_6770_pilon__uns Writing cytosine report for not covered chromosome contig_6772_pilon__uns Writing cytosine report for not covered chromosome contig_6779_pilon__uns Writing cytosine report for not covered chromosome contig_6780_pilon__uns Writing cytosine report for not covered chromosome contig_6787_pilon__uns Writing cytosine report for not covered chromosome contig_6793_pilon__uns Writing cytosine report for not covered chromosome contig_6796_pilon__uns Writing cytosine report for not covered chromosome contig_6799_pilon__uns Writing cytosine report for not covered chromosome contig_679_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_6802_pilon__uns Writing cytosine report for not covered chromosome contig_6807_pilon__uns Writing cytosine report for not covered chromosome contig_680_pilon__uns Writing cytosine report for not covered chromosome contig_6811_pilon__uns Writing cytosine report for not covered chromosome contig_6813_pilon__uns Writing cytosine report for not covered chromosome contig_6823_pilon__uns Writing cytosine report for not covered chromosome contig_6824_pilon__uns Writing cytosine report for not covered chromosome contig_6826_pilon__uns Writing cytosine report for not covered chromosome contig_6829_pilon__uns Writing cytosine report for not covered chromosome contig_6833_pilon__uns Writing cytosine report for not covered chromosome contig_6836_pilon__uns Writing cytosine report for not covered chromosome contig_6841_pilon__uns Writing cytosine report for not covered chromosome contig_6843_pilon__uns Writing cytosine report for not covered chromosome contig_6844_pilon__uns Writing cytosine report for not covered chromosome contig_6845_pilon__uns Writing cytosine report for not covered chromosome contig_684_pilon__uns Writing cytosine report for not covered chromosome contig_6855_pilon__uns Writing cytosine report for not covered chromosome contig_6858_pilon__uns Writing cytosine report for not covered chromosome contig_6859_pilon__uns Writing cytosine report for not covered chromosome contig_6860_pilon__uns Writing cytosine report for not covered chromosome contig_6861_pilon__uns Writing cytosine report for not covered chromosome contig_6865_pilon__uns Writing cytosine report for not covered chromosome contig_6866_pilon__uns Writing cytosine report for not covered chromosome contig_6869_pilon__uns Writing cytosine report for not covered chromosome contig_686_pilon__uns Writing cytosine report for not covered chromosome contig_6870_pilon__uns Writing cytosine report for not covered chromosome contig_6872_pilon__uns Writing cytosine report for not covered chromosome contig_6875_pilon__uns Writing cytosine report for not covered chromosome contig_6885_pilon__uns Writing cytosine report for not covered chromosome contig_6886_pilon__uns Writing cytosine report for not covered chromosome contig_6891_pilon__uns Writing cytosine report for not covered chromosome contig_6892_pilon__uns Writing cytosine report for not covered chromosome contig_6897_pilon__uns Writing cytosine report for not covered chromosome contig_6898_pilon__uns Writing cytosine report for not covered chromosome contig_6899_pilon__uns Writing cytosine report for not covered chromosome contig_689_pilon__uns Writing cytosine report for not covered chromosome contig_6901_pilon__uns Writing cytosine report for not covered chromosome contig_6905_pilon__uns Writing cytosine report for not covered chromosome contig_6906_pilon__uns Writing cytosine report for not covered chromosome contig_6915_pilon__uns Writing cytosine report for not covered chromosome contig_6916_pilon__uns Writing cytosine report for not covered chromosome contig_6918_pilon__uns Writing cytosine report for not covered chromosome contig_6919_pilon__uns Writing cytosine report for not covered chromosome contig_6921_pilon__uns Writing cytosine report for not covered chromosome contig_6922_pilon__uns Writing cytosine report for not covered chromosome contig_6939_pilon__uns Writing cytosine report for not covered chromosome contig_6949_pilon__uns Writing cytosine report for not covered chromosome contig_6950_pilon__uns Writing cytosine report for not covered chromosome contig_6958_pilon__uns Writing cytosine report for not covered chromosome contig_6959_pilon__uns Writing cytosine report for not covered chromosome contig_6966_pilon__uns Writing cytosine report for not covered chromosome contig_6967_pilon__uns Writing cytosine report for not covered chromosome contig_6970_pilon__uns Writing cytosine report for not covered chromosome contig_6974_pilon__uns Writing cytosine report for not covered chromosome contig_6979_pilon__uns Writing cytosine report for not covered chromosome contig_6982_pilon__uns Writing cytosine report for not covered chromosome contig_6983_pilon__uns Writing cytosine report for not covered chromosome contig_6987_pilon__uns Writing cytosine report for not covered chromosome contig_6998_pilon__uns Writing cytosine report for not covered chromosome contig_7001_pilon__uns Writing cytosine report for not covered chromosome contig_7003_pilon__uns Writing cytosine report for not covered chromosome contig_7004_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_7006_pilon__uns Writing cytosine report for not covered chromosome contig_7008_pilon__uns Writing cytosine report for not covered chromosome contig_7011_pilon__uns Writing cytosine report for not covered chromosome contig_7013_pilon__uns Writing cytosine report for not covered chromosome contig_701_pilon__uns Writing cytosine report for not covered chromosome contig_7021_pilon__uns Writing cytosine report for not covered chromosome contig_7023_pilon__uns Writing cytosine report for not covered chromosome contig_7027_pilon__uns Writing cytosine report for not covered chromosome contig_7028_pilon__uns Writing cytosine report for not covered chromosome contig_7029_pilon__uns Writing cytosine report for not covered chromosome contig_702_pilon__uns Writing cytosine report for not covered chromosome contig_7031_pilon__uns Writing cytosine report for not covered chromosome contig_7032_pilon__uns Writing cytosine report for not covered chromosome contig_7035_pilon__uns Writing cytosine report for not covered chromosome contig_7044_pilon__uns Writing cytosine report for not covered chromosome contig_7052_pilon__uns Writing cytosine report for not covered chromosome contig_7058_pilon__uns Writing cytosine report for not covered chromosome contig_7064_pilon__uns Writing cytosine report for not covered chromosome contig_7067_pilon__uns Writing cytosine report for not covered chromosome contig_7070_pilon__uns Writing cytosine report for not covered chromosome contig_7074_pilon__uns Writing cytosine report for not covered chromosome contig_7075_pilon__uns Writing cytosine report for not covered chromosome contig_7076_pilon__uns Writing cytosine report for not covered chromosome contig_708_pilon__uns Writing cytosine report for not covered chromosome contig_7091_pilon__uns Writing cytosine report for not covered chromosome contig_7094_pilon__uns Writing cytosine report for not covered chromosome contig_709_pilon__uns Writing cytosine report for not covered chromosome contig_7105_pilon__uns Writing cytosine report for not covered chromosome contig_7107_pilon__uns Writing cytosine report for not covered chromosome contig_710_pilon__uns Writing cytosine report for not covered chromosome contig_7110_pilon__uns Writing cytosine report for not covered chromosome contig_7111_pilon__uns Writing cytosine report for not covered chromosome contig_7112_pilon__uns Writing cytosine report for not covered chromosome contig_711_pilon__uns Writing cytosine report for not covered chromosome contig_7120_pilon__uns Writing cytosine report for not covered chromosome contig_7132_pilon__uns Writing cytosine report for not covered chromosome contig_7133_pilon__uns Writing cytosine report for not covered chromosome contig_7134_pilon__uns Writing cytosine report for not covered chromosome contig_7144_pilon__uns Writing cytosine report for not covered chromosome contig_7146_pilon__uns Writing cytosine report for not covered chromosome contig_7151_pilon__uns Writing cytosine report for not covered chromosome contig_7153_pilon__uns Writing cytosine report for not covered chromosome contig_715_pilon__uns Writing cytosine report for not covered chromosome contig_7162_pilon__uns Writing cytosine report for not covered chromosome contig_7165_pilon__uns Writing cytosine report for not covered chromosome contig_7169_pilon__uns Writing cytosine report for not covered chromosome contig_716_pilon__uns Writing cytosine report for not covered chromosome contig_7173_pilon__uns Writing cytosine report for not covered chromosome contig_7174_pilon__uns Writing cytosine report for not covered chromosome contig_7179_pilon__uns Writing cytosine report for not covered chromosome contig_7180_pilon__uns Writing cytosine report for not covered chromosome contig_7181_pilon__uns Writing cytosine report for not covered chromosome contig_7184_pilon__uns Writing cytosine report for not covered chromosome contig_718_pilon__uns Writing cytosine report for not covered chromosome contig_7195_pilon__uns Writing cytosine report for not covered chromosome contig_7201_pilon__uns Writing cytosine report for not covered chromosome contig_7202_pilon__uns Writing cytosine report for not covered chromosome contig_7208_pilon__uns Writing cytosine report for not covered chromosome contig_720_pilon__uns Writing cytosine report for not covered chromosome contig_7210_pilon__uns Writing cytosine report for not covered chromosome contig_7213_pilon__uns Writing cytosine report for not covered chromosome contig_7215_pilon__uns Writing cytosine report for not covered chromosome contig_7219_pilon__uns Writing cytosine report for not covered chromosome contig_7221_pilon__uns Writing cytosine report for not covered chromosome contig_7224_pilon__uns Writing cytosine report for not covered chromosome contig_7235_pilon__uns Writing cytosine report for not covered chromosome contig_7236_pilon__uns Writing cytosine report for not covered chromosome contig_7237_pilon__uns Writing cytosine report for not covered chromosome contig_7239_pilon__uns Writing cytosine report for not covered chromosome contig_7248_pilon__uns Writing cytosine report for not covered chromosome contig_7250_pilon__uns Writing cytosine report for not covered chromosome contig_7269_pilon__uns Writing cytosine report for not covered chromosome contig_7276_pilon__uns Writing cytosine report for not covered chromosome contig_7278_pilon__uns Writing cytosine report for not covered chromosome contig_7281_pilon__uns Writing cytosine report for not covered chromosome contig_7286_pilon__uns Writing cytosine report for not covered chromosome contig_7294_pilon__uns Writing cytosine report for not covered chromosome contig_7298_pilon__uns Writing cytosine report for not covered chromosome contig_7299_pilon__uns Writing cytosine report for not covered chromosome contig_7303_pilon__uns Writing cytosine report for not covered chromosome contig_7307_pilon__uns Writing cytosine report for not covered chromosome contig_7309_pilon__uns Writing cytosine report for not covered chromosome contig_7314_pilon__uns Writing cytosine report for not covered chromosome contig_7316_pilon__uns Writing cytosine report for not covered chromosome contig_7322_pilon__uns Writing cytosine report for not covered chromosome contig_7329_pilon__uns Writing cytosine report for not covered chromosome contig_7330_pilon__uns Writing cytosine report for not covered chromosome contig_7339_pilon__uns Writing cytosine report for not covered chromosome contig_733_pilon__uns Writing cytosine report for not covered chromosome contig_7342_pilon__uns Writing cytosine report for not covered chromosome contig_7343_pilon__uns Writing cytosine report for not covered chromosome contig_7344_pilon__uns Writing cytosine report for not covered chromosome contig_7345_pilon__uns Writing cytosine report for not covered chromosome contig_7347_pilon__uns Writing cytosine report for not covered chromosome contig_7350_pilon__uns Writing cytosine report for not covered chromosome contig_7354_pilon__uns Writing cytosine report for not covered chromosome contig_7357_pilon__uns Writing cytosine report for not covered chromosome contig_7359_pilon__uns Writing cytosine report for not covered chromosome contig_735_pilon__uns Writing cytosine report for not covered chromosome contig_7361_pilon__uns Writing cytosine report for not covered chromosome contig_7365_pilon__uns Writing cytosine report for not covered chromosome contig_7366_pilon__uns Writing cytosine report for not covered chromosome contig_7371_pilon__uns Writing cytosine report for not covered chromosome contig_7373_pilon__uns Writing cytosine report for not covered chromosome contig_7374_pilon__uns Writing cytosine report for not covered chromosome contig_7381_pilon__uns Writing cytosine report for not covered chromosome contig_7384_pilon__uns Writing cytosine report for not covered chromosome contig_7393_pilon__uns Writing cytosine report for not covered chromosome contig_7401_pilon__uns Writing cytosine report for not covered chromosome contig_7408_pilon__uns Writing cytosine report for not covered chromosome contig_7410_pilon__uns Writing cytosine report for not covered chromosome contig_7412_pilon__uns Writing cytosine report for not covered chromosome contig_7417_pilon__uns Writing cytosine report for not covered chromosome contig_7418_pilon__uns Writing cytosine report for not covered chromosome contig_7426_pilon__uns Writing cytosine report for not covered chromosome contig_7428_pilon__uns Writing cytosine report for not covered chromosome contig_7429_pilon__uns Writing cytosine report for not covered chromosome contig_7430_pilon__uns Writing cytosine report for not covered chromosome contig_7433_pilon__uns Writing cytosine report for not covered chromosome contig_7434_pilon__uns Writing cytosine report for not covered chromosome contig_7437_pilon__uns Writing cytosine report for not covered chromosome contig_7439_pilon__uns Writing cytosine report for not covered chromosome contig_743_pilon__uns Writing cytosine report for not covered chromosome contig_7442_pilon__uns Writing cytosine report for not covered chromosome contig_7443_pilon__uns Writing cytosine report for not covered chromosome contig_7445_pilon__uns Writing cytosine report for not covered chromosome contig_7446_pilon__uns Writing cytosine report for not covered chromosome contig_7449_pilon__uns Writing cytosine report for not covered chromosome contig_744_pilon__uns Writing cytosine report for not covered chromosome contig_7450_pilon__uns Writing cytosine report for not covered chromosome contig_7453_pilon__uns Writing cytosine report for not covered chromosome contig_7456_pilon__uns Writing cytosine report for not covered chromosome contig_7459_pilon__uns Writing cytosine report for not covered chromosome contig_7467_pilon__uns Writing cytosine report for not covered chromosome contig_7474_pilon__uns Writing cytosine report for not covered chromosome contig_7476_pilon__uns Writing cytosine report for not covered chromosome contig_7477_pilon__uns Writing cytosine report for not covered chromosome contig_7481_pilon__uns Writing cytosine report for not covered chromosome contig_7484_pilon__uns Writing cytosine report for not covered chromosome contig_7487_pilon__uns Writing cytosine report for not covered chromosome contig_7500_pilon__uns Writing cytosine report for not covered chromosome contig_7507_pilon__uns Writing cytosine report for not covered chromosome contig_750_pilon__uns Writing cytosine report for not covered chromosome contig_7511_pilon__uns Writing cytosine report for not covered chromosome contig_7513_pilon__uns Writing cytosine report for not covered chromosome contig_7525_pilon__uns Writing cytosine report for not covered chromosome contig_7527_pilon__uns Writing cytosine report for not covered chromosome contig_7528_pilon__uns Writing cytosine report for not covered chromosome contig_7531_pilon__uns Writing cytosine report for not covered chromosome contig_7533_pilon__uns Writing cytosine report for not covered chromosome contig_7538_pilon__uns Writing cytosine report for not covered chromosome contig_753_pilon__uns Writing cytosine report for not covered chromosome contig_7540_pilon__uns Writing cytosine report for not covered chromosome contig_7545_pilon__uns Writing cytosine report for not covered chromosome contig_7562_pilon__uns Writing cytosine report for not covered chromosome contig_7563_pilon__uns Writing cytosine report for not covered chromosome contig_7569_pilon__uns Writing cytosine report for not covered chromosome contig_756_pilon__uns Writing cytosine report for not covered chromosome contig_7571_pilon__uns Writing cytosine report for not covered chromosome contig_7572_pilon__uns Writing cytosine report for not covered chromosome contig_7574_pilon__uns Writing cytosine report for not covered chromosome contig_7575_pilon__uns Writing cytosine report for not covered chromosome contig_7576_pilon__uns Writing cytosine report for not covered chromosome contig_7577_pilon__uns Writing cytosine report for not covered chromosome contig_7579_pilon__uns Writing cytosine report for not covered chromosome contig_7582_pilon__uns Writing cytosine report for not covered chromosome contig_7584_pilon__uns Writing cytosine report for not covered chromosome contig_7586_pilon__uns Writing cytosine report for not covered chromosome contig_7587_pilon__uns Writing cytosine report for not covered chromosome contig_7589_pilon__uns Writing cytosine report for not covered chromosome contig_758_pilon__uns Writing cytosine report for not covered chromosome contig_7590_pilon__uns Writing cytosine report for not covered chromosome contig_7591_pilon__uns Writing cytosine report for not covered chromosome contig_7594_pilon__uns Writing cytosine report for not covered chromosome contig_7606_pilon__uns Writing cytosine report for not covered chromosome contig_7609_pilon__uns Writing cytosine report for not covered chromosome contig_7610_pilon__uns Writing cytosine report for not covered chromosome contig_7611_pilon__uns Writing cytosine report for not covered chromosome contig_7616_pilon__uns Writing cytosine report for not covered chromosome contig_7619_pilon__uns Writing cytosine report for not covered chromosome contig_7620_pilon__uns Writing cytosine report for not covered chromosome contig_7621_pilon__uns Writing cytosine report for not covered chromosome contig_7629_pilon__uns Writing cytosine report for not covered chromosome contig_762_pilon__uns Writing cytosine report for not covered chromosome contig_7632_pilon__uns Writing cytosine report for not covered chromosome contig_7643_pilon__uns Writing cytosine report for not covered chromosome contig_7645_pilon__uns Writing cytosine report for not covered chromosome contig_7649_pilon__uns Writing cytosine report for not covered chromosome contig_7655_pilon__uns Writing cytosine report for not covered chromosome contig_765_pilon__uns Writing cytosine report for not covered chromosome contig_7662_pilon__uns Writing cytosine report for not covered chromosome contig_7665_pilon__uns Writing cytosine report for not covered chromosome contig_7668_pilon__uns Writing cytosine report for not covered chromosome contig_7670_pilon__uns Writing cytosine report for not covered chromosome contig_7672_pilon__uns Writing cytosine report for not covered chromosome contig_7677_pilon__uns Writing cytosine report for not covered chromosome contig_7683_pilon__uns Writing cytosine report for not covered chromosome contig_7686_pilon__uns Writing cytosine report for not covered chromosome contig_7687_pilon__uns Writing cytosine report for not covered chromosome contig_7691_pilon__uns Writing cytosine report for not covered chromosome contig_7696_pilon__uns Writing cytosine report for not covered chromosome contig_7699_pilon__uns Writing cytosine report for not covered chromosome contig_7701_pilon__uns Writing cytosine report for not covered chromosome contig_7712_pilon__uns Writing cytosine report for not covered chromosome contig_7713_pilon__uns Writing cytosine report for not covered chromosome contig_7714_pilon__uns Writing cytosine report for not covered chromosome contig_7732_pilon__uns Writing cytosine report for not covered chromosome contig_7735_pilon__uns Writing cytosine report for not covered chromosome contig_7737_pilon__uns Writing cytosine report for not covered chromosome contig_7741_pilon__uns Writing cytosine report for not covered chromosome contig_7742_pilon__uns Writing cytosine report for not covered chromosome contig_7743_pilon__uns Writing cytosine report for not covered chromosome contig_7754_pilon__uns Writing cytosine report for not covered chromosome contig_7756_pilon__uns Writing cytosine report for not covered chromosome contig_7762_pilon__uns Writing cytosine report for not covered chromosome contig_7765_pilon__uns Writing cytosine report for not covered chromosome contig_7767_pilon__uns Writing cytosine report for not covered chromosome contig_7771_pilon__uns Writing cytosine report for not covered chromosome contig_7773_pilon__uns Writing cytosine report for not covered chromosome contig_7774_pilon__uns Writing cytosine report for not covered chromosome contig_777_pilon__uns Writing cytosine report for not covered chromosome contig_7780_pilon__uns Writing cytosine report for not covered chromosome contig_7783_pilon__uns Writing cytosine report for not covered chromosome contig_7784_pilon__uns Writing cytosine report for not covered chromosome contig_7785_pilon__uns Writing cytosine report for not covered chromosome contig_7792_pilon__uns Writing cytosine report for not covered chromosome contig_7795_pilon__uns Writing cytosine report for not covered chromosome contig_7801_pilon__uns Writing cytosine report for not covered chromosome contig_7805_pilon__uns Writing cytosine report for not covered chromosome contig_7814_pilon__uns Writing cytosine report for not covered chromosome contig_7818_pilon__uns Writing cytosine report for not covered chromosome contig_7819_pilon__uns Writing cytosine report for not covered chromosome contig_781_pilon__uns Writing cytosine report for not covered chromosome contig_7822_pilon__uns Writing cytosine report for not covered chromosome contig_7828_pilon__uns Writing cytosine report for not covered chromosome contig_7829_pilon__uns Writing cytosine report for not covered chromosome contig_782_pilon__uns Writing cytosine report for not covered chromosome contig_7836_pilon__uns Writing cytosine report for not covered chromosome contig_7840_pilon__uns Writing cytosine report for not covered chromosome contig_7845_pilon__uns Writing cytosine report for not covered chromosome contig_7846_pilon__uns Writing cytosine report for not covered chromosome contig_7848_pilon__uns Writing cytosine report for not covered chromosome contig_7849_pilon__uns Writing cytosine report for not covered chromosome contig_7863_pilon__uns Writing cytosine report for not covered chromosome contig_7866_pilon__uns Writing cytosine report for not covered chromosome contig_7867_pilon__uns Writing cytosine report for not covered chromosome contig_786_pilon__uns Writing cytosine report for not covered chromosome contig_7871_pilon__uns Writing cytosine report for not covered chromosome contig_7872_pilon__uns Writing cytosine report for not covered chromosome contig_7873_pilon__uns Writing cytosine report for not covered chromosome contig_7875_pilon__uns Writing cytosine report for not covered chromosome contig_7879_pilon__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_787_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_7880_pilon__uns Writing cytosine report for not covered chromosome contig_7881_pilon__uns Writing cytosine report for not covered chromosome contig_7886_pilon__uns Writing cytosine report for not covered chromosome contig_7890_pilon__uns Writing cytosine report for not covered chromosome contig_7892_pilon__uns Writing cytosine report for not covered chromosome contig_7893_pilon__uns Writing cytosine report for not covered chromosome contig_7899_pilon__uns Writing cytosine report for not covered chromosome contig_7900_pilon__uns Writing cytosine report for not covered chromosome contig_7906_pilon__uns Writing cytosine report for not covered chromosome contig_7917_pilon__uns Writing cytosine report for not covered chromosome contig_791_pilon__uns Writing cytosine report for not covered chromosome contig_7928_pilon__uns Writing cytosine report for not covered chromosome contig_7931_pilon__uns Writing cytosine report for not covered chromosome contig_7932_pilon__uns Writing cytosine report for not covered chromosome contig_7935_pilon__uns Writing cytosine report for not covered chromosome contig_7938_pilon__uns Writing cytosine report for not covered chromosome contig_7939_pilon__uns Writing cytosine report for not covered chromosome contig_793_pilon__uns Writing cytosine report for not covered chromosome contig_7940_pilon__uns Writing cytosine report for not covered chromosome contig_7947_pilon__uns Writing cytosine report for not covered chromosome contig_7949_pilon__uns Writing cytosine report for not covered chromosome contig_7952_pilon__uns Writing cytosine report for not covered chromosome contig_7955_pilon__uns Writing cytosine report for not covered chromosome contig_7957_pilon__uns Writing cytosine report for not covered chromosome contig_7958_pilon__uns Writing cytosine report for not covered chromosome contig_795_pilon__uns Writing cytosine report for not covered chromosome contig_7963_pilon__uns Writing cytosine report for not covered chromosome contig_7968_pilon__uns Writing cytosine report for not covered chromosome contig_7969_pilon__uns Writing cytosine report for not covered chromosome contig_7976_pilon__uns Writing cytosine report for not covered chromosome contig_7977_pilon__uns Writing cytosine report for not covered chromosome contig_7980_pilon__uns Writing cytosine report for not covered chromosome contig_7981_pilon__uns Writing cytosine report for not covered chromosome contig_7983_pilon__uns Writing cytosine report for not covered chromosome contig_7984_pilon__uns Writing cytosine report for not covered chromosome contig_7997_pilon__uns Writing cytosine report for not covered chromosome contig_7999_pilon__uns Writing cytosine report for not covered chromosome contig_79_pilon__uns Writing cytosine report for not covered chromosome contig_8001_pilon__uns Writing cytosine report for not covered chromosome contig_8002_pilon__uns Writing cytosine report for not covered chromosome contig_8011_pilon__uns Writing cytosine report for not covered chromosome contig_8012_pilon__uns Writing cytosine report for not covered chromosome contig_8013_pilon__uns Writing cytosine report for not covered chromosome contig_8018_pilon__uns Writing cytosine report for not covered chromosome contig_8020_pilon__uns Writing cytosine report for not covered chromosome contig_8021_pilon__uns Writing cytosine report for not covered chromosome contig_8024_pilon__uns Writing cytosine report for not covered chromosome contig_8025_pilon__uns Writing cytosine report for not covered chromosome contig_8027_pilon__uns Writing cytosine report for not covered chromosome contig_8028_pilon__uns Writing cytosine report for not covered chromosome contig_8033_pilon__uns Writing cytosine report for not covered chromosome contig_8034_pilon__uns Writing cytosine report for not covered chromosome contig_8036_pilon__uns Writing cytosine report for not covered chromosome contig_8041_pilon__uns Writing cytosine report for not covered chromosome contig_8055_pilon__uns Writing cytosine report for not covered chromosome contig_8057_pilon__uns Writing cytosine report for not covered chromosome contig_8059_pilon__uns Writing cytosine report for not covered chromosome contig_8065_pilon__uns Writing cytosine report for not covered chromosome contig_8070_pilon__uns Writing cytosine report for not covered chromosome contig_8071_pilon__uns Writing cytosine report for not covered chromosome contig_8076_pilon__uns Writing cytosine report for not covered chromosome contig_8089_pilon__uns Writing cytosine report for not covered chromosome contig_8090_pilon__uns Writing cytosine report for not covered chromosome contig_8093_pilon__uns Writing cytosine report for not covered chromosome contig_8096_pilon__uns Writing cytosine report for not covered chromosome contig_80_pilon__uns Writing cytosine report for not covered chromosome contig_8100_pilon__uns Writing cytosine report for not covered chromosome contig_8101_pilon__uns Writing cytosine report for not covered chromosome contig_8103_pilon__uns Writing cytosine report for not covered chromosome contig_8105_pilon__uns Writing cytosine report for not covered chromosome contig_8121_pilon__uns Writing cytosine report for not covered chromosome contig_8129_pilon__uns Writing cytosine report for not covered chromosome contig_8131_pilon__uns Writing cytosine report for not covered chromosome contig_8140_pilon__uns Writing cytosine report for not covered chromosome contig_8141_pilon__uns Writing cytosine report for not covered chromosome contig_8145_pilon__uns Writing cytosine report for not covered chromosome contig_8146_pilon__uns Writing cytosine report for not covered chromosome contig_8148_pilon__uns Writing cytosine report for not covered chromosome contig_8150_pilon__uns Writing cytosine report for not covered chromosome contig_8153_pilon__uns Writing cytosine report for not covered chromosome contig_8154_pilon__uns Writing cytosine report for not covered chromosome contig_8157_pilon__uns Writing cytosine report for not covered chromosome contig_8158_pilon__uns Writing cytosine report for not covered chromosome contig_8162_pilon__uns Writing cytosine report for not covered chromosome contig_8165_pilon__uns Writing cytosine report for not covered chromosome contig_816_pilon__uns Writing cytosine report for not covered chromosome contig_8170_pilon__uns Writing cytosine report for not covered chromosome contig_8171_pilon__uns Writing cytosine report for not covered chromosome contig_8172_pilon__uns Writing cytosine report for not covered chromosome contig_8180_pilon__uns Writing cytosine report for not covered chromosome contig_8182_pilon__uns Writing cytosine report for not covered chromosome contig_8183_pilon__uns Writing cytosine report for not covered chromosome contig_8186_pilon__uns Writing cytosine report for not covered chromosome contig_8189_pilon__uns Writing cytosine report for not covered chromosome contig_8192_pilon__uns Writing cytosine report for not covered chromosome contig_8195_pilon__uns Writing cytosine report for not covered chromosome contig_8198_pilon__uns Writing cytosine report for not covered chromosome contig_8202_pilon__uns Writing cytosine report for not covered chromosome contig_8204_pilon__uns Writing cytosine report for not covered chromosome contig_8206_pilon__uns Writing cytosine report for not covered chromosome contig_8207_pilon__uns Writing cytosine report for not covered chromosome contig_8212_pilon__uns Writing cytosine report for not covered chromosome contig_8213_pilon__uns Writing cytosine report for not covered chromosome contig_8217_pilon__uns Writing cytosine report for not covered chromosome contig_8219_pilon__uns Writing cytosine report for not covered chromosome contig_8222_pilon__uns Writing cytosine report for not covered chromosome contig_8223_pilon__uns Writing cytosine report for not covered chromosome contig_8225_pilon__uns Writing cytosine report for not covered chromosome contig_8227_pilon__uns Writing cytosine report for not covered chromosome contig_8228_pilon__uns Writing cytosine report for not covered chromosome contig_8231_pilon__uns Writing cytosine report for not covered chromosome contig_8233_pilon__uns Writing cytosine report for not covered chromosome contig_8242_pilon__uns Writing cytosine report for not covered chromosome contig_8251_pilon__uns Writing cytosine report for not covered chromosome contig_8252_pilon__uns Writing cytosine report for not covered chromosome contig_8253_pilon__uns Writing cytosine report for not covered chromosome contig_8254_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8257_pilon__uns Writing cytosine report for not covered chromosome contig_8259_pilon__uns Writing cytosine report for not covered chromosome contig_8260_pilon__uns Writing cytosine report for not covered chromosome contig_8261_pilon__uns Writing cytosine report for not covered chromosome contig_8262_pilon__uns Writing cytosine report for not covered chromosome contig_8268_pilon__uns Writing cytosine report for not covered chromosome contig_8269_pilon__uns Writing cytosine report for not covered chromosome contig_8272_pilon__uns Writing cytosine report for not covered chromosome contig_8277_pilon__uns Writing cytosine report for not covered chromosome contig_8278_pilon__uns Writing cytosine report for not covered chromosome contig_8280_pilon__uns Writing cytosine report for not covered chromosome contig_8286_pilon__uns Writing cytosine report for not covered chromosome contig_8289_pilon__uns Writing cytosine report for not covered chromosome contig_8298_pilon__uns Writing cytosine report for not covered chromosome contig_8299_pilon__uns Writing cytosine report for not covered chromosome contig_8302_pilon__uns Writing cytosine report for not covered chromosome contig_8303_pilon__uns Writing cytosine report for not covered chromosome contig_8305_pilon__uns Writing cytosine report for not covered chromosome contig_8306_pilon__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_830_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_8310_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8316_pilon__uns Writing cytosine report for not covered chromosome contig_8317_pilon__uns Writing cytosine report for not covered chromosome contig_8321_pilon__uns Writing cytosine report for not covered chromosome contig_8323_pilon__uns Writing cytosine report for not covered chromosome contig_8324_pilon__uns Writing cytosine report for not covered chromosome contig_8327_pilon__uns Writing cytosine report for not covered chromosome contig_8328_pilon__uns Writing cytosine report for not covered chromosome contig_8347_pilon__uns Writing cytosine report for not covered chromosome contig_834_pilon__uns Writing cytosine report for not covered chromosome contig_8363_pilon__uns Writing cytosine report for not covered chromosome contig_8375_pilon__uns Writing cytosine report for not covered chromosome contig_8381_pilon__uns Writing cytosine report for not covered chromosome contig_8383_pilon__uns Writing cytosine report for not covered chromosome contig_8388_pilon__uns Writing cytosine report for not covered chromosome contig_8398_pilon__uns Writing cytosine report for not covered chromosome contig_8400_pilon__uns Writing cytosine report for not covered chromosome contig_8414_pilon__uns Writing cytosine report for not covered chromosome contig_8417_pilon__uns Writing cytosine report for not covered chromosome contig_8422_pilon__uns Writing cytosine report for not covered chromosome contig_8439_pilon__uns Writing cytosine report for not covered chromosome contig_843_pilon__uns Writing cytosine report for not covered chromosome contig_8450_pilon__uns Writing cytosine report for not covered chromosome contig_8456_pilon__uns Writing cytosine report for not covered chromosome contig_8462_pilon__uns Writing cytosine report for not covered chromosome contig_846_pilon__uns Writing cytosine report for not covered chromosome contig_8470_pilon__uns Writing cytosine report for not covered chromosome contig_8471_pilon__uns Writing cytosine report for not covered chromosome contig_847_pilon__uns Writing cytosine report for not covered chromosome contig_8489_pilon__uns Writing cytosine report for not covered chromosome contig_8491_pilon__uns Writing cytosine report for not covered chromosome contig_8492_pilon__uns Writing cytosine report for not covered chromosome contig_8503_pilon__uns Writing cytosine report for not covered chromosome contig_8509_pilon__uns Writing cytosine report for not covered chromosome contig_850_pilon__uns Writing cytosine report for not covered chromosome contig_8511_pilon__uns Writing cytosine report for not covered chromosome contig_8514_pilon__uns Writing cytosine report for not covered chromosome contig_8527_pilon__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_852_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_8530_pilon__uns Writing cytosine report for not covered chromosome contig_8536_pilon__uns Writing cytosine report for not covered chromosome contig_8543_pilon__uns Writing cytosine report for not covered chromosome contig_8544_pilon__uns Writing cytosine report for not covered chromosome contig_8546_pilon__uns Writing cytosine report for not covered chromosome contig_8548_pilon__uns Writing cytosine report for not covered chromosome contig_8550_pilon__uns Writing cytosine report for not covered chromosome contig_855_pilon__uns Writing cytosine report for not covered chromosome contig_8560_pilon__uns Writing cytosine report for not covered chromosome contig_8570_pilon__uns Writing cytosine report for not covered chromosome contig_8577_pilon__uns Writing cytosine report for not covered chromosome contig_8595_pilon__uns Writing cytosine report for not covered chromosome contig_8598_pilon__uns Writing cytosine report for not covered chromosome contig_85_pilon__uns Writing cytosine report for not covered chromosome contig_8601_pilon__uns Writing cytosine report for not covered chromosome contig_8606_pilon__uns Writing cytosine report for not covered chromosome contig_8609_pilon__uns Writing cytosine report for not covered chromosome contig_860_pilon__uns Writing cytosine report for not covered chromosome contig_8610_pilon__uns Writing cytosine report for not covered chromosome contig_8615_pilon__uns Writing cytosine report for not covered chromosome contig_8616_pilon__uns Writing cytosine report for not covered chromosome contig_8617_pilon__uns Writing cytosine report for not covered chromosome contig_8618_pilon__uns Writing cytosine report for not covered chromosome contig_861_pilon__uns Writing cytosine report for not covered chromosome contig_8620_pilon__uns Writing cytosine report for not covered chromosome contig_8621_pilon__uns Writing cytosine report for not covered chromosome contig_8624_pilon__uns Writing cytosine report for not covered chromosome contig_8626_pilon__uns Writing cytosine report for not covered chromosome contig_8628_pilon__uns Writing cytosine report for not covered chromosome contig_8629_pilon__uns Writing cytosine report for not covered chromosome contig_8633_pilon__uns Writing cytosine report for not covered chromosome contig_8634_pilon__uns Writing cytosine report for not covered chromosome contig_8642_pilon__uns Writing cytosine report for not covered chromosome contig_8647_pilon__uns Writing cytosine report for not covered chromosome contig_8656_pilon__uns Writing cytosine report for not covered chromosome contig_8658_pilon__uns Writing cytosine report for not covered chromosome contig_865_pilon__uns Writing cytosine report for not covered chromosome contig_8661_pilon__uns Writing cytosine report for not covered chromosome contig_8665_pilon__uns Writing cytosine report for not covered chromosome contig_8669_pilon__uns Writing cytosine report for not covered chromosome contig_8670_pilon__uns Writing cytosine report for not covered chromosome contig_8671_pilon__uns Writing cytosine report for not covered chromosome contig_8673_pilon__uns Writing cytosine report for not covered chromosome contig_8675_pilon__uns Writing cytosine report for not covered chromosome contig_8678_pilon__uns Writing cytosine report for not covered chromosome contig_867_pilon__uns Writing cytosine report for not covered chromosome contig_8688_pilon__uns Writing cytosine report for not covered chromosome contig_8689_pilon__uns Writing cytosine report for not covered chromosome contig_868_pilon__uns Writing cytosine report for not covered chromosome contig_8697_pilon__uns Writing cytosine report for not covered chromosome contig_86_pilon__uns Writing cytosine report for not covered chromosome contig_8703_pilon__uns Writing cytosine report for not covered chromosome contig_8712_pilon__uns Writing cytosine report for not covered chromosome contig_8718_pilon__uns Writing cytosine report for not covered chromosome contig_8733_pilon__uns Writing cytosine report for not covered chromosome contig_8737_pilon__uns Writing cytosine report for not covered chromosome contig_873_pilon__uns Writing cytosine report for not covered chromosome contig_8746_pilon__uns Writing cytosine report for not covered chromosome contig_8751_pilon__uns Writing cytosine report for not covered chromosome contig_8754_pilon__uns Writing cytosine report for not covered chromosome contig_8761_pilon__uns Writing cytosine report for not covered chromosome contig_8765_pilon__uns Writing cytosine report for not covered chromosome contig_8769_pilon__uns Writing cytosine report for not covered chromosome contig_8774_pilon__uns Writing cytosine report for not covered chromosome contig_883_pilon__uns Writing cytosine report for not covered chromosome contig_888_pilon__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_898_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_899_pilon__uns Writing cytosine report for not covered chromosome contig_902_pilon__uns Writing cytosine report for not covered chromosome contig_909_pilon__uns Writing cytosine report for not covered chromosome contig_913_pilon__uns Writing cytosine report for not covered chromosome contig_917_pilon__uns Writing cytosine report for not covered chromosome contig_91_pilon__uns Writing cytosine report for not covered chromosome contig_928_pilon__uns Writing cytosine report for not covered chromosome contig_933_pilon__uns Writing cytosine report for not covered chromosome contig_941_pilon__uns Writing cytosine report for not covered chromosome contig_949_pilon__uns Writing cytosine report for not covered chromosome contig_951_pilon__uns Writing cytosine report for not covered chromosome contig_953_pilon__uns Writing cytosine report for not covered chromosome contig_957_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_958_pilon__uns Writing cytosine report for not covered chromosome contig_959_pilon__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_1__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_3__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_4___debris__uns Writing cytosine report for not covered chromosome contig_961_pilon___frag_5__uns Writing cytosine report for not covered chromosome contig_967_pilon__uns Writing cytosine report for not covered chromosome contig_969_pilon__uns Writing cytosine report for not covered chromosome contig_970_pilon__uns Writing cytosine report for not covered chromosome contig_973_pilon__uns Writing cytosine report for not covered chromosome contig_975_pilon__uns Writing cytosine report for not covered chromosome contig_980_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome contig_988_pilon__uns Writing cytosine report for not covered chromosome contig_989_pilon__uns Writing cytosine report for not covered chromosome contig_991_pilon__uns Writing cytosine report for not covered chromosome contig_992_pilon__uns Writing cytosine report for not covered chromosome scaffold_4415_pilon__uns Writing cytosine report for not covered chromosome scaffold_546_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_1__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_2___debris__uns Writing cytosine report for not covered chromosome scaffold_5852_pilon___frag_3__uns Writing cytosine report for not covered chromosome scaffold_6472_pilon__uns Finished writing out cytosine report (processed 2752 chromosomes/scaffolds in total). coverage2cytosine processing complete. Now merging top and bottom strand CpGs into a single CG dinucleotide entity (reading from file >>CH10_11_S20_L001.CpG_report.txt<<, in output directory '') >>> Writing a new coverage file with top and bottom strand CpG methylation evidence merged to CH10_11_S20_L001.CpG_report.merged_CpG_evidence.cov <<< CpG merging complete. Good luck finding DMRs with bsseq!